Csa6G170410 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G170410
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	DNA-directed RNA polymerase subunit H; contains IPR014381 (DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus), IPR020609 (Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit)
Location	Chr6 : 11539326 .. 11541947 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTCCCAGAAGAAGAAATCACCAAACTCTTTAGAGTCCGAAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTATTTTGTTGGGGATTTCGAGCTTGATATGTCTAAAGTACAATTTAAGAATAAGTTTGGTGAGAACATGAAAAGAGAAGATCTGGTTATCAATAAATCCAAGAGAAATAATAGCTCTGATCAGGTATAGTTTCATACTACACAATGATAATCTCATTTATGTATGACTCTCTTATAACTATTTAGTTTTCAATTTTTAGTTTTTCAAGATTGTGTTTGATGCTCCCAACTCATTGACTATGATTTTCATTTTCTAATGTAAACATTGAATTCGGAGCAAGTTTCAATAGAAAAATGTTTTTAAAAATTACTATTCTTTAGTTTTCAAAACTTGGCTTAAATTTTGAAGACTCACGTAAAAAGAAGAATATAACGAAACATAGAAATCAATAGGTTTAAGTAATATTTACAAGCTTAATTTTCAAGAACCAAAAGCTTAGGGTGTGTTTGGCCCAAGGAGTTGTGAAATATAAGGTAAGAGCTGAGAAGTAGTAGTTGTGAACTTCACTCCTTGTTTGGCTCGAGGAGTTGGTGGGTCCTACTCCTAAATAACTTCAATTTTATATGGTGGACCTCAAAGTTCACAACTCTCTGAGTTTCATTACTCCTTAGTCCTCAATATTTCACTCCGTATCCCAAACACTTGTCTGGCTCACCAACTTCTAAGTTAGTGTTAAATATTTCAACCTCAATGGTTTTCACTACCAAAGTTGCACATTTATTAAGGAACTCCGTCTTGCAATTCTGTAACCCCAAACACATGGTTAATAACTATAACATATTAACTCCAAACTTCCTCACTCAACTTAGCACCCCAACACCCCTCAATTGTTATAAAACAGGGTCTCATTGACTCATGAAATTTATTGTGTATTTAAACATGTTTAAACTTTACCTTAATAAAGGGTTGCAGTAAGTTTCCTCGGAAGAAGTTTCTATTTAAGTCATTCTCAAGTACTGTTACTGTTTGACATGGAAAATAGTTAACTATCGAAAAATATTTACCACATTTATATAAAGTTTGGTTATAGGGATGCACAGGTTATTTGTTAACCCTTTTATTTGTTACCTTCTTTTGATTTATGACTCTTTTACACAGATATATGTTTTCTTTCCTGAAGAGCCGAAGGTTGGTATAAAGATAGTGGAAACTTATGTAGGTCGTATGAAATCAGAGAATGTTTTCAGAGCAATATTTGTTGTTCAACTGAATTTGACCCCCTTTGCCCGAAATAAAATCGCCGAATTATCGTCTTCCAAACTCCATTTGGAAGTTTTCCAGGTAAAAGTAAAATCTCTTATAGTTTTTGGAGCCTTTTAATGTTGAATAGATTATTTTAATGTCATCACATGCTACAAATTTAACGAGAACTAGAGAGGATTTTCTATTTTCCTATCCCAAAACCAGTTCTCTCGTACTTTTGTTGTCTCTCACAACAACAATGATGGGGGGTGGGGGGGGGGGGGGGGGGGAGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCGGTGGGGTGGGGGAGAAGAATGGTGACGTTAGTTTGTAATTATGTGATTTTCAGTTTCCATATAATAATGTCTTGCCTACCTTCTTATTTTGCTGACGTTAACGTTTACCTCTCTGTCATTTTTTTATGCAGGAAACAGAATTGTTGGTTAACATCAAAGAGCATGTTCTCATTCCCGAGCACCAGACACTCACAGATGAAGAGAAGAAAACGTTGTTGGGGAGGTATACGGTGAAAGAAACACAAGTGAGTTTCATTTTATTTGATCTTATTTTCTTGAAATACAAGAATATTGTGAGAATTGTGTTCCATAAAATATGTTGAAATAACTTTGGTAGCTTGGCCCGTGTTGAATAAGATTTTTGTAAATGATGAAGATATTAGGAAATCAGTTCAAGTCATGATGATTGCCTACCTAAAATTTAATTTTCTACACGTTACTCTGACAATCAAATATAGTAACGTTGGATGGTTGTTTTGTTAGAATAGTTAAGATGCGTTCAAGTTGGCTCTAACAGTGTTGGATACATATTGAAAATTGGTATACGTTAGTTTTTAACAAACATTTTGCATTTTGTCTCAGCTACCTCGCATGCAAGTTACCGATCCAATTTCTAGATATTATGGGCTGAAGCGTGGACATGTAGTGAAGATCATCCGACCAAGCGAAACTGCTGGAAGATATGTGACTTATAGATATGTTGTTTGA

mRNA sequence

ATGGTGTTCCCAGAAGAAGAAATCACCAAACTCTTTAGAGTCCGAAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTATTTTGTTGGGGATTTCGAGCTTGATATGTCTAAAGTACAATTTAAGAATAAGTTTGGTGAGAACATGAAAAGAGAAGATCTGGTTATCAATAAATCCAAGAGAAATAATAGCTCTGATCAGATATATGTTTTCTTTCCTGAAGAGCCGAAGGTTGGTATAAAGATAGTGGAAACTTATGTAGGTCGTATGAAATCAGAGAATGTTTTCAGAGCAATATTTGTTGTTCAACTGAATTTGACCCCCTTTGCCCGAAATAAAATCGCCGAATTATCGTCTTCCAAACTCCATTTGGAAGTTTTCCAGGAAACAGAATTGTTGGTTAACATCAAAGAGCATGTTCTCATTCCCGAGCACCAGACACTCACAGATGAAGAGAAGAAAACGTTGTTGGGGAGGTATACGGTGAAAGAAACACAACTACCTCGCATGCAAGTTACCGATCCAATTTCTAGATATTATGGGCTGAAGCGTGGACATGTAGTGAAGATCATCCGACCAAGCGAAACTGCTGGAAGATATGTGACTTATAGATATGTTGTTTGA

Coding sequence (CDS)

ATGGTGTTCCCAGAAGAAGAAATCACCAAACTCTTTAGAGTCCGAAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTATTTTGTTGGGGATTTCGAGCTTGATATGTCTAAAGTACAATTTAAGAATAAGTTTGGTGAGAACATGAAAAGAGAAGATCTGGTTATCAATAAATCCAAGAGAAATAATAGCTCTGATCAGATATATGTTTTCTTTCCTGAAGAGCCGAAGGTTGGTATAAAGATAGTGGAAACTTATGTAGGTCGTATGAAATCAGAGAATGTTTTCAGAGCAATATTTGTTGTTCAACTGAATTTGACCCCCTTTGCCCGAAATAAAATCGCCGAATTATCGTCTTCCAAACTCCATTTGGAAGTTTTCCAGGAAACAGAATTGTTGGTTAACATCAAAGAGCATGTTCTCATTCCCGAGCACCAGACACTCACAGATGAAGAGAAGAAAACGTTGTTGGGGAGGTATACGGTGAAAGAAACACAACTACCTCGCATGCAAGTTACCGATCCAATTTCTAGATATTATGGGCTGAAGCGTGGACATGTAGTGAAGATCATCCGACCAAGCGAAACTGCTGGAAGATATGTGACTTATAGATATGTTGTTTGA

Protein sequence

MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSSKLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYYGLKRGHVVKIIRPSETAGRYVTYRYVV*

Homology

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BLAST of Csa6G170410 vs. Swiss-Prot
Match: RPB5A_ARATH (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 4.6e-82
Identity = 150/203 (73.89%), Postives = 175/203 (86.21%), Query Frame = 1


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSKRNNS 64
           EEE+ +L+R++KT++QML+DRGYF+ D EL M+K QF  K G+NMKREDLV  K+KRN++
Sbjct: 4   EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 63

Query: 65  SDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSSKLHL 124
           SDQ+Y+FFP+E KVG+K ++ Y  RMKSENVFRAI VVQ NLTPFAR  I+E+SS K HL
Sbjct: 64  SDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISS-KFHL 123

Query: 125 EVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYYGLKR 184
           EVFQE E+LVNIKEHVL+PEHQ LT EEKKTLL RYTVKETQLPR+QVTDPI+RY+GLKR
Sbjct: 124 EVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKR 183

Query: 185 GHVVKIIRPSETAGRYVTYRYVV 208
           G VVKIIRPSETAGRYVTYRYVV
Sbjct: 184 GQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of Csa6G170410 vs. Swiss-Prot
Match: RPAB1_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus GN=Polr2e PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 6.9e-54
Identity = 104/207 (50.24%), Postives = 145/207 (70.05%), Query Frame = 1


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENM-----KREDLVINKS 64
           EEE  +L+++RKT++Q+  DRGY V   ELD +  +FK +FG+       +R DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSS 124
             ++ +DQ++VFFPEEPKVGIK ++ Y  RM+ EN+ RA+ VVQ  +TP A+  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 SKLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRY 184
            K  LE F + ELL+NI EH L+PEH  +T EE   LL RY ++E+QLPR+Q  DP++RY
Sbjct: 124 -KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARY 183

Query: 185 YGLKRGHVVKIIRPSETAGRYVTYRYV 207
           +G+KRG VVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Csa6G170410 vs. Swiss-Prot
Match: RPAB1_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus GN=Polr2e PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 6.9e-54
Identity = 104/207 (50.24%), Postives = 145/207 (70.05%), Query Frame = 1


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENM-----KREDLVINKS 64
           EEE  +L+++RKT++Q+  DRGY V   ELD +  +FK +FG+       +R DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSS 124
             ++ +DQ++VFFPEEPKVGIK ++ Y  RM+ EN+ RA+ VVQ  +TP A+  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 SKLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRY 184
            K  LE F + ELL+NI EH L+PEH  +T EE   LL RY ++E+QLPR+Q  DP++RY
Sbjct: 124 -KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARY 183

Query: 185 YGLKRGHVVKIIRPSETAGRYVTYRYV 207
           +G+KRG VVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Csa6G170410 vs. Swiss-Prot
Match: RPAB1_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii GN=POLR2E PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.0e-53
Identity = 103/207 (49.76%), Postives = 144/207 (69.57%), Query Frame = 1


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENM-----KREDLVINKS 64
           EEE  +L+++RKT++Q+  DRGY V   ELD +  +F+ +FG+       +R DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSS 124
             ++ +DQ++VFFPEEPKVGIK ++ Y  RM+ EN+ RA+ VVQ  +TP A+  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 SKLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRY 184
            K  LE F + ELL+NI EH L+PEH  +T EE   LL RY ++E QLPR+Q  DP++RY
Sbjct: 124 -KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARY 183

Query: 185 YGLKRGHVVKIIRPSETAGRYVTYRYV 207
           +G+KRG VVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Csa6G170410 vs. Swiss-Prot
Match: RPAB1_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens GN=POLR2E PE=1 SV=4)

HSP 1 Score: 208.4 bits (529), Expect = 7.7e-53
Identity = 103/207 (49.76%), Postives = 143/207 (69.08%), Query Frame = 1


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENM-----KREDLVINKS 64
           EEE  +L+++RKT++Q+  DRGY V   ELD +  +FK + G+       +R DL +  +
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSS 124
             ++ +DQ++VFFPEEPKVGIK ++ Y  RM+ EN+ RA+ VVQ  +TP A+  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 SKLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRY 184
            K  LE F + ELL+NI EH L+PEH  +T EE   LL RY ++E QLPR+Q  DP++RY
Sbjct: 124 -KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARY 183

Query: 185 YGLKRGHVVKIIRPSETAGRYVTYRYV 207
           +G+KRG VVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Csa6G170410 vs. TrEMBL
Match: A0A0A0KF69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G170410 PE=3 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 2.5e-111
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60
           MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120
           RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120

Query: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180
           KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY
Sbjct: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           GLKRGHVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Csa6G170410 vs. TrEMBL
Match: A0A0A0K8L9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374590 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 6.0e-89
Identity = 165/207 (79.71%), Postives = 185/207 (89.37%), Query Frame = 1


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60
           MV  EEEIT+LFR+RKTV QML+DRGYFVGDFE+DM++ QFK K+GENMKRED+VINKSK
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120
           RN+SSDQIYVFFPEE KVGIK ++TY  RMKSENVFRAI VVQ NLTPFAR  ++E +S 
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180
             HLEVFQE ELLVNIK+HVL+PEHQ L +EEKKTLL RYTVKETQLPR+QVTDP++RYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           GLKRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Csa6G170410 vs. TrEMBL
Match: A0A0D2PK01_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G007200 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 6.7e-88
Identity = 165/207 (79.71%), Postives = 186/207 (89.86%), Query Frame = 1


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60
           MV  ++EI +LFR+RKTVLQ+LKDR YFVGDFE++MS+ QF +KFGENMKREDLVINK+K
Sbjct: 1   MVLSDDEIRRLFRIRKTVLQLLKDRDYFVGDFEINMSREQFISKFGENMKREDLVINKAK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120
           RN+SSDQIYVFFPEEPKVG+K ++TY  RMKSENVFRAI VVQ NLTPFAR  I E+ SS
Sbjct: 61  RNDSSDQIYVFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEI-SS 120

Query: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180
           K HLEVFQETELLVN+KEH L+PEHQ LT EEKKTLL RYTVKETQLPR+QV+DPI+RYY
Sbjct: 121 KFHLEVFQETELLVNVKEHSLVPEHQVLTTEEKKTLLQRYTVKETQLPRIQVSDPIARYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           GLKRG VVKIIRPSETAGRY+TYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYITYRYVV 206

[Close]

BLAST of Csa6G170410 vs. TrEMBL
Match: A0A0B0PQS6_GOSAR (Dna-directed rna polymerases i, ii, and iii subunit rpabc1 OS=Gossypium arboreum GN=F383_00256 PE=3 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 8.7e-88
Identity = 164/207 (79.23%), Postives = 186/207 (89.86%), Query Frame = 1


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60
           MV  ++EI +LFR+RKTVLQ+LKDR YFVGDFE++MS+ QF +KFGENMKREDL+INK+K
Sbjct: 1   MVLSDDEIRRLFRIRKTVLQLLKDRDYFVGDFEINMSREQFISKFGENMKREDLIINKAK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120
           RN+SSDQIYVFFPEEPKVG+K ++TY  RMKSENVFRAI VVQ NLTPFAR  I E+ SS
Sbjct: 61  RNDSSDQIYVFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEI-SS 120

Query: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180
           K HLEVFQETELLVN+KEH L+PEHQ LT EEKKTLL RYTVKETQLPR+QV+DPI+RYY
Sbjct: 121 KFHLEVFQETELLVNVKEHSLVPEHQVLTTEEKKTLLQRYTVKETQLPRIQVSDPIARYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           GLKRG VVKIIRPSETAGRY+TYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYITYRYVV 206

[Close]

BLAST of Csa6G170410 vs. TrEMBL
Match: W9RWL5_9ROSA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Morus notabilis GN=L484_003651 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 3.3e-87
Identity = 160/206 (77.67%), Postives = 186/206 (90.29%), Query Frame = 1


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60
           MV  E+EIT+LFR+R+TV+QML+DR Y VGDFEL+M+K QF+NK+GENMKREDL+INKS+
Sbjct: 1   MVLSEDEITRLFRIRRTVMQMLRDRNYLVGDFELNMTKEQFRNKYGENMKREDLIINKSR 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120
           RN+S DQIYVFFPEE KVG+K ++TY+ RMKSENV RA+ VVQ NLTPFAR  I+E+ S+
Sbjct: 61  RNDSPDQIYVFFPEEQKVGVKTMKTYINRMKSENVLRAVLVVQQNLTPFARTCISEI-ST 120

Query: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180
           K HLEVFQE ELLVNIKEHVL+PEHQ LT+EEKKTLL RYTVKETQLPR+QVTDPI+RYY
Sbjct: 121 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQVTDPIARYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYV 207
           GLKRG VVKIIRPSETAGRY+TYRYV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYITYRYV 205

[Close]

BLAST of Csa6G170410 vs. TAIR10
Match: AT3G22320.1 (AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein)

HSP 1 Score: 305.4 bits (781), Expect = 2.6e-83
Identity = 150/203 (73.89%), Postives = 175/203 (86.21%), Query Frame = 1


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSKRNNS 64
           EEE+ +L+R++KT++QML+DRGYF+ D EL M+K QF  K G+NMKREDLV  K+KRN++
Sbjct: 4   EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDN 63

Query: 65  SDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSSKLHL 124
           SDQ+Y+FFP+E KVG+K ++ Y  RMKSENVFRAI VVQ NLTPFAR  I+E+SS K HL
Sbjct: 64  SDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISS-KFHL 123

Query: 125 EVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYYGLKR 184
           EVFQE E+LVNIKEHVL+PEHQ LT EEKKTLL RYTVKETQLPR+QVTDPI+RY+GLKR
Sbjct: 124 EVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKR 183

Query: 185 GHVVKIIRPSETAGRYVTYRYVV 208
           G VVKIIRPSETAGRYVTYRYVV
Sbjct: 184 GQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of Csa6G170410 vs. TAIR10
Match: AT5G57980.1 (AT5G57980.1 RNA polymerase II fifth largest subunit, C)

HSP 1 Score: 186.8 bits (473), Expect = 1.3e-47
Identity = 96/207 (46.38%), Postives = 143/207 (69.08%), Query Frame = 1


Query: 5   EEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKR---EDLVINKSKR 64
           ++EIT++F+VR+TVLQML+DRGY + + +L++ + +F  +F + M +   E L ++ +K 
Sbjct: 5   DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64

Query: 65  NNSSDQIYVFFPEEPKVGIKIVETYVG-RMKSENVFRAIFVVQLNLTPFARNKIAELSSS 124
            N +D+IYVF+PE PKVG+ +++  V  +M+ + V R I VV + +T  AR  ++EL+  
Sbjct: 65  PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKM 124

Query: 125 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 184
            L +EVF+E EL+ NI EH L+ ++  L D+ KK LL  YTV++TQLPR+ VTDP++RYY
Sbjct: 125 -LTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYY 184

Query: 185 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           GLKRG VVKI R   T+  Y TYR+ V
Sbjct: 185 GLKRGQVVKIRRSDATSLDYYTYRFAV 210

[Close]

BLAST of Csa6G170410 vs. TAIR10
Match: AT2G41340.1 (AT2G41340.1 RNA polymerase II fifth largest subunit, D)

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-31
Identity = 80/201 (39.80%), Postives = 122/201 (60.70%), Query Frame = 1


Query: 7   EITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSKRNNSSD 66
           E  K +  R+T ++ML+DRGY V D ++++S  QF+  +GE+   + L I+   R +SS 
Sbjct: 20  ECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFDSSK 79

Query: 67  QIYVFFPEEPKVGIKIVETYVGRMKS-ENVFRAIFVVQLNLTPFARNKIAELSSSKLHLE 126
           +I V F     V +  +      + S EN+   I V+Q ++T  A  K  EL S K+  E
Sbjct: 80  KISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQAL-KAVELFSFKV--E 139

Query: 127 VFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYYGLKRG 186
           +F+ T+LLVN+ +HVL P+HQ L D+EK++LL +++++E QLPR+   DPI RYYGL+ G
Sbjct: 140 LFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETG 199

Query: 187 HVVKIIRPSETAGRYVTYRYV 207
            V+K+    E +  +VTYR V
Sbjct: 200 QVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of Csa6G170410 vs. TAIR10
Match: AT3G57080.1 (AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein)

HSP 1 Score: 128.6 bits (322), Expect = 4.3e-30
Identity = 74/201 (36.82%), Postives = 113/201 (56.22%), Query Frame = 1


Query: 6   EEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSKRNNSS 65
           EE  + +  R+  LQML+DRGY V D ++++S   F+  +GE    + L I+   R++S+
Sbjct: 23  EESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSDST 82

Query: 66  DQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSSKLHLE 125
            ++ + F     V +  + + V  + S+     + +V  N       K  EL S K+  E
Sbjct: 83  KKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFKV--E 142

Query: 126 VFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYYGLKRG 185
           +FQ T+LLVNI +H L P+HQ L DEEK TLL +++++E QLPR+   D I RYYGL++G
Sbjct: 143 IFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKG 202

Query: 186 HVVKIIRPSETAGRYVTYRYV 207
            VVK+    E    +V +R V
Sbjct: 203 QVVKVNYRGELTESHVAFRCV 221

[Close]

BLAST of Csa6G170410 vs. TAIR10
Match: AT3G54490.1 (AT3G54490.1 RNA polymerase II fifth largest subunit, E)

HSP 1 Score: 110.9 bits (276), Expect = 9.4e-25
Identity = 67/202 (33.17%), Postives = 108/202 (53.47%), Query Frame = 1


Query: 7   EITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSKRNNSSD 66
           E  + +  R T  +ML+DRGY V + EL ++  +F++ FGE  + E L I    R++   
Sbjct: 35  ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94

Query: 67  QIYVFFPEEPKVGIKIVET-YVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSSKLHLE 126
           +I V F     + +K V   ++    +  +   I V+Q  +  FA+     L++    +E
Sbjct: 95  KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKA---LTTFPFTVE 154

Query: 127 VFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYYGLKRG 186
            F   +LLVNI +H+  P+ + L  EEK+ LL ++ +++ QLP +Q  D   RYYGLK+ 
Sbjct: 155 TFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKK 214

Query: 187 HVVKIIRPSETAGRYVTYRYVV 208
            VVKI    E  G +VTYR ++
Sbjct: 215 QVVKITYSKEPVGDFVTYRCII 233

[Close]

BLAST of Csa6G170410 vs. NCBI nr
Match: gi|449450868|ref|XP_004143184.1| (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Cucumis sativus])

HSP 1 Score: 409.5 bits (1051), Expect = 3.6e-111
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60
           MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120
           RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120

Query: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180
           KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY
Sbjct: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           GLKRGHVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Csa6G170410 vs. NCBI nr
Match: gi|659112918|ref|XP_008456369.1| (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo])

HSP 1 Score: 397.1 bits (1019), Expect = 1.9e-107
Identity = 199/207 (96.14%), Postives = 204/207 (98.55%), Query Frame = 1


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60
           MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSK QFKNKFGENMKREDLVINKSK
Sbjct: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120
           RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSS+
Sbjct: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSST 120

Query: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180
           K+HLEVFQE EL+VNIKEHVLIPEHQ+LTDEEKKTLLGRYTVKETQLPRMQVTDPI+RYY
Sbjct: 121 KVHLEVFQEAELMVNIKEHVLIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           GLKRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Csa6G170410 vs. NCBI nr
Match: gi|659112921|ref|XP_008456371.1| (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 [Cucumis melo])

HSP 1 Score: 359.4 bits (921), Expect = 4.3e-96
Identity = 179/187 (95.72%), Postives = 184/187 (98.40%), Query Frame = 1


Query: 21  MLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEPKVGI 80
           MLKDRGYFVGDFELDMSK QFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEPKVGI
Sbjct: 1   MLKDRGYFVGDFELDMSKAQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEPKVGI 60

Query: 81  KIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSSKLHLEVFQETELLVNIKEHV 140
           KIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSS+K+HLEVFQE EL+VNIKEHV
Sbjct: 61  KIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSTKVHLEVFQEAELMVNIKEHV 120

Query: 141 LIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYYGLKRGHVVKIIRPSETAGRY 200
           LIPEHQ+LTDEEKKTLLGRYTVKETQLPRMQVTDPI+RYYGLKRG VVKIIRPSETAGRY
Sbjct: 121 LIPEHQSLTDEEKKTLLGRYTVKETQLPRMQVTDPIARYYGLKRGQVVKIIRPSETAGRY 180

Query: 201 VTYRYVV 208
           VTYRYVV
Sbjct: 181 VTYRYVV 187

[Close]

BLAST of Csa6G170410 vs. NCBI nr
Match: gi|659100689|ref|XP_008451219.1| (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo])

HSP 1 Score: 337.0 bits (863), Expect = 2.3e-89
Identity = 166/207 (80.19%), Postives = 186/207 (89.86%), Query Frame = 1


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60
           MV  EEEIT+LFR+RKTV QML+DRGYFVGDFE+DM++ QFK K+GENMKRED+VINKSK
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120
           RN+SSDQIYVFFPEE KVGIK ++TY  RMKSENVFRAI VVQ NLTPFAR  ++E +S 
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180
             HLEVFQE ELLVNIK+HVL+PEHQ LT+EEKKTLL RYTVKETQLPR+QVTDP++RYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           GLKRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

[Close]

BLAST of Csa6G170410 vs. NCBI nr
Match: gi|449462431|ref|XP_004148944.1| (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 8.7e-89
Identity = 165/207 (79.71%), Postives = 185/207 (89.37%), Query Frame = 1


Query: 1   MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60
           MV  EEEIT+LFR+RKTV QML+DRGYFVGDFE+DM++ QFK K+GENMKRED+VINKSK
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 61  RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120
           RN+SSDQIYVFFPEE KVGIK ++TY  RMKSENVFRAI VVQ NLTPFAR  ++E +S 
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYY 180
             HLEVFQE ELLVNIK+HVL+PEHQ L +EEKKTLL RYTVKETQLPR+QVTDP++RYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 181 GLKRGHVVKIIRPSETAGRYVTYRYVV 208
           GLKRG VVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207

The following BLAST results are available for this feature:

BLAST of Csa6G170410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPB5A_ARATH	4.6e-82	73.89	DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana GN=NRP...	[more]
RPAB1_RAT	6.9e-54	50.24	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus ...	[more]
RPAB1_MOUSE	6.9e-54	50.24	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus GN=Po...	[more]
RPAB1_PONAB	2.0e-53	49.76	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii GN=PO...	[more]
RPAB1_HUMAN	7.7e-53	49.76	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens GN=PO...	[more]

BLAST of Csa6G170410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF69_CUCSA	2.5e-111	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G170410 PE=3 SV=1	[more]
A0A0A0K8L9_CUCSA	6.0e-89	79.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374590 PE=3 SV=1	[more]
A0A0D2PK01_GOSRA	6.7e-88	79.71	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G007200 PE=3 SV=1	[more]
A0A0B0PQS6_GOSAR	8.7e-88	79.23	Dna-directed rna polymerases i, ii, and iii subunit rpabc1 OS=Gossypium arboreum...	[more]
W9RWL5_9ROSA	3.3e-87	77.67	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Morus notabilis GN...	[more]

BLAST of Csa6G170410 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22320.1	2.6e-83	73.89	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT5G57980.1	1.3e-47	46.38	RNA polymerase II fifth largest subunit, C	[more]
AT2G41340.1	1.0e-31	39.80	RNA polymerase II fifth largest subunit, D	[more]
AT3G57080.1	4.3e-30	36.82	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT3G54490.1	9.4e-25	33.17	RNA polymerase II fifth largest subunit, E	[more]

BLAST of Csa6G170410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449450868\|ref\|XP_004143184.1\|	3.6e-111	100.00	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Cucumis sativ...	[more]
gi\|659112918\|ref\|XP_008456369.1\|	1.9e-107	96.14	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cu...	[more]
gi\|659112921\|ref\|XP_008456371.1\|	4.3e-96	95.72	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 [Cu...	[more]
gi\|659100689\|ref\|XP_008451219.1\|	2.3e-89	80.19	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo]	[more]
gi\|449462431\|ref\|XP_004148944.1\|	8.7e-89	79.71	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Cucumis sativ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000783	RNA_pol_subH/Rpb5_C
IPR005571	RNA_pol_Rpb5_N
IPR014381	DNA_RNA_pol_RPB5_euk/virus
IPR020609	RpoH/RPB5

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051604	protein maturation
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0000418	DNA-directed RNA polymerase IV complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G170410.1	Csa6G170410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PRODOM	PD005155		coord: 141..206 score: 2.0
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	GENE3D	G3DSA:3.90.940.20		coord: 135..207 score: 6.7
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 134..206 score: 2.6
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	unknown	SSF55287	RPB5-like RNA polymerase subunit	coord: 132..207 score: 7.59
IPR005571	RNA polymerase, Rpb5, N-terminal	GENE3D	G3DSA:3.40.1340.10		coord: 5..134 score: 7.1
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 5..90 score: 9.7
IPR005571	RNA polymerase, Rpb5, N-terminal	unknown	SSF53036	Eukaryotic RPB5 N-terminal domain	coord: 5..135 score: 1.57
IPR014381	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus	PIR	PIRSF000747	RPB5	coord: 2..207 score: 2.1
IPR020609	Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit	HAMAP	MF_00025	RNApol_RpoH_RPB5	coord: 134..207 score: 21
None	No IPR available	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 4..207 score: 9.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G170410	MELO3C019700	Melon (DHL92) v3.5.1	cumeB426
Csa6G170410	MELO3C019700.2	Melon (DHL92) v3.6.1	cumedB406
Csa6G170410	CSPI06G13290	Wild cucumber (PI 183967)	cpicuB314
Csa6G170410	Cucsa.139650	Cucumber (Gy14) v1	cgycuB202
Csa6G170410	CsGy6G013280	Cucumber (Gy14) v2	cgybcuB282

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G170410	Cucurbita moschata (Rifu)	cmocuB126
Csa6G170410	Cucurbita moschata (Rifu)	cmocuB512
Csa6G170410	Cucurbita moschata (Rifu)	cmocuB545
Csa6G170410	Cucurbita moschata (Rifu)	cmocuB623
Csa6G170410	Melon (DHL92) v3.5.1	cumeB493
Csa6G170410	Watermelon (Charleston Gray)	cuwcgB439
Csa6G170410	Watermelon (97103) v1	cuwmB514
Csa6G170410	Cucurbita pepo (Zucchini)	cpecuB293
Csa6G170410	Cucurbita pepo (Zucchini)	cpecuB685
Csa6G170410	Cucurbita pepo (Zucchini)	cpecuB744
Csa6G170410	Bottle gourd (USVL1VR-Ls)	culsiB429
Csa6G170410	Bottle gourd (USVL1VR-Ls)	culsiB416
Csa6G170410	Cucumber (Gy14) v2	cgybcuB285
Csa6G170410	Melon (DHL92) v3.6.1	cumedB473
Csa6G170410	Silver-seed gourd	carcuB0026
Csa6G170410	Silver-seed gourd	carcuB0373
Csa6G170410	Silver-seed gourd	carcuB0422
Csa6G170410	Silver-seed gourd	carcuB0562
Csa6G170410	Watermelon (97103) v2	cuwmbB429
Csa6G170410	Wax gourd	cuwgoB569
Csa6G170410	Wax gourd	cuwgoB607
Csa6G170410	Cucumber (Chinese Long) v2	cucuB169
Csa6G170410	Cucumber (Gy14) v1	cgycuB283
Csa6G170410	Cucurbita maxima (Rimu)	cmacuB142
Csa6G170410	Cucurbita maxima (Rimu)	cmacuB556
Csa6G170410	Cucurbita maxima (Rimu)	cmacuB632