Csa6G127310 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G127310
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 8775168 .. 8775745 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGAGTTGCCCAAAGGGTTGATTGAAAGATTGTCAAGAGAACCAGAGAAAAAGTTTGGAATAGAGCGGCTAAAAGCTTTAGCAGCCCAAGAATTCACAGAAAAGATTGAGCTAGAACAAGCGGAGAAATGGATAAGAACATTGGAAAAGAGTTTTAGAGTTGTGCAATGTGCAGAAGAGAGTAAAGTGGAATTCACAGTGCTCTTACAATGCAAGAAGGAGCAGAAGATAGGTGAGGAAGAGTGAGCAGAAAAAAGTTCAAGGAGATTTTCAATGGGAAGTATTTTTATAGGACTTACAAAGAAGAAAGGTGAGATGAATTTCTCCATTTGGGGCAAGGTGAGCTCTCGACCCCATAATATAAGAGGAAGTTCACCAAATTTGTGAAGTATGCATTGGTGATGGTGGCGATAGAAAGAAAAAGATGTAGATGTTTTGAGACTAGTTTAAGACCACAAATAAGAACTCTGGTTACAGCTTTAGCTATGCGGTGTGATTATGCAAAGTTGGTGGATGTAGCTCTACGAGCTGAGAGGAGTTTGGGAGGAAAAAGATCAAGTACTATGGTGAGTTGA

mRNA sequence

ATGATAGAGTTGCCCAAAGGGTTGATTGAAAGATTGTCAAGAGAACCAGAGAAAAAGTTTGGAATAGAGCGGCTAAAAGCTTTAGCAGCCCAAGAATTCACAGAAAAGATTGAGCTAGAACAAGCGGAGAAATGGATAAGAACATTGGAAAAGAGTTTTAGAGTTGTGCAATGTGCAGAAGAGAGTAAAGTGGAATTCACAGTGCTCTTACAATGCAAGAAGGAGCAGAAGATAGCTTTAGCTATGCGGTGTGATTATGCAAAGTTGGTGGATGTAGCTCTACGAGCTGAGAGGAGTTTGGGAGGAAAAAGATCAAGTACTATGGTGAGTTGA

Coding sequence (CDS)

ATGATAGAGTTGCCCAAAGGGTTGATTGAAAGATTGTCAAGAGAACCAGAGAAAAAGTTTGGAATAGAGCGGCTAAAAGCTTTAGCAGCCCAAGAATTCACAGAAAAGATTGAGCTAGAACAAGCGGAGAAATGGATAAGAACATTGGAAAAGAGTTTTAGAGTTGTGCAATGTGCAGAAGAGAGTAAAGTGGAATTCACAGTGCTCTTACAATGCAAGAAGGAGCAGAAGATAGCTTTAGCTATGCGGTGTGATTATGCAAAGTTGGTGGATGTAGCTCTACGAGCTGAGAGGAGTTTGGGAGGAAAAAGATCAAGTACTATGGTGAGTTGA

Protein sequence

MIELPKGLIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFTVLLQCKKEQKIALAMRCDYAKLVDVALRAERSLGGKRSSTMVS*

Homology

[Close]

BLAST of Csa6G127310 vs. TrEMBL
Match: A0A0A0KCZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127310 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.8e-52
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MIELPKGLIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAE 60
           MIELPKGLIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAE
Sbjct: 1   MIELPKGLIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAE 60

Query: 61  ESKVEFTVLLQCKKEQKIALAMRCDYAKLVDVALRAERSLGGKRSSTMVS 111
           ESKVEFTVLLQCKKEQKIALAMRCDYAKLVDVALRAERSLGGKRSSTMVS
Sbjct: 61  ESKVEFTVLLQCKKEQKIALAMRCDYAKLVDVALRAERSLGGKRSSTMVS 110

[Close]

BLAST of Csa6G127310 vs. TrEMBL
Match: A0A0A0LI31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-09
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 1


Query: 8   LIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFT 67
           LI  L+++ +K FGIER+KAL A EF      E+AEKWIRTLEK FRV+QC +E +V   
Sbjct: 32  LINALAQQLKKNFGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLA 91

Query: 68  VLLQCKKEQ 77
           V L  ++ +
Sbjct: 92  VFLLLERAE 100

[Close]

BLAST of Csa6G127310 vs. TrEMBL
Match: A0A0A0LVF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G165220 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-09
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1


Query: 17  EKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFTVLLQCKKEQ 76
           +KK+GIE++KA   +EF+  +ELEQA KW+R LEK FRV+QC EE K++    L  +K +
Sbjct: 54  KKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAE 113

[Close]

BLAST of Csa6G127310 vs. TrEMBL
Match: A0A0A0L7X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426910 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-07
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 1


Query: 8  LIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFR 55
          L++ ++ +PEKKFGIERLKAL A EFT   + E+ EKWIRTLEK FR
Sbjct: 28 LVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFR 74

[Close]

BLAST of Csa6G127310 vs. NCBI nr
Match: gi|700191515|gb|KGN46719.1| (hypothetical protein Csa_6G127310 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 2.7e-52
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MIELPKGLIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAE 60
           MIELPKGLIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAE
Sbjct: 1   MIELPKGLIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAE 60

Query: 61  ESKVEFTVLLQCKKEQKIALAMRCDYAKLVDVALRAERSLGGKRSSTMVS 111
           ESKVEFTVLLQCKKEQKIALAMRCDYAKLVDVALRAERSLGGKRSSTMVS
Sbjct: 61  ESKVEFTVLLQCKKEQKIALAMRCDYAKLVDVALRAERSLGGKRSSTMVS 110

[Close]

BLAST of Csa6G127310 vs. NCBI nr
Match: gi|700206416|gb|KGN61535.1| (hypothetical protein Csa_2G163160 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-09
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 1


Query: 8   LIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFT 67
           LI  L+++ +K FGIER+KAL A EF      E+AEKWIRTLEK FRV+QC +E +V   
Sbjct: 32  LINALAQQLKKNFGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLA 91

Query: 68  VLLQCKKEQ 77
           V L  ++ +
Sbjct: 92  VFLLLERAE 100

[Close]

BLAST of Csa6G127310 vs. NCBI nr
Match: gi|700209843|gb|KGN64939.1| (hypothetical protein Csa_1G165220 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 6.2e-09
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1


Query: 17  EKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFTVLLQCKKEQ 76
           +KK+GIE++KA   +EF+  +ELEQA KW+R LEK FRV+QC EE K++    L  +K +
Sbjct: 54  KKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAE 113

[Close]

BLAST of Csa6G127310 vs. NCBI nr
Match: gi|700202872|gb|KGN58005.1| (hypothetical protein Csa_3G426910 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-07
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 1


Query: 8  LIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFR 55
          L++ ++ +PEKKFGIERLKAL A EFT   + E+ EKWIRTLEK FR
Sbjct: 28 LVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFR 74

[Close]

BLAST of Csa6G127310 vs. NCBI nr
Match: gi|659072264|ref|XP_008464580.1| (PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 6.4e-06
Identity = 29/62 (46.77%), Postives = 35/62 (56.45%), Query Frame = 1


Query: 9   IERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFTV 68
           I     +PEKK+GIERLKAL A  F        AE W+  +EK FRV +C E+ KVE   
Sbjct: 76  IRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELAS 135

Query: 69  LL 71
            L
Sbjct: 136 FL 137

The following BLAST results are available for this feature:

BLAST of Csa6G127310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCZ4_CUCSA	1.8e-52	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G127310 PE=4 SV=1	[more]
A0A0A0LI31_CUCSA	2.5e-09	50.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1	[more]
A0A0A0LVF8_CUCSA	4.3e-09	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G165220 PE=4 SV=1	[more]
A0A0A0L7X2_CUCSA	1.8e-07	63.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426910 PE=4 SV=1	[more]

BLAST of Csa6G127310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191515\|gb\|KGN46719.1\|	2.7e-52	100.00	hypothetical protein Csa_6G127310 [Cucumis sativus]	[more]
gi\|700206416\|gb\|KGN61535.1\|	3.6e-09	50.72	hypothetical protein Csa_2G163160 [Cucumis sativus]	[more]
gi\|700209843\|gb\|KGN64939.1\|	6.2e-09	50.00	hypothetical protein Csa_1G165220 [Cucumis sativus]	[more]
gi\|700202872\|gb\|KGN58005.1\|	2.6e-07	63.83	hypothetical protein Csa_3G426910 [Cucumis sativus]	[more]
gi\|659072264\|ref\|XP_008464580.1\|	6.4e-06	46.77	PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G127310.1	Csa6G127310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 22..42 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G127310	Melon (DHL92) v3.6.1	cumedB427
Csa6G127310	Silver-seed gourd	carcuB0380
Csa6G127310	Silver-seed gourd	carcuB0870
Csa6G127310	Watermelon (97103) v2	cuwmbB446
Csa6G127310	Wax gourd	cuwgoB600
Csa6G127310	Cucumber (Gy14) v1	cgycuB155
Csa6G127310	Cucurbita maxima (Rimu)	cmacuB568
Csa6G127310	Cucurbita maxima (Rimu)	cmacuB624
Csa6G127310	Cucurbita moschata (Rifu)	cmocuB559
Csa6G127310	Cucurbita moschata (Rifu)	cmocuB615
Csa6G127310	Melon (DHL92) v3.5.1	cumeB446
Csa6G127310	Watermelon (Charleston Gray)	cuwcgB458
Csa6G127310	Watermelon (97103) v1	cuwmB530
Csa6G127310	Cucurbita pepo (Zucchini)	cpecuB289
Csa6G127310	Cucurbita pepo (Zucchini)	cpecuB761
Csa6G127310	Bottle gourd (USVL1VR-Ls)	culsiB423
Csa6G127310	Bottle gourd (USVL1VR-Ls)	culsiB424
Csa6G127310	Cucumber (Gy14) v2	cgybcuB282