Csa6G127370 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G127370
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 8842256 .. 8842584 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCCCTAAAATGTGTTACACTTTATGACATTCTGAAGAAGACTAACAATGCATGCTCCATTTCTCTACACTACGCCTATGTCCACTGGCCCTTTATTTCACATAATGTCGATTTCTTTTCTAATGTCAAATTCCATCATCACCAATGAATTGTGGAGCCCTTGCAATATGCTAATTTCACACGGACAGAGCTTTGTGATCAACAAAGTCGGTCAATCATGGATGATCCTCCAGTGTGCCACTGGAAAGCTCCAGCGTATTTTAAATTGTCTAGAAGTGTTGCAAAACCATGATGCTATTTGCCGTTCAGTTCTATATATCACCTCATAG

mRNA sequence

ATGCATGCTCCATTTCTCTACACTACGCCTATGTCCACTGGCCCTTTATTTCACATAATGTCGATTTCTTTTCTAATGTCAAATTCCATCATCACCAATGAATTGTGGAGCCCTTGCAATATGCTAATTTCACACGGACAGAGCTTTGTGATCAACAAAGTCGGTCAATCATGGATGATCCTCCAGTGTGCCACTGGAAAGCTCCAGCGTATTTTAAATTGTCTAGAAGTGTTGCAAAACCATGATGCTATTTGCCGTTCAGTTCTATATATCACCTCATAG

Coding sequence (CDS)

ATGCATGCTCCATTTCTCTACACTACGCCTATGTCCACTGGCCCTTTATTTCACATAATGTCGATTTCTTTTCTAATGTCAAATTCCATCATCACCAATGAATTGTGGAGCCCTTGCAATATGCTAATTTCACACGGACAGAGCTTTGTGATCAACAAAGTCGGTCAATCATGGATGATCCTCCAGTGTGCCACTGGAAAGCTCCAGCGTATTTTAAATTGTCTAGAAGTGTTGCAAAACCATGATGCTATTTGCCGTTCAGTTCTATATATCACCTCATAG

Protein sequence

MHAPFLYTTPMSTGPLFHIMSISFLMSNSIITNELWSPCNMLISHGQSFVINKVGQSWMILQCATGKLQRILNCLEVLQNHDAICRSVLYITS*
Homology
[Close]
BLAST of Csa6G127370 vs. TrEMBL
Match: A0A0A0KAH0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127370 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 5.8e-47
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MHAPFLYTTPMSTGPLFHIMSISFLMSNSIITNELWSPCNMLISHGQSFVINKVGQSWMI 60
          MHAPFLYTTPMSTGPLFHIMSISFLMSNSIITNELWSPCNMLISHGQSFVINKVGQSWMI
Sbjct: 1  MHAPFLYTTPMSTGPLFHIMSISFLMSNSIITNELWSPCNMLISHGQSFVINKVGQSWMI 60

Query: 61 LQCATGKLQRILNCLEVLQNHDAICRSVLYITS 94
          LQCATGKLQRILNCLEVLQNHDAICRSVLYITS
Sbjct: 61 LQCATGKLQRILNCLEVLQNHDAICRSVLYITS 93

[Close]
BLAST of Csa6G127370 vs. NCBI nr
Match: gi|700191521|gb|KGN46725.1| (hypothetical protein Csa_6G127370 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 8.3e-47
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MHAPFLYTTPMSTGPLFHIMSISFLMSNSIITNELWSPCNMLISHGQSFVINKVGQSWMI 60
          MHAPFLYTTPMSTGPLFHIMSISFLMSNSIITNELWSPCNMLISHGQSFVINKVGQSWMI
Sbjct: 1  MHAPFLYTTPMSTGPLFHIMSISFLMSNSIITNELWSPCNMLISHGQSFVINKVGQSWMI 60

Query: 61 LQCATGKLQRILNCLEVLQNHDAICRSVLYITS 94
          LQCATGKLQRILNCLEVLQNHDAICRSVLYITS
Sbjct: 61 LQCATGKLQRILNCLEVLQNHDAICRSVLYITS 93

The following BLAST results are available for this feature:
BLAST of Csa6G127370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAH0_CUCSA5.8e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127370 PE=4 SV=1[more]
BLAST of Csa6G127370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191521|gb|KGN46725.1|8.3e-47100.00hypothetical protein Csa_6G127370 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G127370.1Csa6G127370.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G127370Cucurbita pepo (Zucchini)cpecuB289
Csa6G127370Cucurbita pepo (Zucchini)cpecuB761
Csa6G127370Bottle gourd (USVL1VR-Ls)culsiB424
Csa6G127370Cucumber (Gy14) v2cgybcuB282
Csa6G127370Melon (DHL92) v3.6.1cumedB427
Csa6G127370Silver-seed gourdcarcuB0380
Csa6G127370Silver-seed gourdcarcuB0870
Csa6G127370Watermelon (97103) v2cuwmbB446
Csa6G127370Wax gourdcuwgoB600
Csa6G127370Cucumber (Gy14) v1cgycuB155
Csa6G127370Cucurbita maxima (Rimu)cmacuB568
Csa6G127370Cucurbita maxima (Rimu)cmacuB624
Csa6G127370Cucurbita moschata (Rifu)cmocuB559
Csa6G127370Cucurbita moschata (Rifu)cmocuB615
Csa6G127370Melon (DHL92) v3.5.1cumeB446
Csa6G127370Watermelon (97103) v1cuwmB530