Csa6G116670 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G116670
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 8004616 .. 8004931 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAACCGAGCCAAATCAACGGCCATCCTCAGATTTGCTCCATTTTACATGGGGTATGCAATACGGTTGGGTGGGAGGCATATTTATTGGCCATTTGGGACTTTATCCTCAACTGCCATCCCCTACTGCACACCACCTGTTCGATCAACGCAGCTTTTCTCTCTCAAAATTTCACTCTGACAGCTTTTGAAACAGTTTCTGGGTTTACATAATTCAGTTGAAAGCCTCTCTGTTGTACAAAATTCCTATTTCTGGGAGCTTCTGCTTCTGCTTCGGCTTCGGCTTTACTTTGTATTTCCCTTTTCAGTATAA

mRNA sequence

ATGGATAAACCGAGCCAAATCAACGGCCATCCTCAGATTTGCTCCATTTTACATGGGCTTTTGAAACAGTTTCTGGGTTTACATAATTCAGTTGAAAGCCTCTCTGTTGTACAAAATTCCTATTTCTGGGAGCTTCTGCTTCTGCTTCGGCTTCGGCTTTACTTTGTATTTCCCTTTTCAGTATAA

Coding sequence (CDS)

ATGGATAAACCGAGCCAAATCAACGGCCATCCTCAGATTTGCTCCATTTTACATGGGCTTTTGAAACAGTTTCTGGGTTTACATAATTCAGTTGAAAGCCTCTCTGTTGTACAAAATTCCTATTTCTGGGAGCTTCTGCTTCTGCTTCGGCTTCGGCTTTACTTTGTATTTCCCTTTTCAGTATAA

Protein sequence

MDKPSQINGHPQICSILHGLLKQFLGLHNSVESLSVVQNSYFWELLLLLRLRLYFVFPFSV*
Homology
[Close]
BLAST of Csa6G116670 vs. TrEMBL
Match: A0A0A0KCR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116670 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.5e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MDKPSQINGHPQICSILHGLLKQFLGLHNSVESLSVVQNSYFWELLLLLRLRLYFVFPFS 60
          MDKPSQINGHPQICSILHGLLKQFLGLHNSVESLSVVQNSYFWELLLLLRLRLYFVFPFS
Sbjct: 1  MDKPSQINGHPQICSILHGLLKQFLGLHNSVESLSVVQNSYFWELLLLLRLRLYFVFPFS 60

Query: 61 V 62
          V
Sbjct: 61 V 61

[Close]
BLAST of Csa6G116670 vs. NCBI nr
Match: gi|700191430|gb|KGN46634.1| (hypothetical protein Csa_6G116670 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MDKPSQINGHPQICSILHGLLKQFLGLHNSVESLSVVQNSYFWELLLLLRLRLYFVFPFS 60
          MDKPSQINGHPQICSILHGLLKQFLGLHNSVESLSVVQNSYFWELLLLLRLRLYFVFPFS
Sbjct: 1  MDKPSQINGHPQICSILHGLLKQFLGLHNSVESLSVVQNSYFWELLLLLRLRLYFVFPFS 60

Query: 61 V 62
          V
Sbjct: 61 V 61

The following BLAST results are available for this feature:
BLAST of Csa6G116670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCR8_CUCSA7.5e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116670 PE=4 SV=1[more]
BLAST of Csa6G116670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191430|gb|KGN46634.1|1.1e-26100.00hypothetical protein Csa_6G116670 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G116670.1Csa6G116670.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G116670Cucumber (Gy14) v1cgycuB110
Csa6G116670Cucumber (Gy14) v1cgycuB155
Csa6G116670Cucurbita maxima (Rimu)cmacuB141
Csa6G116670Cucurbita maxima (Rimu)cmacuB521
Csa6G116670Cucurbita maxima (Rimu)cmacuB555
Csa6G116670Cucurbita maxima (Rimu)cmacuB566
Csa6G116670Cucurbita maxima (Rimu)cmacuB635
Csa6G116670Cucurbita moschata (Rifu)cmocuB130
Csa6G116670Cucurbita moschata (Rifu)cmocuB513
Csa6G116670Cucurbita moschata (Rifu)cmocuB546
Csa6G116670Cucurbita moschata (Rifu)cmocuB557
Csa6G116670Cucurbita moschata (Rifu)cmocuB625
Csa6G116670Melon (DHL92) v3.5.1cumeB425
Csa6G116670Melon (DHL92) v3.5.1cumeB461
Csa6G116670Watermelon (Charleston Gray)cuwcgB441
Csa6G116670Watermelon (Charleston Gray)cuwcgB443
Csa6G116670Watermelon (Charleston Gray)cuwcgB457
Csa6G116670Watermelon (97103) v1cuwmB521
Csa6G116670Watermelon (97103) v1cuwmB443
Csa6G116670Watermelon (97103) v1cuwmB516
Csa6G116670Cucurbita pepo (Zucchini)cpecuB250
Csa6G116670Cucurbita pepo (Zucchini)cpecuB285
Csa6G116670Cucurbita pepo (Zucchini)cpecuB292
Csa6G116670Cucurbita pepo (Zucchini)cpecuB689
Csa6G116670Cucurbita pepo (Zucchini)cpecuB746
Csa6G116670Bottle gourd (USVL1VR-Ls)culsiB415
Csa6G116670Bottle gourd (USVL1VR-Ls)culsiB428
Csa6G116670Cucumber (Gy14) v2cgybcuB282
Csa6G116670Cucumber (Gy14) v2cgybcuB321
Csa6G116670Melon (DHL92) v3.6.1cumedB405
Csa6G116670Melon (DHL92) v3.6.1cumedB442
Csa6G116670Silver-seed gourdcarcuB0379
Csa6G116670Silver-seed gourdcarcuB0227
Csa6G116670Silver-seed gourdcarcuB0378
Csa6G116670Silver-seed gourdcarcuB0871
Csa6G116670Silver-seed gourdcarcuB1079
Csa6G116670Watermelon (97103) v2cuwmbB431
Csa6G116670Watermelon (97103) v2cuwmbB432
Csa6G116670Watermelon (97103) v2cuwmbB447
Csa6G116670Wax gourdcuwgoB561
Csa6G116670Wax gourdcuwgoB601
Csa6G116670Cucumber (Chinese Long) v2cucuB171