Csa6G127380 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G127380
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 8845622 .. 8845921 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATTCTACACATTCTTCTTCAGATGATCATGGAGATCCTTCATCAGATGCGAGAGAACCATCTAATGATCATGGTGAATTACCTAATCAAGAATCTCTTGAAGAAACTACAAGTCATCATTCTGATGATCAATTGCAAGTTGCAAGTGATGTGAATAATGTTCCTCCAGATTCTAATAGCCATAATCATGATGCTCCTATTTTGCTGCCACTTACAAAGTCTACAAGAGTGACCAAGGCACCTTCTTATTTCAAGCCTACCATTGCAACCTTATGGTCATGGACTCCAATCTAG

mRNA sequence

ATGGCTGATTCTACACATTCTTCTTCAGATGATCATGGAGATCCTTCATCAGATGCGAGAGAACCATCTAATGATCATGGTGAATTACCTAATCAAGAATCTCTTGAAGAAACTACAAGTCATCATTCTGATGATCAATTGCAAGTTGCAAGTGATGTGAATAATGTTCCTCCAGATTCTAATAGCCATAATCATGATGCTCCTATTTTGCTGCCACTTACAAAGTCTACAAGAGTGACCAAGGCACCTTCTTATTTCAAGCCTACCATTGCAACCTTATGGTCATGGACTCCAATCTAG

Coding sequence (CDS)

ATGGCTGATTCTACACATTCTTCTTCAGATGATCATGGAGATCCTTCATCAGATGCGAGAGAACCATCTAATGATCATGGTGAATTACCTAATCAAGAATCTCTTGAAGAAACTACAAGTCATCATTCTGATGATCAATTGCAAGTTGCAAGTGATGTGAATAATGTTCCTCCAGATTCTAATAGCCATAATCATGATGCTCCTATTTTGCTGCCACTTACAAAGTCTACAAGAGTGACCAAGGCACCTTCTTATTTCAAGCCTACCATTGCAACCTTATGGTCATGGACTCCAATCTAG

Protein sequence

MADSTHSSSDDHGDPSSDAREPSNDHGELPNQESLEETTSHHSDDQLQVASDVNNVPPDSNSHNHDAPILLPLTKSTRVTKAPSYFKPTIATLWSWTPI*

Homology

[Close]

BLAST of Csa6G127380 vs. TrEMBL
Match: A0A0A0KG49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127380 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1


Query: 1   MADSTHSSSDDHGDPSSDAREPSNDHGELPNQESLEETTSHHSDDQLQVASDVNNVPPDS 60
           MADSTHSSSDDHGDPSSDAREPSNDHGELPNQESLEETTSHHSDDQLQVASDVNNVPPDS
Sbjct: 1   MADSTHSSSDDHGDPSSDAREPSNDHGELPNQESLEETTSHHSDDQLQVASDVNNVPPDS 60

Query: 61  NSHNHDAPILLPLTKSTRVTKAPSYFKPTIATLWSWTPI 100
           NSHNHDAPILLPLTKSTRVTKAPSYFKPTIATLWSWTPI
Sbjct: 61  NSHNHDAPILLPLTKSTRVTKAPSYFKPTIATLWSWTPI 99

[Close]

BLAST of Csa6G127380 vs. NCBI nr
Match: gi|700191522|gb|KGN46726.1| (hypothetical protein Csa_6G127380 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1


Query: 1   MADSTHSSSDDHGDPSSDAREPSNDHGELPNQESLEETTSHHSDDQLQVASDVNNVPPDS 60
           MADSTHSSSDDHGDPSSDAREPSNDHGELPNQESLEETTSHHSDDQLQVASDVNNVPPDS
Sbjct: 1   MADSTHSSSDDHGDPSSDAREPSNDHGELPNQESLEETTSHHSDDQLQVASDVNNVPPDS 60

Query: 61  NSHNHDAPILLPLTKSTRVTKAPSYFKPTIATLWSWTPI 100
           NSHNHDAPILLPLTKSTRVTKAPSYFKPTIATLWSWTPI
Sbjct: 61  NSHNHDAPILLPLTKSTRVTKAPSYFKPTIATLWSWTPI 99

The following BLAST results are available for this feature:

BLAST of Csa6G127380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG49_CUCSA	1.1e-51	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127380 PE=4 SV=1	[more]

BLAST of Csa6G127380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191522\|gb\|KGN46726.1\|	1.5e-51	100.00	hypothetical protein Csa_6G127380 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009534	chloroplast thylakoid
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003743	translation initiation factor activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU085132	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G127380.1	Csa6G127380.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU085132	CU085132	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G127380	CsGy6G010420	Cucumber (Gy14) v2	cgybcuB282

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G127380	Cucurbita maxima (Rimu)	cmacuB568
Csa6G127380	Cucurbita maxima (Rimu)	cmacuB624
Csa6G127380	Cucurbita moschata (Rifu)	cmocuB559
Csa6G127380	Cucurbita moschata (Rifu)	cmocuB615
Csa6G127380	Melon (DHL92) v3.5.1	cumeB446
Csa6G127380	Watermelon (97103) v1	cuwmB530
Csa6G127380	Cucurbita pepo (Zucchini)	cpecuB289
Csa6G127380	Cucurbita pepo (Zucchini)	cpecuB761
Csa6G127380	Bottle gourd (USVL1VR-Ls)	culsiB424
Csa6G127380	Melon (DHL92) v3.6.1	cumedB427
Csa6G127380	Silver-seed gourd	carcuB0380
Csa6G127380	Silver-seed gourd	carcuB0870
Csa6G127380	Watermelon (97103) v2	cuwmbB446
Csa6G127380	Wax gourd	cuwgoB600
Csa6G127380	Cucumber (Gy14) v1	cgycuB155