Csa6G136550 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G136550
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 9562988 .. 9563465 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAAAGATCTTCCAACTTCGTGAGTCTTCTGAGCTCTCTTTAGTACTGCCCTAGGAGTACTTTTCCTTGTGGGTCCTCCTTCTCTTAGGAAGTTAGGGCCATTCTAGTGGGTTCCCCCTCCTATGAGCTTCTCTTAAGAGGCCAAACTCTCTCTAATGGATCCTTCTTCTATGAGCTTCTCTTAAGAGACTAGACTCTTCTTAGTGAGTCCTCCTTTGGTAAGCTCTTCTTAGGAGGTTAGACTCTCCTTTGTGGGGTCTTCCTCCGATCCTATGACTCTTCTTAATAGATTAGGTTCTCCTACTGGGTATTCCTTTTATGAGCTCAAACAAGCTTACTTAGACTTACCTTATGGGTTTGTTGAGCTACCATTGAGCTTGCTTAGGTTCACCTCACGAGTCTACCACAAGCTCTTATTAGGCTCGCTTAAGATACCCCATGAGGTCCACCGAGCTACTATTAAGCTTGCTTAG

mRNA sequence

ATGGCTCAAAGATCTTCCAACTTCGAGGTTAGACTCTCCTTTGTGGGGTCTTCCTCCGATCCTATGACTCTTCTTAATAGATTAGGTTCTCCTACTGGGTATTCCTTTTATGAGCTCAAACAAGCTTACTTAGACTTACCTTATGGGTTTGTTGAGCTACCATTGAGCTTGCTTAGGTTCACCTCACGAGTCTACCACAAGCTCTTATTAGGCTCGCTTAAGATACCCCATGAGGTCCACCGAGCTACTATTAAGCTTGCTTAG

Coding sequence (CDS)

ATGGCTCAAAGATCTTCCAACTTCGAGGTTAGACTCTCCTTTGTGGGGTCTTCCTCCGATCCTATGACTCTTCTTAATAGATTAGGTTCTCCTACTGGGTATTCCTTTTATGAGCTCAAACAAGCTTACTTAGACTTACCTTATGGGTTTGTTGAGCTACCATTGAGCTTGCTTAGGTTCACCTCACGAGTCTACCACAAGCTCTTATTAGGCTCGCTTAAGATACCCCATGAGGTCCACCGAGCTACTATTAAGCTTGCTTAG

Protein sequence

MAQRSSNFEVRLSFVGSSSDPMTLLNRLGSPTGYSFYELKQAYLDLPYGFVELPLSLLRFTSRVYHKLLLGSLKIPHEVHRATIKLA*
Homology
[Close]
BLAST of Csa6G136550 vs. TrEMBL
Match: A0A0A0KGA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G136550 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 7.5e-41
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MAQRSSNFEVRLSFVGSSSDPMTLLNRLGSPTGYSFYELKQAYLDLPYGFVELPLSLLRF 60
          MAQRSSNFEVRLSFVGSSSDPMTLLNRLGSPTGYSFYELKQAYLDLPYGFVELPLSLLRF
Sbjct: 1  MAQRSSNFEVRLSFVGSSSDPMTLLNRLGSPTGYSFYELKQAYLDLPYGFVELPLSLLRF 60

Query: 61 TSRVYHKLLLGSLKIPHEVHRATIKLA 88
          TSRVYHKLLLGSLKIPHEVHRATIKLA
Sbjct: 61 TSRVYHKLLLGSLKIPHEVHRATIKLA 87

[Close]
BLAST of Csa6G136550 vs. NCBI nr
Match: gi|700191597|gb|KGN46801.1| (hypothetical protein Csa_6G136550 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-40
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MAQRSSNFEVRLSFVGSSSDPMTLLNRLGSPTGYSFYELKQAYLDLPYGFVELPLSLLRF 60
          MAQRSSNFEVRLSFVGSSSDPMTLLNRLGSPTGYSFYELKQAYLDLPYGFVELPLSLLRF
Sbjct: 1  MAQRSSNFEVRLSFVGSSSDPMTLLNRLGSPTGYSFYELKQAYLDLPYGFVELPLSLLRF 60

Query: 61 TSRVYHKLLLGSLKIPHEVHRATIKLA 88
          TSRVYHKLLLGSLKIPHEVHRATIKLA
Sbjct: 61 TSRVYHKLLLGSLKIPHEVHRATIKLA 87

The following BLAST results are available for this feature:
BLAST of Csa6G136550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGA9_CUCSA7.5e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G136550 PE=4 SV=1[more]
BLAST of Csa6G136550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191597|gb|KGN46801.1|1.1e-40100.00hypothetical protein Csa_6G136550 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU127289cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G136550.1Csa6G136550.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU127289CU127289transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G136550CSPI06G11110Wild cucumber (PI 183967)cpicuB314
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G136550Cucumber (Chinese Long) v2cucuB172
Csa6G136550Cucumber (Gy14) v1cgycuB155
Csa6G136550Cucumber (Gy14) v1cgycuB340
Csa6G136550Cucurbita maxima (Rimu)cmacuB143
Csa6G136550Cucurbita maxima (Rimu)cmacuB522
Csa6G136550Cucurbita maxima (Rimu)cmacuB563
Csa6G136550Cucurbita moschata (Rifu)cmocuB129
Csa6G136550Cucurbita moschata (Rifu)cmocuB514
Csa6G136550Cucurbita moschata (Rifu)cmocuB553
Csa6G136550Melon (DHL92) v3.5.1cumeB443
Csa6G136550Melon (DHL92) v3.5.1cumeB460
Csa6G136550Watermelon (Charleston Gray)cuwcgB418
Csa6G136550Watermelon (Charleston Gray)cuwcgB452
Csa6G136550Watermelon (97103) v1cuwmB446
Csa6G136550Watermelon (97103) v1cuwmB526
Csa6G136550Cucurbita pepo (Zucchini)cpecuB252
Csa6G136550Cucurbita pepo (Zucchini)cpecuB282
Csa6G136550Cucurbita pepo (Zucchini)cpecuB688
Csa6G136550Bottle gourd (USVL1VR-Ls)culsiB407
Csa6G136550Bottle gourd (USVL1VR-Ls)culsiB426
Csa6G136550Cucumber (Gy14) v2cgybcuB282
Csa6G136550Cucumber (Gy14) v2cgybcuB322
Csa6G136550Melon (DHL92) v3.6.1cumedB424
Csa6G136550Melon (DHL92) v3.6.1cumedB441
Csa6G136550Silver-seed gourdcarcuB0367
Csa6G136550Silver-seed gourdcarcuB0423
Csa6G136550Silver-seed gourdcarcuB0560
Csa6G136550Watermelon (97103) v2cuwmbB442
Csa6G136550Watermelon (97103) v2cuwmbB509
Csa6G136550Wax gourdcuwgoB562
Csa6G136550Wax gourdcuwgoB597