Csa6G157110 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G157110
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 11039043 .. 11039530 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGGTGCCTCTCTACTTTAGCCTCTAAGAGGCAAGATCAATGGCGTAGGTAATTACAAACAATGCCTGCCTTGAATTTCATTCTGTACCATTTGTATGTTAGCTTCATAATGGGCCTTTCTAGCATTCCACGCAACAAGGAAAGAATATCCCAACTAGTAACTTGGGGTAAAACAAGCATCCCTACTCTTTTTCCTTCAATGGCTCAACATGAAAAAAGAGAGGAGAGAGCAAATGACCGATATGTCAGAAGTTCTGATTATTCTGTTTCTTTAATGTCATCTCTAGGTGTCAGAAAAATAACAGAGAACTTATGCCTCCTCAACTCTCTGCTCTTTTCACTTCAACGGAACCAACATAAAGGAGATTTGAAATCATCGAATGGATATCTGTGTTATCCTGTTTTGTTAATGTTATCTCTAGGTGTTAGAAAATGGGAAAGAGAACGCCTGCTCAACTATCCCAGAAGTAGCTTACTTTTCGTTTGA

mRNA sequence

ATGCCTGCCTTGAATTTCATTCTGTACCATTTGTATGTTAGCTTCATAATGGGCCTTTCTAGCATTCCACGCAACAAGGAAAGAATATCCCAACTAGTAACTTGGGGTAAAACAAGCATCCCTACTCTTTTTCCTTCAATGGCTCAACATGAAAAAAGAGAGGAGAGAGCAAATGACCGATATGTCAGAAGTTCTGATTATTCTGTTTCTTTAATGTCATCTCTAGGTGTCAGAAAAATAACAGAGAACTTATGCCTCCTCAACTCTCTGCTCTTTTCACTTCAACGGAACCAACATAAAGGAGATTTGAAATCATCGAATGGATATCTGTGTTATCCTGTTTTGTTAATGTTATCTCTAGGTGTTAGAAAATGGGAAAGAGAACGCCTGCTCAACTATCCCAGAAGTAGCTTACTTTTCGTTTGA

Coding sequence (CDS)

ATGCCTGCCTTGAATTTCATTCTGTACCATTTGTATGTTAGCTTCATAATGGGCCTTTCTAGCATTCCACGCAACAAGGAAAGAATATCCCAACTAGTAACTTGGGGTAAAACAAGCATCCCTACTCTTTTTCCTTCAATGGCTCAACATGAAAAAAGAGAGGAGAGAGCAAATGACCGATATGTCAGAAGTTCTGATTATTCTGTTTCTTTAATGTCATCTCTAGGTGTCAGAAAAATAACAGAGAACTTATGCCTCCTCAACTCTCTGCTCTTTTCACTTCAACGGAACCAACATAAAGGAGATTTGAAATCATCGAATGGATATCTGTGTTATCCTGTTTTGTTAATGTTATCTCTAGGTGTTAGAAAATGGGAAAGAGAACGCCTGCTCAACTATCCCAGAAGTAGCTTACTTTTCGTTTGA

Protein sequence

MPALNFILYHLYVSFIMGLSSIPRNKERISQLVTWGKTSIPTLFPSMAQHEKREERANDRYVRSSDYSVSLMSSLGVRKITENLCLLNSLLFSLQRNQHKGDLKSSNGYLCYPVLLMLSLGVRKWERERLLNYPRSSLLFV*
Homology
[Close]
BLAST of Csa6G157110 vs. TrEMBL
Match: A0A0A0KBA5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G157110 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 2.4e-73
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1 

Query: 1   MPALNFILYHLYVSFIMGLSSIPRNKERISQLVTWGKTSIPTLFPSMAQHEKREERANDR 60
           MPALNFILYHLYVSFIMGLSSIPRNKERISQLVTWGKTSIPTLFPSMAQHEKREERANDR
Sbjct: 1   MPALNFILYHLYVSFIMGLSSIPRNKERISQLVTWGKTSIPTLFPSMAQHEKREERANDR 60

Query: 61  YVRSSDYSVSLMSSLGVRKITENLCLLNSLLFSLQRNQHKGDLKSSNGYLCYPVLLMLSL 120
           YVRSSDYSVSLMSSLGVRKITENLCLLNSLLFSLQRNQHKGDLKSSNGYLCYPVLLMLSL
Sbjct: 61  YVRSSDYSVSLMSSLGVRKITENLCLLNSLLFSLQRNQHKGDLKSSNGYLCYPVLLMLSL 120

Query: 121 GVRKWERERLLNYPRSSLLFV 142
           GVRKWERERLLNYPRSSLLFV
Sbjct: 121 GVRKWERERLLNYPRSSLLFV 141

[Close]
BLAST of Csa6G157110 vs. NCBI nr
Match: gi|700191781|gb|KGN46985.1| (hypothetical protein Csa_6G157110 [Cucumis sativus])

HSP 1 Score: 282.7 bits (722), Expect = 3.5e-73
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1 

Query: 1   MPALNFILYHLYVSFIMGLSSIPRNKERISQLVTWGKTSIPTLFPSMAQHEKREERANDR 60
           MPALNFILYHLYVSFIMGLSSIPRNKERISQLVTWGKTSIPTLFPSMAQHEKREERANDR
Sbjct: 1   MPALNFILYHLYVSFIMGLSSIPRNKERISQLVTWGKTSIPTLFPSMAQHEKREERANDR 60

Query: 61  YVRSSDYSVSLMSSLGVRKITENLCLLNSLLFSLQRNQHKGDLKSSNGYLCYPVLLMLSL 120
           YVRSSDYSVSLMSSLGVRKITENLCLLNSLLFSLQRNQHKGDLKSSNGYLCYPVLLMLSL
Sbjct: 61  YVRSSDYSVSLMSSLGVRKITENLCLLNSLLFSLQRNQHKGDLKSSNGYLCYPVLLMLSL 120

Query: 121 GVRKWERERLLNYPRSSLLFV 142
           GVRKWERERLLNYPRSSLLFV
Sbjct: 121 GVRKWERERLLNYPRSSLLFV 141

The following BLAST results are available for this feature:
BLAST of Csa6G157110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBA5_CUCSA2.4e-73100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G157110 PE=4 SV=1[more]
BLAST of Csa6G157110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191781|gb|KGN46985.1|3.5e-73100.00hypothetical protein Csa_6G157110 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU090377cucumber EST collection version 3.0transcribed_cluster
CU174522cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G157110.1Csa6G157110.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU090377CU090377transcribed_cluster
CU174522CU174522transcribed_cluster