Csa6G169330 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G169330
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	At2g42780/F7D19.22
Location	Chr6 : 11467409 .. 11468811 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACATTTTAGGAAAACAAAGTCGTCAAATACAGATTTGCAGCAAGGTTCCCCCATCAAGCAATAAGAGAAGCTTTGGAGGTAAACTTTATCTAGTGGATTCTAACTCTGGCAAGGCTTCAGCTTGACACCCTGCAAAGAAAAAGAAACATTTACATGTTATTTTTTTTCTTGATTTTCTGTAGGAAGCGGATATGGATACAATGTGGCAAACACTAAGAACAAGATACTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGGTAAAACTATTGAATTGGTACCGAGTGTAAATAAAATATGGTCATGGTCGTACAATTTATAGCATGTTGCTTGCTTAGAGTAACTGCCTAAAATTGAATATGCCCTAAAATTTGATCCATCTTGGCTTAGGATCTGATAAATCGGCATATCAAATAGATTTGGGGTTTTTCCTCTATTTTAAATTCTCCATACCAAAATTATTTTTGAGCGGTATCTTACTGCAAGCTTTATACTGGAGAACGGTTGTTATAAGAATGTCTATGTGGATCCTTGATCAGCTGAATCTAATCTCACTAAATTTCTAGAATCAATAGCTCTCATTTATAAACTGTGCCTACCCCTCCACCCTCGAAGCAAAACCCTATTCCACAATGTTCAATGAAAAGTTATCCAATCATAATACGTTTCTATCTTTGGACAGTCAAGAGATGAAAAATATAAAAGCATGGCGAAGAAATGCAGTGCAGAAGAGTTCTGAGTAAGTTGCAATTGTTTGCAGGATCATTCTCAATGCTTTCGAAACCTCCTGTTCCCACACTTGACAATGACGTTCACTCTGCTTCTTTAATTTTGCAGTATATCTTCCACAAAGAAGCCGATGTTTTCTGGAAGGGAATCCGCTTCAACTTCTAAAAATACTTCCACTCATATGGCCAAAAGATGGTAGCACTTCCATTTACCTTTTTCTTTTACCAAATGCAAAGTTCTGTTCTCTCACCCAACTCCAATGTTGTAATATCTTCAATTTAGTTATCTCATGGTTCGAAAATTGCTCCTTTACCCTCTGACACTTCTGAAATGCCATGCCCTGTGTATAATTTTATAATTCGTAGTTGCTTTCTCTTATAATGCAATGTTGTTTATTTTACACAAATTTTATCCTTCAAGTATGCAGTTTAATGTGTGATAATATCACAATCTAAATTAGCAAGTTATCAGATTTACTTTGGTCTATATTATTTTAGTGATGGAATGATCCGACTTTGCTCTTTGTTGGTTGTGGTCGTCTTTTGCATTTCGTTGATAGCATTGTAATAGGCTAATAGCCTTTGTTTTTCTGTAACTGAAGATTGATTGTATTGTGGTGGTTGTATCTTTTATATATTTCATTTTCCCCCTCGTGAGAGTTTGCATCTTCCA

mRNA sequence

ATGAACATTTTAGGAAAACAAAGTCGTCAAATACAGATTTGCAGCAAGGTTCCCCCATCAAGCAATAAGAGAAGCTTTGGAGGAAGCGGATATGGATACAATGTGGCAAACACTAAGAACAAGATACTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGTCAAGAGATGAAAAATATAAAAGCATGGCGAAGAAATGCAGTGCAGAAGAGTTCTGATATATCTTCCACAAAGAAGCCGATGTTTTCTGGAAGGGAATCCGCTTCAACTTCTAAAAATACTTCCACTCATATGGCCAAAAGATGGTAG

Coding sequence (CDS)

ATGAACATTTTAGGAAAACAAAGTCGTCAAATACAGATTTGCAGCAAGGTTCCCCCATCAAGCAATAAGAGAAGCTTTGGAGGAAGCGGATATGGATACAATGTGGCAAACACTAAGAACAAGATACTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGTCAAGAGATGAAAAATATAAAAGCATGGCGAAGAAATGCAGTGCAGAAGAGTTCTGATATATCTTCCACAAAGAAGCCGATGTTTTCTGGAAGGGAATCCGCTTCAACTTCTAAAAATACTTCCACTCATATGGCCAAAAGATGGTAG

Protein sequence

MNILGKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW*

Homology

[Close]

BLAST of Csa6G169330 vs. TrEMBL
Match: A0A0A0KF63_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G169330 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.8e-49
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 1   MNILGKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIK 60
           MNILGKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIK
Sbjct: 1   MNILGKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIK 60

Query: 61  AWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW 102
           AWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW
Sbjct: 61  AWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW 101

[Close]

BLAST of Csa6G169330 vs. TrEMBL
Match: A9P8K1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05560g PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-18
Identity = 50/88 (56.82%), Postives = 72/88 (81.82%), Query Frame = 1


Query: 6   KQSRQIQICSKVPPSSNKRSF-GGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRR 65
           KQSRQ+++CSKVPPSSNKRSF GGSG GYN++N K+ ++KKAK++ L+S+E++NI A ++
Sbjct: 131 KQSRQVRLCSKVPPSSNKRSFCGGSGPGYNLSNGKSNLMKKAKMDFLKSREVQNIAAMKK 190

Query: 66  NAVQKSSDISSTKKP--MFSGRESASTS 91
           NA+Q++S  SS  KP   F G+ SAS++
Sbjct: 191 NALQRNSSSSSMMKPPGSFPGKSSASSN 218

[Close]

BLAST of Csa6G169330 vs. TrEMBL
Match: A0A0B0MEQ4_GOSAR (Elongin-A OS=Gossypium arboreum GN=F383_13223 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.1e-18
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 1


Query: 6   KQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRN 65
           KQSRQ+Q+C+KVPPSS +  F GSG GYN++N K+ I+KKAKI++++SQE+KN+ A ++ 
Sbjct: 142 KQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMKKAKIDLMKSQEVKNLAAMKKK 201

Query: 66  AVQK-SSDISSTKKPMFSGRESASTSKNT 94
           AVQ   S  + TK   F G+ SASTSK++
Sbjct: 202 AVQSYHSGTTITKSSGFCGKNSASTSKHS 230

[Close]

BLAST of Csa6G169330 vs. TrEMBL
Match: A0A0D2RUW6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.1e-18
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 1


Query: 6   KQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRN 65
           KQSRQ+Q+C+KVPPSS +  F GSG GYN++N K+ I+KKAKI++++SQE+KN+ A ++ 
Sbjct: 142 KQSRQVQLCTKVPPSSKRSFFAGSGPGYNMSNVKSNIMKKAKIDLMKSQEVKNLAAMKKK 201

Query: 66  AVQK-SSDISSTKKPMFSGRESASTSKNT 94
           AVQ   S  + TK   F G+ SASTSK++
Sbjct: 202 AVQSHHSGTTITKSSGFCGKNSASTSKHS 230

[Close]

BLAST of Csa6G169330 vs. TrEMBL
Match: A0A059DGZ7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01953 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.8e-17
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 1


Query: 6   KQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRN 65
           KQSRQ+++C+KVPPSSNKRSFGGS   YNV+  K+ I+KKAKIE L+S E+KNI A ++N
Sbjct: 147 KQSRQVRLCTKVPPSSNKRSFGGS---YNVSYLKSNIMKKAKIEALKSPEVKNIAAMKKN 206

Query: 66  AVQKSSDISSTKKPMF-SGRESASTSKNT 94
           A+Q+   IS   +P   S  +SAS+SK T
Sbjct: 207 AIQRDYSISPLMRPRGPSSGDSASSSKVT 232

[Close]

BLAST of Csa6G169330 vs. TAIR10
Match: AT2G42780.1 (AT2G42780.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 84.0 bits (206), Expect = 6.0e-17
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 1


Query: 6   KQSRQIQICSKVPPSSNKRSF-GGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRR 65
           KQSRQ ++CSK PPS  KR F G S  GYN+ + K+ I+KKAKI++L+SQE+KN+ A +R
Sbjct: 134 KQSRQTKVCSKAPPS--KRPFWGNSASGYNLGHVKSNIMKKAKIDLLKSQEVKNLTAIKR 193

Query: 66  NAVQKSSDISSTKKPMFSGRESASTSKN 93
           N +QKS  IS+ KK   S   S STS++
Sbjct: 194 NTIQKSFSISTPKKTGLSA-NSPSTSRS 218

[Close]

BLAST of Csa6G169330 vs. NCBI nr
Match: gi|700191813|gb|KGN47017.1| (hypothetical protein Csa_6G169330 [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 2.5e-49
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 1   MNILGKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIK 60
           MNILGKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIK
Sbjct: 1   MNILGKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIK 60

Query: 61  AWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW 102
           AWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW
Sbjct: 61  AWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW 101

[Close]

BLAST of Csa6G169330 vs. NCBI nr
Match: gi|449450878|ref|XP_004143189.1| (PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 2.0e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 6   KQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRN 65
           KQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRN
Sbjct: 130 KQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRN 189

Query: 66  AVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW 102
           AVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW
Sbjct: 190 AVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW 225

[Close]

BLAST of Csa6G169330 vs. NCBI nr
Match: gi|659112953|ref|XP_008456387.1| (PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo])

HSP 1 Score: 189.5 bits (480), Expect = 2.9e-45
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 6   KQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRN 65
           KQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRN
Sbjct: 130 KQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRN 189

Query: 66  AVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW 102
           AVQKSSDI STKKPMF GRESASTSKNTSTHMAKRW
Sbjct: 190 AVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKRW 225

[Close]

BLAST of Csa6G169330 vs. NCBI nr
Match: gi|743929460|ref|XP_011008965.1| (PREDICTED: uncharacterized protein LOC105114188 [Populus euphratica])

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-19
Identity = 52/89 (58.43%), Postives = 73/89 (82.02%), Query Frame = 1


Query: 5  GKQSRQIQICSKVPPSSNKRSF-GGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWR 64
          GKQSRQ+++CSKVPPSSNKRSF GGSG GYN++N K+ ++KKAK++ L+S+E++NI A R
Sbjct: 10 GKQSRQVRLCSKVPPSSNKRSFCGGSGPGYNLSNGKSNLMKKAKMDFLKSREVQNIAAMR 69

Query: 65 RNAVQKSSDISSTKKP--MFSGRESASTS 91
          +NA+Q++S  SS  KP   F G+ SAS++
Sbjct: 70 KNALQRNSSSSSMMKPPGSFPGKSSASSN 98

[Close]

BLAST of Csa6G169330 vs. NCBI nr
Match: gi|1009126773|ref|XP_015880336.1| (PREDICTED: elongin-A [Ziziphus jujuba])

HSP 1 Score: 102.8 bits (255), Expect = 3.6e-19
Identity = 52/98 (53.06%), Postives = 74/98 (75.51%), Query Frame = 1


Query: 6   KQSRQIQICSKVPPSSNKRSF-GGSGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRR 65
           KQSRQ+Q CSKVPPSSNKRSF GGSG GYNV+N K+ ++KK++IE L+S ++KN+ A +R
Sbjct: 135 KQSRQVQFCSKVPPSSNKRSFFGGSGPGYNVSNLKSNLMKKSRIEFLKSNDVKNLAAMKR 194

Query: 66  NAVQKSSDISSTKKPM-FSGRESASTSKNTSTHMAKRW 102
           N++Q++   S  KKP+  SG++ ASTS   +    +R+
Sbjct: 195 NSLQRNHSASLMKKPVTVSGKDLASTSSKHTKPAVRRF 232

The following BLAST results are available for this feature:

BLAST of Csa6G169330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF63_CUCSA	1.8e-49	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G169330 PE=4 SV=1	[more]
A9P8K1_POPTR	1.6e-18	56.82	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05560g PE=2 SV=1	[more]
A0A0B0MEQ4_GOSAR	6.1e-18	53.93	Elongin-A OS=Gossypium arboreum GN=F383_13223 PE=4 SV=1	[more]
A0A0D2RUW6_GOSRA	6.1e-18	53.93	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G004800 PE=4 SV=1	[more]
A0A059DGZ7_EUCGR	8.8e-17	57.30	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01953 PE=4 SV=1	[more]

BLAST of Csa6G169330 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42780.1	6.0e-17	53.41	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Csa6G169330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191813\|gb\|KGN47017.1\|	2.5e-49	100.00	hypothetical protein Csa_6G169330 [Cucumis sativus]	[more]
gi\|449450878\|ref\|XP_004143189.1\|	2.0e-46	100.00	PREDICTED: transcription elongation factor B polypeptide 3 [Cucumis sativus]	[more]
gi\|659112953\|ref\|XP_008456387.1\|	2.9e-45	97.92	PREDICTED: uncharacterized protein LOC103496337 [Cucumis melo]	[more]
gi\|743929460\|ref\|XP_011008965.1\|	2.1e-19	58.43	PREDICTED: uncharacterized protein LOC105114188 [Populus euphratica]	[more]
gi\|1009126773\|ref\|XP_015880336.1\|	3.6e-19	53.06	PREDICTED: elongin-A [Ziziphus jujuba]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU106394	cucumber EST collection version 3.0	transcribed_cluster
CU161968	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G169330.1	Csa6G169330.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU106394	CU106394	transcribed_cluster
CU161968	CU161968	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G169330	CSPI06G13200	Wild cucumber (PI 183967)	cpicuB314

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G169330	Cucurbita maxima (Rimu)	cmacuB142
Csa6G169330	Cucurbita maxima (Rimu)	cmacuB556
Csa6G169330	Cucurbita maxima (Rimu)	cmacuB632
Csa6G169330	Cucurbita moschata (Rifu)	cmocuB126
Csa6G169330	Cucurbita moschata (Rifu)	cmocuB512
Csa6G169330	Cucurbita moschata (Rifu)	cmocuB545
Csa6G169330	Cucurbita moschata (Rifu)	cmocuB623
Csa6G169330	Melon (DHL92) v3.5.1	cumeB426
Csa6G169330	Melon (DHL92) v3.5.1	cumeB493
Csa6G169330	Watermelon (Charleston Gray)	cuwcgB439
Csa6G169330	Watermelon (97103) v1	cuwmB514
Csa6G169330	Cucurbita pepo (Zucchini)	cpecuB293
Csa6G169330	Cucurbita pepo (Zucchini)	cpecuB685
Csa6G169330	Cucurbita pepo (Zucchini)	cpecuB744
Csa6G169330	Bottle gourd (USVL1VR-Ls)	culsiB429
Csa6G169330	Bottle gourd (USVL1VR-Ls)	culsiB416
Csa6G169330	Cucumber (Gy14) v2	cgybcuB282
Csa6G169330	Cucumber (Gy14) v2	cgybcuB285
Csa6G169330	Melon (DHL92) v3.6.1	cumedB406
Csa6G169330	Melon (DHL92) v3.6.1	cumedB473
Csa6G169330	Silver-seed gourd	carcuB0026
Csa6G169330	Silver-seed gourd	carcuB0373
Csa6G169330	Silver-seed gourd	carcuB0422
Csa6G169330	Silver-seed gourd	carcuB0562
Csa6G169330	Watermelon (97103) v2	cuwmbB429
Csa6G169330	Wax gourd	cuwgoB569
Csa6G169330	Wax gourd	cuwgoB607
Csa6G169330	Cucumber (Chinese Long) v2	cucuB169
Csa6G169330	Cucumber (Gy14) v1	cgycuB202
Csa6G169330	Cucumber (Gy14) v1	cgycuB283