Csa6G179470 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G179470
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 11689997 .. 11690319 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAAACAAGAACTCAGTGGAAGAGGAAGGTGGGTGTGGCCGTCGGAGATGGAAAAGAGGCTAGTGGCCTCACTCATGAAATTAGATTTATCAGGTTATATTAAATGCACAGTTAGCTTGTAATAAGAAAAAACTGTATTTTAGAAACCAAAAAAAAAAGAGATAAAAAGGAACGTACGCAGGACAAGGAAAACTGTGAGTAGTAAGCCCCCCCACCCCCCTAGTCTCTTGCTTTGTCTATAGCTCCCCACCCCCTTCAAAGCAGAAAGGTGACACCTTATCTAAAACCCAATACAGAAACAAAGTCAATGATCTCTGA

mRNA sequence

ATGGATGAAACAAGAACTCAGTGGAAGAGGAAGGTGGGTGTGGCCGTCGGAGATGGAAAAGAGGCTAGTGGCCTCACTCATGAAATTAGATTTATCAGCTCCCCACCCCCTTCAAAGCAGAAAGGTGACACCTTATCTAAAACCCAATACAGAAACAAAGTCAATGATCTCTGA

Coding sequence (CDS)

ATGGATGAAACAAGAACTCAGTGGAAGAGGAAGGTGGGTGTGGCCGTCGGAGATGGAAAAGAGGCTAGTGGCCTCACTCATGAAATTAGATTTATCAGCTCCCCACCCCCTTCAAAGCAGAAAGGTGACACCTTATCTAAAACCCAATACAGAAACAAAGTCAATGATCTCTGA

Protein sequence

MDETRTQWKRKVGVAVGDGKEASGLTHEIRFISSPPPSKQKGDTLSKTQYRNKVNDL*
Homology
[Close]
BLAST of Csa6G179470 vs. TrEMBL
Match: A0A0A0KBJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G179470 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-24
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 1  MDETRTQWKRKVGVAVGDGKEASGLTHEIRFISSPPPSKQKGDTLSKTQYRNKVNDL 58
          MDETRTQWKRKVGVAVGDGKEASGLTHEIRFISSPPPSKQKGDTLSKTQYRNKVNDL
Sbjct: 1  MDETRTQWKRKVGVAVGDGKEASGLTHEIRFISSPPPSKQKGDTLSKTQYRNKVNDL 57

[Close]
BLAST of Csa6G179470 vs. NCBI nr
Match: gi|700191836|gb|KGN47040.1| (hypothetical protein Csa_6G179470 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 2.1e-24
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 1  MDETRTQWKRKVGVAVGDGKEASGLTHEIRFISSPPPSKQKGDTLSKTQYRNKVNDL 58
          MDETRTQWKRKVGVAVGDGKEASGLTHEIRFISSPPPSKQKGDTLSKTQYRNKVNDL
Sbjct: 1  MDETRTQWKRKVGVAVGDGKEASGLTHEIRFISSPPPSKQKGDTLSKTQYRNKVNDL 57

The following BLAST results are available for this feature:
BLAST of Csa6G179470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBJ9_CUCSA1.5e-24100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G179470 PE=4 SV=1[more]
BLAST of Csa6G179470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191836|gb|KGN47040.1|2.1e-24100.00hypothetical protein Csa_6G179470 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU099015cucumber EST collection version 3.0transcribed_cluster
CU160526cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G179470.1Csa6G179470.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU099015CU099015transcribed_cluster
CU160526CU160526transcribed_cluster