Csa6G178440 (gene) Cucumber (Chinese Long) v2

NameCsa6G178440
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 11670654 .. 11670896 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTACTGTGAAACGATTCCAACGTATGGTGTTGTAGCGCTTGTTGAGAGAAAGATGTTGATGACACGCTGGTGGAGTGTAACTATCAGGTCTAAGAATGTGAATATGGCGAGACGTTGTTGGATATCTCAAGTAACTCGCGTGATCTTGGCAAAAGTGAATCCCGGGTCAGCAATGGGAAATTTTCTCAAGTCTCAATATGAGCTTGCGATTGTGATTGTTGTACTAGTTGGTAACTAG

mRNA sequence

ATGACTTACTGTGAAACGATTCCAACGTATGGTGTTGTAGCGCTTGTTGAGAGAAAGATGTTGATGACACGCTGGTGGAGTGTAACTATCAGGTCTAAGAATGTGAATATGGCGAGACGTTGTTGGATATCTCAAGTAACTCGCGTGATCTTGGCAAAAGTGAATCCCGGGTCAGCAATGGGAAATTTTCTCAAGTCTCAATATGAGCTTGCGATTGTGATTGTTGTACTAGTTGGTAACTAG

Coding sequence (CDS)

ATGACTTACTGTGAAACGATTCCAACGTATGGTGTTGTAGCGCTTGTTGAGAGAAAGATGTTGATGACACGCTGGTGGAGTGTAACTATCAGGTCTAAGAATGTGAATATGGCGAGACGTTGTTGGATATCTCAAGTAACTCGCGTGATCTTGGCAAAAGTGAATCCCGGGTCAGCAATGGGAAATTTTCTCAAGTCTCAATATGAGCTTGCGATTGTGATTGTTGTACTAGTTGGTAACTAG

Protein sequence

MTYCETIPTYGVVALVERKMLMTRWWSVTIRSKNVNMARRCWISQVTRVILAKVNPGSAMGNFLKSQYELAIVIVVLVGN*
BLAST of Csa6G178440 vs. TrEMBL
Match: A0A0A0KBJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G178440 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1

Query: 1  MTYCETIPTYGVVALVERKMLMTRWWSVTIRSKNVNMARRCWISQVTRVILAKVNPGSAM 60
          MTYCETIPTYGVVALVERKMLMTRWWSVTIRSKNVNMARRCWISQVTRVILAKVNPGSAM
Sbjct: 1  MTYCETIPTYGVVALVERKMLMTRWWSVTIRSKNVNMARRCWISQVTRVILAKVNPGSAM 60

Query: 61 GNFLKSQYELAIVIVVLVGN 81
          GNFLKSQYELAIVIVVLVGN
Sbjct: 61 GNFLKSQYELAIVIVVLVGN 80

BLAST of Csa6G178440 vs. NCBI nr
Match: gi|700191831|gb|KGN47035.1| (hypothetical protein Csa_6G178440 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1

Query: 1  MTYCETIPTYGVVALVERKMLMTRWWSVTIRSKNVNMARRCWISQVTRVILAKVNPGSAM 60
          MTYCETIPTYGVVALVERKMLMTRWWSVTIRSKNVNMARRCWISQVTRVILAKVNPGSAM
Sbjct: 1  MTYCETIPTYGVVALVERKMLMTRWWSVTIRSKNVNMARRCWISQVTRVILAKVNPGSAM 60

Query: 61 GNFLKSQYELAIVIVVLVGN 81
          GNFLKSQYELAIVIVVLVGN
Sbjct: 61 GNFLKSQYELAIVIVVLVGN 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KBJ6_CUCSA1.2e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G178440 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700191831|gb|KGN47035.1|1.8e-37100.00hypothetical protein Csa_6G178440 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU099015cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G178440.1Csa6G178440.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU099015CU099015transcribed_cluster


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G178440CSPI06G13390Wild cucumber (PI 183967)cpicuB314
The following gene(s) are paralogous to this gene:

None