Csa6G159180 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G159180
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 11129960 .. 11130298 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTTTCCCTTTCCTCCGACATAGACCATGCGACTCACGACATTTCATTTTTTATGTCTATTCTTTGCACATTCTCAGTTCCAACCTTCACAACTCTCATTTTCGACCTTCGCATGTTTCAGCCAGCCAACGTTTTGGCCTTCGCATTAGCAAGTTTGCACTTTGCAGACCGCATCGTTTCCAATATTTTTTGTCGGTTCCCCTTCACAGTTCTCAATTTCGGCCTTCGCACGTTTCGATCGATGAACGTTCTGACCTTCACATTCGCAACTTCGCAAACCACACTCAGTTTAGGTTTCGTTCCCTTCACAACACTGCAAGTTCGTAGATCGTAA

mRNA sequence

ATGTCTTTTTCCCTTTCCTCCGACATAGACCATGCGACTCACGACATTTCATTTTTTATGTCTATTCTTTGCACATTCTCAGTTCCAACCTTCACAACTCTCATTTTCGACCTTCGCATGTTTCAGCCAGCCAACGTTTTGGCCTTCGCATTAGCAAGTTTGCACTTTGCAGACCGCATCGTTTCCAATATTTTTTGTCGGTTCCCCTTCACAGTTCTCAATTTCGGCCTTCGCACGTTTCGATCGATGAACGTTCTGACCTTCACATTCGCAACTTCGCAAACCACACTCAGTTTAGGTTTCGTTCCCTTCACAACACTGCAAGTTCGTAGATCGTAA

Coding sequence (CDS)

ATGTCTTTTTCCCTTTCCTCCGACATAGACCATGCGACTCACGACATTTCATTTTTTATGTCTATTCTTTGCACATTCTCAGTTCCAACCTTCACAACTCTCATTTTCGACCTTCGCATGTTTCAGCCAGCCAACGTTTTGGCCTTCGCATTAGCAAGTTTGCACTTTGCAGACCGCATCGTTTCCAATATTTTTTGTCGGTTCCCCTTCACAGTTCTCAATTTCGGCCTTCGCACGTTTCGATCGATGAACGTTCTGACCTTCACATTCGCAACTTCGCAAACCACACTCAGTTTAGGTTTCGTTCCCTTCACAACACTGCAAGTTCGTAGATCGTAA

Protein sequence

MSFSLSSDIDHATHDISFFMSILCTFSVPTFTTLIFDLRMFQPANVLAFALASLHFADRIVSNIFCRFPFTVLNFGLRTFRSMNVLTFTFATSQTTLSLGFVPFTTLQVRRS*
Homology
[Close]
BLAST of Csa6G159180 vs. TrEMBL
Match: A0A0A0KBE6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G159180 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.4e-55
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 

Query: 1   MSFSLSSDIDHATHDISFFMSILCTFSVPTFTTLIFDLRMFQPANVLAFALASLHFADRI 60
           MSFSLSSDIDHATHDISFFMSILCTFSVPTFTTLIFDLRMFQPANVLAFALASLHFADRI
Sbjct: 1   MSFSLSSDIDHATHDISFFMSILCTFSVPTFTTLIFDLRMFQPANVLAFALASLHFADRI 60

Query: 61  VSNIFCRFPFTVLNFGLRTFRSMNVLTFTFATSQTTLSLGFVPFTTLQVRRS 113
           VSNIFCRFPFTVLNFGLRTFRSMNVLTFTFATSQTTLSLGFVPFTTLQVRRS
Sbjct: 61  VSNIFCRFPFTVLNFGLRTFRSMNVLTFTFATSQTTLSLGFVPFTTLQVRRS 112

[Close]
BLAST of Csa6G159180 vs. NCBI nr
Match: gi|700191791|gb|KGN46995.1| (hypothetical protein Csa_6G159180 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 2.0e-55
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 

Query: 1   MSFSLSSDIDHATHDISFFMSILCTFSVPTFTTLIFDLRMFQPANVLAFALASLHFADRI 60
           MSFSLSSDIDHATHDISFFMSILCTFSVPTFTTLIFDLRMFQPANVLAFALASLHFADRI
Sbjct: 1   MSFSLSSDIDHATHDISFFMSILCTFSVPTFTTLIFDLRMFQPANVLAFALASLHFADRI 60

Query: 61  VSNIFCRFPFTVLNFGLRTFRSMNVLTFTFATSQTTLSLGFVPFTTLQVRRS 113
           VSNIFCRFPFTVLNFGLRTFRSMNVLTFTFATSQTTLSLGFVPFTTLQVRRS
Sbjct: 61  VSNIFCRFPFTVLNFGLRTFRSMNVLTFTFATSQTTLSLGFVPFTTLQVRRS 112

The following BLAST results are available for this feature:
BLAST of Csa6G159180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBE6_CUCSA1.4e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G159180 PE=4 SV=1[more]
BLAST of Csa6G159180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191791|gb|KGN46995.1|2.0e-55100.00hypothetical protein Csa_6G159180 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU090377cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G159180.1Csa6G159180.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU090377CU090377transcribed_cluster