Csa6G121440 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G121440
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	NAC domain protein
Location	Chr6 : 8386621 .. 8387092 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCACTGTGCTGGTACGGACAACCAAGTCTCCTTCATGCCAGAGCTTGATTCTCCAACCACTAATCTTTCACCACCCAACTATTCCTTGCAAGCAAGAGCTCCAATTGCACTTCCACCACCCGTTTTCCTCCAACTCCCTCACTTCCAAAGTCCAAAAATCCCCACATCTTTCGCCACCAACTTTATGCTCCGTTACACCTACAACCAGGGCATTGGGGTTACTCCACTTTACGGCGTCTAGCACACTGTGGATCACGTGACCGAGGAGAGTAGTGGAAAATTTTGTTGCTTCTCAACTTATCAATGATCAAGATTTGAAGCCATCCAGCTTTTCTCATGGAGCTACTTTTCAAGTGCCGCCCAACTCAGGCGGTGCTGCCACCGTGTCGGAGTGTGATCGTAAAGATACGGAGTTAGAGTTTGGGTTGGCATCCCCATCAAGTTGCCAAGGGGACATGTGGAAGTGA

mRNA sequence

ATGGCTCACTGTGCTGGTACGGACAACCAAGTCTCCTTCATGCCAGAGCTTGATTCTCCAACCACTAATCTTTCACCACCCAACTATTCCTTGCAAGCAAGAGCTCCAATTGCACTTCCACCACCCGTTTTCCTCCAACTCCCTCACTTCCAAAGTCCAAAAATCCCCACATCTTTCGCCACCAACTTTATGCTCCGTTACACCTACAACCAGGGCATTGGGGTTACTCCACTTTACGGCCCATCCAGCTTTTCTCATGGAGCTACTTTTCAAGTGCCGCCCAACTCAGGCGGTGCTGCCACCGTGTCGGAGTGTGATCGTAAAGATACGGAGTTAGAGTTTGGGTTGGCATCCCCATCAAGTTGCCAAGGGGACATGTGGAAGTGA

Coding sequence (CDS)

ATGGCTCACTGTGCTGGTACGGACAACCAAGTCTCCTTCATGCCAGAGCTTGATTCTCCAACCACTAATCTTTCACCACCCAACTATTCCTTGCAAGCAAGAGCTCCAATTGCACTTCCACCACCCGTTTTCCTCCAACTCCCTCACTTCCAAAGTCCAAAAATCCCCACATCTTTCGCCACCAACTTTATGCTCCGTTACACCTACAACCAGGGCATTGGGGTTACTCCACTTTACGGCCCATCCAGCTTTTCTCATGGAGCTACTTTTCAAGTGCCGCCCAACTCAGGCGGTGCTGCCACCGTGTCGGAGTGTGATCGTAAAGATACGGAGTTAGAGTTTGGGTTGGCATCCCCATCAAGTTGCCAAGGGGACATGTGGAAGTGA

Protein sequence

MAHCAGTDNQVSFMPELDSPTTNLSPPNYSLQARAPIALPPPVFLQLPHFQSPKIPTSFATNFMLRYTYNQGIGVTPLYGPSSFSHGATFQVPPNSGGAATVSECDRKDTELEFGLASPSSCQGDMWK*

Homology

[Close]

BLAST of Csa6G121440 vs. TrEMBL
Match: A0A0A0KG04_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G121440 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 5.1e-70
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MAHCAGTDNQVSFMPELDSPTTNLSPPNYSLQARAPIALPPPVFLQLPHFQSPKIPTSFA 60
           MAHCAGTDNQVSFMPELDSPTTNLSPPNYSLQARAPIALPPPVFLQLPHFQSPKIPTSFA
Sbjct: 1   MAHCAGTDNQVSFMPELDSPTTNLSPPNYSLQARAPIALPPPVFLQLPHFQSPKIPTSFA 60

Query: 61  TNFMLRYTYNQGIGVTPLYGPSSFSHGATFQVPPNSGGAATVSECDRKDTELEFGLASPS 120
           TNFMLRYTYNQGIGVTPLYGPSSFSHGATFQVPPNSGGAATVSECDRKDTELEFGLASPS
Sbjct: 61  TNFMLRYTYNQGIGVTPLYGPSSFSHGATFQVPPNSGGAATVSECDRKDTELEFGLASPS 120

Query: 121 SCQGDMWK 129
           SCQGDMWK
Sbjct: 121 SCQGDMWK 128

[Close]

BLAST of Csa6G121440 vs. TrEMBL
Match: A0A0A0KKJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G160180 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-32
Identity = 83/155 (53.55%), Postives = 93/155 (60.00%), Query Frame = 1


Query: 8   DNQVSFMPELDSPTTNL-SPPNYSLQARAPIALPPP----VFLQLPHFQSPKIPTSFATN 67
           D+QVSFMPELDSPTT +   P Y  +    +    P    VFLQLPH +SPKIPTS ATN
Sbjct: 175 DDQVSFMPELDSPTTQIFHHPAYPCKQELELHFHAPPHDQVFLQLPHLESPKIPTSSATN 234

Query: 68  FMLRYTYNQGIGVTPLYG-----------------------------PSSFSHGATFQVP 127
            +L Y Y++  GVTPLYG                              S++SHGA FQVP
Sbjct: 235 SLLPYAYDRDTGVTPLYGVEHTVDHVTDWRVMEKFVASQLSNDQDLKQSNYSHGAIFQVP 294

Query: 128 PNSGGAATVSECDRKDTELEFGLASPSSCQGDMWK 129
           PNSGGAATVSECDRKD   EF LASPSSCQ DMWK
Sbjct: 295 PNSGGAATVSECDRKDMAPEFALASPSSCQVDMWK 329

[Close]

BLAST of Csa6G121440 vs. NCBI nr
Match: gi|700191472|gb|KGN46676.1| (hypothetical protein Csa_6G121440 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 7.3e-70
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MAHCAGTDNQVSFMPELDSPTTNLSPPNYSLQARAPIALPPPVFLQLPHFQSPKIPTSFA 60
           MAHCAGTDNQVSFMPELDSPTTNLSPPNYSLQARAPIALPPPVFLQLPHFQSPKIPTSFA
Sbjct: 1   MAHCAGTDNQVSFMPELDSPTTNLSPPNYSLQARAPIALPPPVFLQLPHFQSPKIPTSFA 60

Query: 61  TNFMLRYTYNQGIGVTPLYGPSSFSHGATFQVPPNSGGAATVSECDRKDTELEFGLASPS 120
           TNFMLRYTYNQGIGVTPLYGPSSFSHGATFQVPPNSGGAATVSECDRKDTELEFGLASPS
Sbjct: 61  TNFMLRYTYNQGIGVTPLYGPSSFSHGATFQVPPNSGGAATVSECDRKDTELEFGLASPS 120

Query: 121 SCQGDMWK 129
           SCQGDMWK
Sbjct: 121 SCQGDMWK 128

[Close]

BLAST of Csa6G121440 vs. NCBI nr
Match: gi|449459760|ref|XP_004147614.1| (PREDICTED: NAC domain-containing protein 7 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 2.7e-32
Identity = 83/155 (53.55%), Postives = 93/155 (60.00%), Query Frame = 1


Query: 8   DNQVSFMPELDSPTTNL-SPPNYSLQARAPIALPPP----VFLQLPHFQSPKIPTSFATN 67
           D+QVSFMPELDSPTT +   P Y  +    +    P    VFLQLPH +SPKIPTS ATN
Sbjct: 175 DDQVSFMPELDSPTTQIFHHPAYPCKQELELHFHAPPHDQVFLQLPHLESPKIPTSSATN 234

Query: 68  FMLRYTYNQGIGVTPLYG-----------------------------PSSFSHGATFQVP 127
            +L Y Y++  GVTPLYG                              S++SHGA FQVP
Sbjct: 235 SLLPYAYDRDTGVTPLYGVEHTVDHVTDWRVMEKFVASQLSNDQDLKQSNYSHGAIFQVP 294

Query: 128 PNSGGAATVSECDRKDTELEFGLASPSSCQGDMWK 129
           PNSGGAATVSECDRKD   EF LASPSSCQ DMWK
Sbjct: 295 PNSGGAATVSECDRKDMAPEFALASPSSCQVDMWK 329

[Close]

BLAST of Csa6G121440 vs. NCBI nr
Match: gi|659073566|ref|XP_008437130.1| (PREDICTED: NAC domain-containing protein 7-like [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-30
Identity = 80/155 (51.61%), Postives = 90/155 (58.06%), Query Frame = 1


Query: 8   DNQVSFMPELDSPTTNL-SPPNYSLQARAPIALPPP----VFLQLPHFQSPKIPTSFATN 67
           D+QVSFMPELDSPTT +   P Y  +    +    P    VFLQLPH +SPKIPTS  TN
Sbjct: 175 DDQVSFMPELDSPTTQIFHHPAYPCKQELELHFHAPPHDQVFLQLPHLESPKIPTSSTTN 234

Query: 68  FMLRYTYNQGIGVTPLYGPS-----------------------------SFSHGATFQVP 127
            +L Y Y++  GVTPLYG                               ++SHGA FQVP
Sbjct: 235 SLLPYAYDRDTGVTPLYGVEHTVDHVTDWRVMEKFVASQLSNDQDLKQPNYSHGAIFQVP 294

Query: 128 PNSGGAATVSECDRKDTELEFGLASPSSCQGDMWK 129
           PNSGGAAT SECDRKD   EF LASPSSCQ DMWK
Sbjct: 295 PNSGGAATPSECDRKDMAPEFALASPSSCQVDMWK 329

The following BLAST results are available for this feature:

BLAST of Csa6G121440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG04_CUCSA	5.1e-70	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G121440 PE=4 SV=1	[more]
A0A0A0KKJ4_CUCSA	1.9e-32	53.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G160180 PE=4 SV=1	[more]

BLAST of Csa6G121440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191472\|gb\|KGN46676.1\|	7.3e-70	100.00	hypothetical protein Csa_6G121440 [Cucumis sativus]	[more]
gi\|449459760\|ref\|XP_004147614.1\|	2.7e-32	53.55	PREDICTED: NAC domain-containing protein 7 [Cucumis sativus]	[more]
gi\|659073566\|ref\|XP_008437130.1\|	1.5e-30	51.61	PREDICTED: NAC domain-containing protein 7-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G121440.1	Csa6G121440.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G121440	CSPI06G09850	Wild cucumber (PI 183967)	cpicuB314
Csa6G121440	CsGy6G009970	Cucumber (Gy14) v2	cgybcuB282

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G121440	Melon (DHL92) v3.5.1	cumeB425
Csa6G121440	Melon (DHL92) v3.5.1	cumeB451
Csa6G121440	Cucurbita pepo (Zucchini)	cpecuB288
Csa6G121440	Cucurbita pepo (Zucchini)	cpecuB749
Csa6G121440	Bottle gourd (USVL1VR-Ls)	culsiB409
Csa6G121440	Melon (DHL92) v3.6.1	cumedB405
Csa6G121440	Melon (DHL92) v3.6.1	cumedB431
Csa6G121440	Silver-seed gourd	carcuB0027
Csa6G121440	Silver-seed gourd	carcuB0369
Csa6G121440	Watermelon (97103) v2	cuwmbB431
Csa6G121440	Wax gourd	cuwgoB600
Csa6G121440	Wax gourd	cuwgoB618
Csa6G121440	Cucumber (Gy14) v1	cgycuB155
Csa6G121440	Cucurbita maxima (Rimu)	cmacuB636
Csa6G121440	Cucurbita moschata (Rifu)	cmocuB556
Csa6G121440	Cucurbita moschata (Rifu)	cmocuB626