Csa6G179450 (gene) Cucumber (Chinese Long) v2

NameCsa6G179450
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 11685763 .. 11686256 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAGCTTGTGGTGCAGTTGTAAATTTGTACGGCGGCATTTGCAAGCTGTTGTGTTTAGATCTGGTAGTAATATAATTGCATTTGTTGCTATTATTTTGCAGCTAGCACCAATTATATCTTAGAATTTTCAACTTCTTAATTCTGGACAGCTCATCTCTGTGTTGCTTCACTCTTCTTTCTTCTGCTGTCTCAACTACTTCTCTGTTTCTCTTTTAAGCCAATTGTGTATCCTCAAGTTGGTTGGTTGGTTTGTTTTGTTGTTTGACTGGTCTTTGCTACACTCTGTTGTACATTTGGGAATACTGTGGACTTGTGTAATGATCAATTTATGGGCATTAACAACAATACTTAATGGAAAAGAAAAGGAAAGGACACTGCTTCATAATTGCTTGCTCTTGCTTTCTCCTACAACGAATTTAGTTTGCTCTTGTTTGCATTGCCATGGTGGCGTTTACAGCTCAAGCTTAATCTTGAATGATGCTTTGTAA

mRNA sequence

ATGGCAGCAGCTTGTGGTGCAGTTGTAAATTTGTACGGCGGCATTTGCAAGCTGTTGTGTTTAGATCTGCTCATCTCTGTGTTGCTTCACTCTTCTTTCTTCTGCTGTCTCAACTACTTCTCTGTTTCTCTTTTAAGCCAATTGTGTATCCTCAAGTTGGTTGGTTGGTTTGTTTTGTTGTTTGACTGGTCTTTGCTACACTCTGTTGTACATTTGGGAATACTGTGGACTTGTGTAATGATCAATTTATGGGCATTAACAACAATACTTAATGGAAAAGAAAAGGAAAGGACACTGCTTCATAATTGCTTGCTCTTGCTTTCTCCTACAACGAATTTAGTTTGCTCTTGTTTGCATTGCCATGGTGGCGTTTACAGCTCAAGCTTAATCTTGAATGATGCTTTGTAA

Coding sequence (CDS)

ATGGCAGCAGCTTGTGGTGCAGTTGTAAATTTGTACGGCGGCATTTGCAAGCTGTTGTGTTTAGATCTGCTCATCTCTGTGTTGCTTCACTCTTCTTTCTTCTGCTGTCTCAACTACTTCTCTGTTTCTCTTTTAAGCCAATTGTGTATCCTCAAGTTGGTTGGTTGGTTTGTTTTGTTGTTTGACTGGTCTTTGCTACACTCTGTTGTACATTTGGGAATACTGTGGACTTGTGTAATGATCAATTTATGGGCATTAACAACAATACTTAATGGAAAAGAAAAGGAAAGGACACTGCTTCATAATTGCTTGCTCTTGCTTTCTCCTACAACGAATTTAGTTTGCTCTTGTTTGCATTGCCATGGTGGCGTTTACAGCTCAAGCTTAATCTTGAATGATGCTTTGTAA

Protein sequence

MAAACGAVVNLYGGICKLLCLDLLISVLLHSSFFCCLNYFSVSLLSQLCILKLVGWFVLLFDWSLLHSVVHLGILWTCVMINLWALTTILNGKEKERTLLHNCLLLLSPTTNLVCSCLHCHGGVYSSSLILNDAL*
BLAST of Csa6G179450 vs. TrEMBL
Match: A0A0A0KC24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G179450 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.0e-73
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1

Query: 1   MAAACGAVVNLYGGICKLLCLDLLISVLLHSSFFCCLNYFSVSLLSQLCILKLVGWFVLL 60
           MAAACGAVVNLYGGICKLLCLDLLISVLLHSSFFCCLNYFSVSLLSQLCILKLVGWFVLL
Sbjct: 1   MAAACGAVVNLYGGICKLLCLDLLISVLLHSSFFCCLNYFSVSLLSQLCILKLVGWFVLL 60

Query: 61  FDWSLLHSVVHLGILWTCVMINLWALTTILNGKEKERTLLHNCLLLLSPTTNLVCSCLHC 120
           FDWSLLHSVVHLGILWTCVMINLWALTTILNGKEKERTLLHNCLLLLSPTTNLVCSCLHC
Sbjct: 61  FDWSLLHSVVHLGILWTCVMINLWALTTILNGKEKERTLLHNCLLLLSPTTNLVCSCLHC 120

Query: 121 HGGVYSSSLILNDAL 136
           HGGVYSSSLILNDAL
Sbjct: 121 HGGVYSSSLILNDAL 135

BLAST of Csa6G179450 vs. NCBI nr
Match: gi|700191834|gb|KGN47038.1| (hypothetical protein Csa_6G179450 [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 4.4e-73
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1

Query: 1   MAAACGAVVNLYGGICKLLCLDLLISVLLHSSFFCCLNYFSVSLLSQLCILKLVGWFVLL 60
           MAAACGAVVNLYGGICKLLCLDLLISVLLHSSFFCCLNYFSVSLLSQLCILKLVGWFVLL
Sbjct: 1   MAAACGAVVNLYGGICKLLCLDLLISVLLHSSFFCCLNYFSVSLLSQLCILKLVGWFVLL 60

Query: 61  FDWSLLHSVVHLGILWTCVMINLWALTTILNGKEKERTLLHNCLLLLSPTTNLVCSCLHC 120
           FDWSLLHSVVHLGILWTCVMINLWALTTILNGKEKERTLLHNCLLLLSPTTNLVCSCLHC
Sbjct: 61  FDWSLLHSVVHLGILWTCVMINLWALTTILNGKEKERTLLHNCLLLLSPTTNLVCSCLHC 120

Query: 121 HGGVYSSSLILNDAL 136
           HGGVYSSSLILNDAL
Sbjct: 121 HGGVYSSSLILNDAL 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KC24_CUCSA3.0e-73100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G179450 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700191834|gb|KGN47038.1|4.4e-73100.00hypothetical protein Csa_6G179450 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU099015cucumber EST collection version 3.0transcribed_cluster
CU141446cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G179450.1Csa6G179450.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU099015CU099015transcribed_cluster
CU141446CU141446transcribed_cluster