Csa6G169270 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G169270
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 11416723 .. 11417391 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCCATCAACCCCTTCACCAAAATCGTTTCACTAAAGAGATCAACAACCCTCATTTTTATTTTTCACAAAAATCCCAACCCCTAACTTCCCAAGCCCATGGCTATTTCAAGACGATTACCCCTAATTCTTACCCTCGGAACAATCCTTTTCTGCTTCTTGTTCATCGGAGTTTCCGCCGCTGCTGGACCCGACTACGGCGACGACATTCACACCGTCAAGCACCCCTCTGACACTGCTGAATGCAAGCGCGAACATCTCGACAAAGGCGACCAATGCAGGGAAGAAAACGACCTCTTTGAGGACGACGATTTTGATGATACCTACAAAATCGTTAACAACATTGCCGTAACCCTATCGGCGTCCGGCAGGATACTTCAACAGGAGACAGAGGAATCGGAAGATATTCCGTCGTCGGAGGAAGAAATGGGCAACATTCTTATAGTGGGGCATTGAGCGGCCACGAAATTACTCTTTTTTTCTTTTCGGTTTTATGGTATTTGGAGGAAAGTTTTAATTTGGAATTTTATTATCGTACTTGGCTTCTTAATTAGAGCATAAGAGATATGGCACGTCCATGGTGGTGTGGATCATGTGTGGACCGGCGTCCATTGATTCGGCTAGTTAATCTTAATCATAAGTGCATTAGTAAAAATTACAAAAGTTGAGAA

mRNA sequence

ATGGCTATTTCAAGACGATTACCCCTAATTCTTACCCTCGGAACAATCCTTTTCTGCTTCTTGTTCATCGGAGTTTCCGCCGCTGCTGGACCCGACTACGGCGACGACATTCACACCGTCAAGCACCCCTCTGACACTGCTGAATGCAAGCGCGAACATCTCGACAAAGGCGACCAATGCAGGGAAGAAAACGACCTCTTTGAGGACGACGATTTTGATGATACCTACAAAATCGTTAACAACATTGCCGTAACCCTATCGGCGTCCGGCAGGATACTTCAACAGGAGACAGAGGAATCGGAAGATATTCCGTCGTCGGAGGAAGAAATGGGCAACATTCTTATAGTGGGGCATTGA

Coding sequence (CDS)

ATGGCTATTTCAAGACGATTACCCCTAATTCTTACCCTCGGAACAATCCTTTTCTGCTTCTTGTTCATCGGAGTTTCCGCCGCTGCTGGACCCGACTACGGCGACGACATTCACACCGTCAAGCACCCCTCTGACACTGCTGAATGCAAGCGCGAACATCTCGACAAAGGCGACCAATGCAGGGAAGAAAACGACCTCTTTGAGGACGACGATTTTGATGATACCTACAAAATCGTTAACAACATTGCCGTAACCCTATCGGCGTCCGGCAGGATACTTCAACAGGAGACAGAGGAATCGGAAGATATTCCGTCGTCGGAGGAAGAAATGGGCAACATTCTTATAGTGGGGCATTGA

Protein sequence

MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQCREENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQETEESEDIPSSEEEMGNILIVGH*
Homology
[Close]
BLAST of Csa6G169270 vs. TrEMBL
Match: A0A0A0KGZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G169270 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 6.8e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

Query: 1   MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQC 60
           MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQC
Sbjct: 1   MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQC 60

Query: 61  REENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQETEESEDIPSSEEEMGNILIVGH 119
           REENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQETEESEDIPSSEEEMGNILIVGH
Sbjct: 61  REENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQETEESEDIPSSEEEMGNILIVGH 118

[Close]
BLAST of Csa6G169270 vs. NCBI nr
Match: gi|700191807|gb|KGN47011.1| (hypothetical protein Csa_6G169270 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 9.8e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

Query: 1   MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQC 60
           MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQC
Sbjct: 1   MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQC 60

Query: 61  REENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQETEESEDIPSSEEEMGNILIVGH 119
           REENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQETEESEDIPSSEEEMGNILIVGH
Sbjct: 61  REENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQETEESEDIPSSEEEMGNILIVGH 118

[Close]
BLAST of Csa6G169270 vs. NCBI nr
Match: gi|658036098|ref|XP_008353592.1| (PREDICTED: protein RALF-like 17 [Malus domestica])

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-09
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 1 

Query: 1   MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQC 60
           MA+SR L L+L LGT+L     + V A A  D+GD             C  +  + GDQC
Sbjct: 1   MAVSRGL-LLLCLGTLLVSVFLVKV-AEASEDHGD-------------CHGDP-NNGDQC 60

Query: 61  RE-ENDLFEDDDFDDTYKIVNNIAVTLSA-SGRILQQETEESEDIPSSEEEMGNILIVGH 119
           +E E+D+  DDD DDTYKIVN +AVT SA +G +     E S+   + + E  +I+++GH
Sbjct: 61  QEHESDVIGDDDVDDTYKIVNKVAVTFSARTGEVEPDAAEASDPDDAEDNESSHIIVMGH 104

[Close]
BLAST of Csa6G169270 vs. NCBI nr
Match: gi|694377731|ref|XP_009365148.1| (PREDICTED: protein RALF-like 17 [Pyrus x bretschneideri])

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 1 

Query: 1   MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQC 60
           MA+SRRL L+L LGT+L     + V A A  ++GD             C  +  + GDQC
Sbjct: 1   MAVSRRL-LLLCLGTLLAGVFLVKV-AEAHENHGD-------------CHSDP-NNGDQC 60

Query: 61  RE-ENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQETEESEDIPSSEE-EMGNILIVGH 119
           RE E D   DDD DDTYKIVN +AVT SA    ++   +E  D   +E+ E  +++++GH
Sbjct: 61  REDETDAVGDDDVDDTYKIVNKVAVTFSARTGEVEPGADEVPDADDTEDNESSHVIVMGH 104

[Close]
BLAST of Csa6G169270 vs. NCBI nr
Match: gi|694377735|ref|XP_009365150.1| (PREDICTED: protein RALF-like 17 [Pyrus x bretschneideri])

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-08
Identity = 47/120 (39.17%), Postives = 67/120 (55.83%), Query Frame = 1 

Query: 1   MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQC 60
           MA+SRRL L+L LGT+L     + V A A  ++GD             C  +  + GDQC
Sbjct: 1   MAVSRRL-LLLCLGTLLAGVFLVKV-AEAHENHGD-------------CHSDP-NNGDQC 60

Query: 61  RE-ENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQETEESEDIPSSEE-EMGNILIVGH 119
           R+ E D   DDD DDTYKIVN +AVT SA    ++   +E  D   +E+ E  +++++GH
Sbjct: 61  RDDETDAVGDDDVDDTYKIVNKVAVTFSARTGEVEPGADEVPDADDTEDNESSHVIVMGH 104

[Close]
BLAST of Csa6G169270 vs. NCBI nr
Match: gi|645247411|ref|XP_008229823.1| (PREDICTED: protein RALF-like 17 [Prunus mume])

HSP 1 Score: 65.1 bits (157), Expect = 9.6e-08
Identity = 48/131 (36.64%), Postives = 72/131 (54.96%), Query Frame = 1 

Query: 1   MAISRRLPLILTLGTILFCFLFIGVSAA----AGPDYGDDIHTVKHPSDTAECKREHLDK 60
           MA+SR + L+L LGT++   + I V+ A    +GP +GD                   +K
Sbjct: 1   MAVSRGM-LLLCLGTLMVSVVLIKVAEANDHHSGPCHGDP------------------NK 60

Query: 61  GDQCRE-ENDLFEDDDFDDTYKIVNNIAVTLSASGRI--------LQQETEESEDIPSSE 119
           GDQC E E D+  DDD DDTYKIVN +AV  S +GR+          QE+EE+E    +E
Sbjct: 61  GDQCLEDEEDVIGDDDVDDTYKIVNKVAV--SFTGRLGDFEEASSTPQESEEAEP-EDAE 109

The following BLAST results are available for this feature:
BLAST of Csa6G169270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGZ4_CUCSA6.8e-61100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G169270 PE=4 SV=1[more]
BLAST of Csa6G169270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191807|gb|KGN47011.1|9.8e-61100.00hypothetical protein Csa_6G169270 [Cucumis sativus][more]
gi|658036098|ref|XP_008353592.1|1.3e-0940.00PREDICTED: protein RALF-like 17 [Malus domestica][more]
gi|694377731|ref|XP_009365148.1|1.1e-0840.00PREDICTED: protein RALF-like 17 [Pyrus x bretschneideri][more]
gi|694377735|ref|XP_009365150.1|2.5e-0839.17PREDICTED: protein RALF-like 17 [Pyrus x bretschneideri][more]
gi|645247411|ref|XP_008229823.1|9.6e-0836.64PREDICTED: protein RALF-like 17 [Prunus mume][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G169270.1Csa6G169270.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G169270Cla013506Watermelon (97103) v1cuwmB514
Csa6G169270MELO3C019718Melon (DHL92) v3.5.1cumeB426
Csa6G169270ClCG02G018180Watermelon (Charleston Gray)cuwcgB439
Csa6G169270Lsi10G015590Bottle gourd (USVL1VR-Ls)culsiB416
Csa6G169270MELO3C019718.2Melon (DHL92) v3.6.1cumedB406
Csa6G169270Cla97C02G044010Watermelon (97103) v2cuwmbB429
Csa6G169270Bhi10G000792Wax gourdcuwgoB607
Csa6G169270CSPI06G13130Wild cucumber (PI 183967)cpicuB314
Csa6G169270CmaCh02G000560Cucurbita maxima (Rimu)cmacuB632
Csa6G169270CmaCh20G002430Cucurbita maxima (Rimu)cmacuB556
Csa6G169270CmoCh02G000560Cucurbita moschata (Rifu)cmocuB623
Csa6G169270CmoCh20G002630Cucurbita moschata (Rifu)cmocuB545
Csa6G169270Cp4.1LG16g07370Cucurbita pepo (Zucchini)cpecuB293
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G169270Wax gourdcuwgoB569
Csa6G169270Cucumber (Chinese Long) v2cucuB169
Csa6G169270Cucumber (Gy14) v1cgycuB202
Csa6G169270Cucumber (Gy14) v1cgycuB283
Csa6G169270Cucurbita maxima (Rimu)cmacuB142
Csa6G169270Cucurbita moschata (Rifu)cmocuB126
Csa6G169270Cucurbita moschata (Rifu)cmocuB512
Csa6G169270Melon (DHL92) v3.5.1cumeB493
Csa6G169270Cucurbita pepo (Zucchini)cpecuB685
Csa6G169270Cucurbita pepo (Zucchini)cpecuB744
Csa6G169270Bottle gourd (USVL1VR-Ls)culsiB429
Csa6G169270Cucumber (Gy14) v2cgybcuB282
Csa6G169270Cucumber (Gy14) v2cgybcuB285
Csa6G169270Melon (DHL92) v3.6.1cumedB473
Csa6G169270Silver-seed gourdcarcuB0026
Csa6G169270Silver-seed gourdcarcuB0373
Csa6G169270Silver-seed gourdcarcuB0422
Csa6G169270Silver-seed gourdcarcuB0562