Csa6G148220 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G148220
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 10334346 .. 10334608 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGGAAATGGTTTGAAGGAAATGAGTTGCGAATCCTTTAAAAAACATGGGTTTGCTCTCTTCAAAGCAAGAAGAGACATGAGTCTCCTCAAAAGCCTCATTTGGATTATTTTAAGAGATACCCTTTTAAATGTTTTATCTAGAATGGAGAAATCTGTTCCTTCCTGGAACAAAAGAAACTTGGCTTCACGTGTGAGAAGCCTTGGAAACCGTGAGGGTTTTAGGTCTAAATTTAAGCCCGAGTAGATTTTTCAGCTCTG

mRNA sequence

ATGCCTGGAAATGGTTTGAAGGAAATGAGTTGCGAATCCTTTAAAAAACATGGGTTTGCTCTCTTCAAAGCAAGAAGAGACATGAGTCTCCTCAAAAGCCTCATTTGGATTATTTTAAGAGATACCCTTTTAAATGTTTTATCTAGAATGGAGAAATCTGTTCCTTCCTGGAACAAAAGAAACTTGGCTTCACGTGTGAGAAGCCTTGGAAACCGTGAGGGTTTTAGGTCTAAATTTAAGCCCGAGTAG

Coding sequence (CDS)

ATGCCTGGAAATGGTTTGAAGGAAATGAGTTGCGAATCCTTTAAAAAACATGGGTTTGCTCTCTTCAAAGCAAGAAGAGACATGAGTCTCCTCAAAAGCCTCATTTGGATTATTTTAAGAGATACCCTTTTAAATGTTTTATCTAGAATGGAGAAATCTGTTCCTTCCTGGAACAAAAGAAACTTGGCTTCACGTGTGAGAAGCCTTGGAAACCGTGAGGGTTTTAGGTCTAAATTTAAGCCCGAGTAG

Protein sequence

MPGNGLKEMSCESFKKHGFALFKARRDMSLLKSLIWIILRDTLLNVLSRMEKSVPSWNKRNLASRVRSLGNREGFRSKFKPE*
Homology
[Close]
BLAST of Csa6G148220 vs. TrEMBL
Match: A0A0A0KAW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G148220 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 8.7e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MPGNGLKEMSCESFKKHGFALFKARRDMSLLKSLIWIILRDTLLNVLSRMEKSVPSWNKR 60
          MPGNGLKEMSCESFKKHGFALFKARRDMSLLKSLIWIILRDTLLNVLSRMEKSVPSWNKR
Sbjct: 1  MPGNGLKEMSCESFKKHGFALFKARRDMSLLKSLIWIILRDTLLNVLSRMEKSVPSWNKR 60

Query: 61 NLASRVRSLGNREGFRSKFKPE 83
          NLASRVRSLGNREGFRSKFKPE
Sbjct: 61 NLASRVRSLGNREGFRSKFKPE 82

[Close]
BLAST of Csa6G148220 vs. NCBI nr
Match: gi|700191676|gb|KGN46880.1| (hypothetical protein Csa_6G148220 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MPGNGLKEMSCESFKKHGFALFKARRDMSLLKSLIWIILRDTLLNVLSRMEKSVPSWNKR 60
          MPGNGLKEMSCESFKKHGFALFKARRDMSLLKSLIWIILRDTLLNVLSRMEKSVPSWNKR
Sbjct: 1  MPGNGLKEMSCESFKKHGFALFKARRDMSLLKSLIWIILRDTLLNVLSRMEKSVPSWNKR 60

Query: 61 NLASRVRSLGNREGFRSKFKPE 83
          NLASRVRSLGNREGFRSKFKPE
Sbjct: 61 NLASRVRSLGNREGFRSKFKPE 82

The following BLAST results are available for this feature:
BLAST of Csa6G148220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAW7_CUCSA8.7e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G148220 PE=4 SV=1[more]
BLAST of Csa6G148220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191676|gb|KGN46880.1|1.2e-38100.00hypothetical protein Csa_6G148220 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G148220.1Csa6G148220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G148220Melon (DHL92) v3.6.1cumedB403
Csa6G148220Melon (DHL92) v3.6.1cumedB466
Csa6G148220Melon (DHL92) v3.6.1cumedB489
Csa6G148220Silver-seed gourdcarcuB0279
Csa6G148220Silver-seed gourdcarcuB0371
Csa6G148220Silver-seed gourdcarcuB0942
Csa6G148220Watermelon (97103) v2cuwmbB419
Csa6G148220Watermelon (97103) v2cuwmbB426
Csa6G148220Watermelon (97103) v2cuwmbB456
Csa6G148220Wax gourdcuwgoB606
Csa6G148220Wax gourdcuwgoB633
Csa6G148220Cucumber (Chinese Long) v2cucuB115
Csa6G148220Cucumber (Chinese Long) v2cucuB168
Csa6G148220Cucumber (Gy14) v1cgycuB168
Csa6G148220Cucumber (Gy14) v1cgycuB440
Csa6G148220Cucumber (Gy14) v1cgycuB541
Csa6G148220Cucurbita maxima (Rimu)cmacuB268
Csa6G148220Cucurbita maxima (Rimu)cmacuB554
Csa6G148220Cucurbita maxima (Rimu)cmacuB631
Csa6G148220Cucurbita moschata (Rifu)cmocuB544
Csa6G148220Cucurbita moschata (Rifu)cmocuB621
Csa6G148220Cucurbita moschata (Rifu)cmocuB830
Csa6G148220Melon (DHL92) v3.5.1cumeB413
Csa6G148220Melon (DHL92) v3.5.1cumeB486
Csa6G148220Melon (DHL92) v3.5.1cumeB509
Csa6G148220Watermelon (Charleston Gray)cuwcgB426
Csa6G148220Watermelon (Charleston Gray)cuwcgB436
Csa6G148220Watermelon (Charleston Gray)cuwcgB465
Csa6G148220Watermelon (97103) v1cuwmB453
Csa6G148220Watermelon (97103) v1cuwmB506
Csa6G148220Watermelon (97103) v1cuwmB511
Csa6G148220Cucurbita pepo (Zucchini)cpecuB291
Csa6G148220Cucurbita pepo (Zucchini)cpecuB747
Csa6G148220Bottle gourd (USVL1VR-Ls)culsiB412
Csa6G148220Bottle gourd (USVL1VR-Ls)culsiB436
Csa6G148220Bottle gourd (USVL1VR-Ls)culsiB447
Csa6G148220Bottle gourd (USVL1VR-Ls)culsiB449
Csa6G148220Cucumber (Gy14) v2cgybcuB139
Csa6G148220Cucumber (Gy14) v2cgybcuB282
Csa6G148220Cucumber (Gy14) v2cgybcuB283