Csa6G127360 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G127360
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 8838605 .. 8838835 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTGATTGGGGACGGTGGGTTACCAACTCGAAGGGTAAGGTATCATGAATGCGAAGTATCCATTGGTAGCGAGTTCGAGGATTTTGGGAGAGCCCTTATCAGTATTGTTACTGTAGATGAATTTATTGAAGATGACTCTTCCAGTAGGAAGACAAAGCCTGATGCATATGTCGAGCATCGAGGATCATCATCTTATGTTATTCCAGACGACAACAATCTCTTCTAA

mRNA sequence

ATGGCGTTGATTGGGGACGGTGGGTTACCAACTCGAAGGGTAAGGTATCATGAATGCGAAGTATCCATTGGTAGCGAGTTCGAGGATTTTGGGAGAGCCCTTATCAGTATTGTTACTGTAGATGAATTTATTGAAGATGACTCTTCCAGTAGGAAGACAAAGCCTGATGCATATGTCGAGCATCGAGGATCATCATCTTATGTTATTCCAGACGACAACAATCTCTTCTAA

Coding sequence (CDS)

ATGGCGTTGATTGGGGACGGTGGGTTACCAACTCGAAGGGTAAGGTATCATGAATGCGAAGTATCCATTGGTAGCGAGTTCGAGGATTTTGGGAGAGCCCTTATCAGTATTGTTACTGTAGATGAATTTATTGAAGATGACTCTTCCAGTAGGAAGACAAAGCCTGATGCATATGTCGAGCATCGAGGATCATCATCTTATGTTATTCCAGACGACAACAATCTCTTCTAA

Protein sequence

MALIGDGGLPTRRVRYHECEVSIGSEFEDFGRALISIVTVDEFIEDDSSSRKTKPDAYVEHRGSSSYVIPDDNNLF*

Homology

[Close]

BLAST of Csa6G127360 vs. TrEMBL
Match: A0A0A0KCZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127360 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.4e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 1  MALIGDGGLPTRRVRYHECEVSIGSEFEDFGRALISIVTVDEFIEDDSSSRKTKPDAYVE 60
          MALIGDGGLPTRRVRYHECEVSIGSEFEDFGRALISIVTVDEFIEDDSSSRKTKPDAYVE
Sbjct: 1  MALIGDGGLPTRRVRYHECEVSIGSEFEDFGRALISIVTVDEFIEDDSSSRKTKPDAYVE 60

Query: 61 HRGSSSYVIPDDNNLF 77
          HRGSSSYVIPDDNNLF
Sbjct: 61 HRGSSSYVIPDDNNLF 76

[Close]

BLAST of Csa6G127360 vs. TrEMBL
Match: A0A0A0L8S2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G597370 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.6e-10
Identity = 38/63 (60.32%), Postives = 42/63 (66.67%), Query Frame = 1


Query: 1  MALIGDGGLPTRRVRYHECEVSIGSEFEDFGRALISIVTVDEFIEDDSSSRKTKPDAYVE 60
          MA I D G  T  VR  ECEVS GS+FE+FGRAL S+V  DE  ED  SS +TK  AY E
Sbjct: 1  MASIKDSGSITGSVRCPECEVSSGSKFEEFGRALTSVVAADESTEDGCSSGQTKSGAYTE 60

Query: 61 HRG 64
          HRG
Sbjct: 61 HRG 63

[Close]

BLAST of Csa6G127360 vs. NCBI nr
Match: gi|700191520|gb|KGN46724.1| (hypothetical protein Csa_6G127360 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 2.0e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 1  MALIGDGGLPTRRVRYHECEVSIGSEFEDFGRALISIVTVDEFIEDDSSSRKTKPDAYVE 60
          MALIGDGGLPTRRVRYHECEVSIGSEFEDFGRALISIVTVDEFIEDDSSSRKTKPDAYVE
Sbjct: 1  MALIGDGGLPTRRVRYHECEVSIGSEFEDFGRALISIVTVDEFIEDDSSSRKTKPDAYVE 60

Query: 61 HRGSSSYVIPDDNNLF 77
          HRGSSSYVIPDDNNLF
Sbjct: 61 HRGSSSYVIPDDNNLF 76

[Close]

BLAST of Csa6G127360 vs. NCBI nr
Match: gi|700203105|gb|KGN58238.1| (hypothetical protein Csa_3G597370 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 6.6e-10
Identity = 38/63 (60.32%), Postives = 42/63 (66.67%), Query Frame = 1


Query: 1  MALIGDGGLPTRRVRYHECEVSIGSEFEDFGRALISIVTVDEFIEDDSSSRKTKPDAYVE 60
          MA I D G  T  VR  ECEVS GS+FE+FGRAL S+V  DE  ED  SS +TK  AY E
Sbjct: 1  MASIKDSGSITGSVRCPECEVSSGSKFEEFGRALTSVVAADESTEDGCSSGQTKSGAYTE 60

Query: 61 HRG 64
          HRG
Sbjct: 61 HRG 63

The following BLAST results are available for this feature:

BLAST of Csa6G127360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCZ9_CUCSA	1.4e-35	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127360 PE=4 SV=1	[more]
A0A0A0L8S2_CUCSA	4.6e-10	60.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G597370 PE=4 SV=1	[more]

BLAST of Csa6G127360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191520\|gb\|KGN46724.1\|	2.0e-35	100.00	hypothetical protein Csa_6G127360 [Cucumis sativus]	[more]
gi\|700203105\|gb\|KGN58238.1\|	6.6e-10	60.32	hypothetical protein Csa_3G597370 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G127360.1	Csa6G127360.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G127360	CSPI06G10300	Wild cucumber (PI 183967)	cpicuB314

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G127360	Cucumber (Gy14) v2	cgybcuB282
Csa6G127360	Melon (DHL92) v3.6.1	cumedB427
Csa6G127360	Silver-seed gourd	carcuB0380
Csa6G127360	Silver-seed gourd	carcuB0870
Csa6G127360	Watermelon (97103) v2	cuwmbB446
Csa6G127360	Wax gourd	cuwgoB600
Csa6G127360	Cucumber (Gy14) v1	cgycuB155
Csa6G127360	Cucurbita maxima (Rimu)	cmacuB568
Csa6G127360	Cucurbita maxima (Rimu)	cmacuB624
Csa6G127360	Cucurbita moschata (Rifu)	cmocuB559
Csa6G127360	Cucurbita moschata (Rifu)	cmocuB615
Csa6G127360	Melon (DHL92) v3.5.1	cumeB446
Csa6G127360	Watermelon (97103) v1	cuwmB530
Csa6G127360	Cucurbita pepo (Zucchini)	cpecuB289
Csa6G127360	Cucurbita pepo (Zucchini)	cpecuB761
Csa6G127360	Bottle gourd (USVL1VR-Ls)	culsiB424