Csa6G169890 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G169890
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 11528919 .. 11529632 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCCTCCCTAACAAGCCACACTTCAACTCTTGAACATACAGATTACATACAAAAATTAGGGCTACACTATCTACAGTTCAATCTGTTCATCTCCCAGATCTATACCTCCAGCCCTTGCTCCAGTAGCATCGCATTTAGGTACTTGATCTGTTCATTCTATTCGTTTCTTTAACCTCATTTCTTGAATTTCACTTTGATTCCTCAGAAAAAAAAAGCGAAGAAATATCCTCTGTTATTTGATAAATAGTCTGCTTTGATACTAACTTTATGGTGATCGAAAGTTTTTGGTTAACAATTCCTTGTCTGTTATGTTCAATCGGATACTGTTGGATAATTGAATATTAAATTAAACCAATTATTCGACATGTTTGAAGTAGCTTCGTGTCGCAGGCATGTCGGCGACAGAAACAGAACACAACACGTTGTGAAATAGAATGCAAGAGCAGCTTTTATCCGTCTAAGCAATTCAGTTACTTTAATTGTATTGTATTCAACTTTGTATCCTGGATTGAATTGTTCTCTTTATACATAGTTTTTCTTTAGATAACGTCAATGCTATCGAGTACAATGGGGGTAGCCGTAGAAGTAGAATCGTGTTACCATTATTGAAGTGAATTCATGTTTGTGATGATGCTAGGTACCTGTTGTTTCTGTAGCTGAGGAATACCATGTCGAACAAGTTAGGGCCAACGAAAGAAAGGAACTGTAG

mRNA sequence

ATGAATTCCTCCCTAACAAGCCACACTTCAACTCTTGAACATACAGATTACATACAAAAATTAGGGCTACACTATCTACAGTTCAATCTGTTCATCTCCCAGATCTATACCTCCAGCCCTTGCTCCAGTAGCATCGCATTTAGTAGCTTCGTGTCGCAGGCATGTCGGCGACAGAAACAGAACACAACACGTTGTGAAATAGAATGCAAGAGCAGCTTTTATCCGTCTAAGCAATTCAGTTACTTTAATTGTATTGTACCTGTTGTTTCTGTAGCTGAGGAATACCATGTCGAACAAGTTAGGGCCAACGAAAGAAAGGAACTGTAG

Coding sequence (CDS)

ATGAATTCCTCCCTAACAAGCCACACTTCAACTCTTGAACATACAGATTACATACAAAAATTAGGGCTACACTATCTACAGTTCAATCTGTTCATCTCCCAGATCTATACCTCCAGCCCTTGCTCCAGTAGCATCGCATTTAGTAGCTTCGTGTCGCAGGCATGTCGGCGACAGAAACAGAACACAACACGTTGTGAAATAGAATGCAAGAGCAGCTTTTATCCGTCTAAGCAATTCAGTTACTTTAATTGTATTGTACCTGTTGTTTCTGTAGCTGAGGAATACCATGTCGAACAAGTTAGGGCCAACGAAAGAAAGGAACTGTAG

Protein sequence

MNSSLTSHTSTLEHTDYIQKLGLHYLQFNLFISQIYTSSPCSSSIAFSSFVSQACRRQKQNTTRCEIECKSSFYPSKQFSYFNCIVPVVSVAEEYHVEQVRANERKEL*
Homology
[Close]
BLAST of Csa6G169890 vs. TrEMBL
Match: A0A0A0KDZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G169890 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 6.7e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MNSSLTSHTSTLEHTDYIQKLGLHYLQFNLFISQIYTSSPCSSSIAFSSFVSQACRRQKQ 60
           MNSSLTSHTSTLEHTDYIQKLGLHYLQFNLFISQIYTSSPCSSSIAFSSFVSQACRRQKQ
Sbjct: 1   MNSSLTSHTSTLEHTDYIQKLGLHYLQFNLFISQIYTSSPCSSSIAFSSFVSQACRRQKQ 60

Query: 61  NTTRCEIECKSSFYPSKQFSYFNCIVPVVSVAEEYHVEQVRANERKEL 109
           NTTRCEIECKSSFYPSKQFSYFNCIVPVVSVAEEYHVEQVRANERKEL
Sbjct: 61  NTTRCEIECKSSFYPSKQFSYFNCIVPVVSVAEEYHVEQVRANERKEL 108

[Close]
BLAST of Csa6G169890 vs. NCBI nr
Match: gi|700191820|gb|KGN47024.1| (hypothetical protein Csa_6G169890 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 9.6e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MNSSLTSHTSTLEHTDYIQKLGLHYLQFNLFISQIYTSSPCSSSIAFSSFVSQACRRQKQ 60
           MNSSLTSHTSTLEHTDYIQKLGLHYLQFNLFISQIYTSSPCSSSIAFSSFVSQACRRQKQ
Sbjct: 1   MNSSLTSHTSTLEHTDYIQKLGLHYLQFNLFISQIYTSSPCSSSIAFSSFVSQACRRQKQ 60

Query: 61  NTTRCEIECKSSFYPSKQFSYFNCIVPVVSVAEEYHVEQVRANERKEL 109
           NTTRCEIECKSSFYPSKQFSYFNCIVPVVSVAEEYHVEQVRANERKEL
Sbjct: 61  NTTRCEIECKSSFYPSKQFSYFNCIVPVVSVAEEYHVEQVRANERKEL 108

The following BLAST results are available for this feature:
BLAST of Csa6G169890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDZ3_CUCSA6.7e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G169890 PE=4 SV=1[more]
BLAST of Csa6G169890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191820|gb|KGN47024.1|9.6e-55100.00hypothetical protein Csa_6G169890 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU116805cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G169890.1Csa6G169890.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU116805CU116805transcribed_cluster