Csa6G127450 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G127450
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 8904698 .. 8904979 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTCATCTTCTGCAACTTCAAATCGGCTCTCAATCTTGCAATGAACTTATCAGCTTTACCGTTGACATCCGGGCTTCAACAAAGCATTGCAATTGTTTAGTCTTGCCCGAACTTTCTTTCGTTGAATTCTTTTTGTTGCAGAGGACGAAACTGGAATCGGTTTGATGAAGAAGCTCCTCTACACGAACAAAAACCTGAATACTTCCCTACTTTGTATCGAATGCATGAAGAGTTTGAAGGTTTGAAGAGGACGAAGCTGGAAGCGATTCGGGTTTGA

mRNA sequence

ATGGAGTTCATCTTCTGCAACTTCAAATCGGCTCTCAATCTTGCAATGAACTTATCAGCTTTACCAGGACGAAACTGGAATCGGTTTGATGAAGAAGCTCCTCTACACGAACAAAAACCTGAATACTTCCCTACTTTGTATCGAATGCATGAAGAGTTTGAAGGTTTGAAGAGGACGAAGCTGGAAGCGATTCGGGTTTGA

Coding sequence (CDS)

ATGGAGTTCATCTTCTGCAACTTCAAATCGGCTCTCAATCTTGCAATGAACTTATCAGCTTTACCAGGACGAAACTGGAATCGGTTTGATGAAGAAGCTCCTCTACACGAACAAAAACCTGAATACTTCCCTACTTTGTATCGAATGCATGAAGAGTTTGAAGGTTTGAAGAGGACGAAGCTGGAAGCGATTCGGGTTTGA

Protein sequence

MEFIFCNFKSALNLAMNLSALPGRNWNRFDEEAPLHEQKPEYFPTLYRMHEEFEGLKRTKLEAIRV*
Homology
[Close]
BLAST of Csa6G127450 vs. TrEMBL
Match: A0A0A0KB32_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127450 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.4e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 

Query: 1  MEFIFCNFKSALNLAMNLSALPGRNWNRFDEEAPLHEQKPEYFPTLYRMHEEFEGLKRTK 60
          MEFIFCNFKSALNLAMNLSALPGRNWNRFDEEAPLHEQKPEYFPTLYRMHEEFEGLKRTK
Sbjct: 1  MEFIFCNFKSALNLAMNLSALPGRNWNRFDEEAPLHEQKPEYFPTLYRMHEEFEGLKRTK 60

Query: 61 LEAIRV 67
          LEAIRV
Sbjct: 61 LEAIRV 66

[Close]
BLAST of Csa6G127450 vs. NCBI nr
Match: gi|700191529|gb|KGN46733.1| (hypothetical protein Csa_6G127450 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 7.7e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 

Query: 1  MEFIFCNFKSALNLAMNLSALPGRNWNRFDEEAPLHEQKPEYFPTLYRMHEEFEGLKRTK 60
          MEFIFCNFKSALNLAMNLSALPGRNWNRFDEEAPLHEQKPEYFPTLYRMHEEFEGLKRTK
Sbjct: 1  MEFIFCNFKSALNLAMNLSALPGRNWNRFDEEAPLHEQKPEYFPTLYRMHEEFEGLKRTK 60

Query: 61 LEAIRV 67
          LEAIRV
Sbjct: 61 LEAIRV 66

The following BLAST results are available for this feature:
BLAST of Csa6G127450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB32_CUCSA5.4e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127450 PE=4 SV=1[more]
BLAST of Csa6G127450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191529|gb|KGN46733.1|7.7e-31100.00hypothetical protein Csa_6G127450 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G127450.1Csa6G127450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G127450CSPI06G10360Wild cucumber (PI 183967)cpicuB314
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G127450Melon (DHL92) v3.6.1cumedB427
Csa6G127450Silver-seed gourdcarcuB0030
Csa6G127450Silver-seed gourdcarcuB0447
Csa6G127450Watermelon (97103) v2cuwmbB444
Csa6G127450Wax gourdcuwgoB599
Csa6G127450Cucumber (Gy14) v1cgycuB155
Csa6G127450Cucurbita maxima (Rimu)cmacuB567
Csa6G127450Cucurbita maxima (Rimu)cmacuB621
Csa6G127450Cucurbita moschata (Rifu)cmocuB558
Csa6G127450Cucurbita moschata (Rifu)cmocuB613
Csa6G127450Melon (DHL92) v3.5.1cumeB446
Csa6G127450Watermelon (Charleston Gray)cuwcgB454
Csa6G127450Watermelon (97103) v1cuwmB527
Csa6G127450Cucurbita pepo (Zucchini)cpecuB287
Csa6G127450Cucurbita pepo (Zucchini)cpecuB757
Csa6G127450Cucumber (Gy14) v2cgybcuB282