Csa6G113580 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G113580
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 7875577 .. 7876002 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTGCAAAGCCTATATTGAACAAGAAGGCTGTGTAGTTTTCCATTCGATGAAAATGAATAGTTCACAACCAGAAAAAGAAAATCTGTATGAGCAAGATTTGGGGAACGAGAAACCACAGCTAAGAAAGCGACGAAGAGAAACTTCATCGCAGAACCCATCGACCATAGATTTGTCAGTGCATTACAATGTAGCATCGAAGCCAAAAAAAGAAACTCCGACGTCCTCATTTGAAAAATCTAAAGACGAATATGAACTCATTAAATCACCAGTACTTCCATTCTCCATTTTAGGGCACACAAAAACATCTTTCCATTTTTTCTCCACCCTCTCCCATAGCTTTCCATTCTCTGAAAACACATTCATTTACATAAAATGTAAACTAGCAAAACCAACCATAGAAGAAAATAATGTTGTGATATGA

mRNA sequence

ATGGCCTGCAAAGCCTATATTGAACAAGAAGGCTGTGTAGTTTTCCATTCGATGAAAATGAATAGTTCACAACCAGAAAAAGAAAATCTGTATGAGCAAGATTTGGGGAACGAGAAACCACAGCTAAGAAAGCGACGAAGAGAAACTTCATCGCAGAACCCATCGACCATAGATTTGTCAGTGCATTACAATGTAGCATCGAAGCCAAAAAAAGAAACTCCGACGTCCTCATTTGAAAAATCTAAAGACGAATATGAACTCATTAAATCACCAGTACTTCCATTCTCCATTTTAGGGCACACAAAAACATCTTTCCATTTTTTCTCCACCCTCTCCCATAGCTTTCCATTCTCTGAAAACACATTCATTTACATAAAATGTAAACTAGCAAAACCAACCATAGAAGAAAATAATGTTGTGATATGA

Coding sequence (CDS)

ATGGCCTGCAAAGCCTATATTGAACAAGAAGGCTGTGTAGTTTTCCATTCGATGAAAATGAATAGTTCACAACCAGAAAAAGAAAATCTGTATGAGCAAGATTTGGGGAACGAGAAACCACAGCTAAGAAAGCGACGAAGAGAAACTTCATCGCAGAACCCATCGACCATAGATTTGTCAGTGCATTACAATGTAGCATCGAAGCCAAAAAAAGAAACTCCGACGTCCTCATTTGAAAAATCTAAAGACGAATATGAACTCATTAAATCACCAGTACTTCCATTCTCCATTTTAGGGCACACAAAAACATCTTTCCATTTTTTCTCCACCCTCTCCCATAGCTTTCCATTCTCTGAAAACACATTCATTTACATAAAATGTAAACTAGCAAAACCAACCATAGAAGAAAATAATGTTGTGATATGA

Protein sequence

MACKAYIEQEGCVVFHSMKMNSSQPEKENLYEQDLGNEKPQLRKRRRETSSQNPSTIDLSVHYNVASKPKKETPTSSFEKSKDEYELIKSPVLPFSILGHTKTSFHFFSTLSHSFPFSENTFIYIKCKLAKPTIEENNVVI*

Homology

[Close]

BLAST of Csa6G113580 vs. TrEMBL
Match: A0A0A0KFV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113580 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 4.4e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1


Query: 1   MACKAYIEQEGCVVFHSMKMNSSQPEKENLYEQDLGNEKPQLRKRRRETSSQNPSTIDLS 60
           MACKAYIEQEGCVVFHSMKMNSSQPEKENLYEQDLGNEKPQLRKRRRETSSQNPSTIDLS
Sbjct: 1   MACKAYIEQEGCVVFHSMKMNSSQPEKENLYEQDLGNEKPQLRKRRRETSSQNPSTIDLS 60

Query: 61  VHYNVASKPKKETPTSSFEKSKDEYELIKSPVLPFSILGHTKTSFHFFSTLSHSFPFSEN 120
           VHYNVASKPKKETPTSSFEKSKDEYELIKSPVLPFSILGHTKTSFHFFSTLSHSFPFSEN
Sbjct: 61  VHYNVASKPKKETPTSSFEKSKDEYELIKSPVLPFSILGHTKTSFHFFSTLSHSFPFSEN 120

Query: 121 TFIYIKCKLAKPTIEENNVVI 142
           TFIYIKCKLAKPTIEENNVVI
Sbjct: 121 TFIYIKCKLAKPTIEENNVVI 141

[Close]

BLAST of Csa6G113580 vs. TrEMBL
Match: A0A0A0L0H9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642540 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-29
Identity = 68/95 (71.58%), Postives = 77/95 (81.05%), Query Frame = 1


Query: 1   MACKAYIEQEGCVVFHSM-KMNSSQPEKENLYEQDLGNEKPQLRKRRRETSSQNPSTIDL 60
           MACKAYIEQ+GCVV HSM +MN SQPEKE   +QDLGNEK + RK  + T  +NP T D 
Sbjct: 115 MACKAYIEQKGCVVSHSMTQMNGSQPEKETPSDQDLGNEKQRPRKAAKGTPPRNPPTADF 174

Query: 61  SVHYNVASKPKKETPTSSFEKSKDEYELIKSPVLP 95
           SVHYNVASKP+KETP SSFEK KD+YEL+KSPVLP
Sbjct: 175 SVHYNVASKPEKETPASSFEKPKDKYELVKSPVLP 209

[Close]

BLAST of Csa6G113580 vs. TrEMBL
Match: A0A0A0L0H9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642540 PE=4 SV=1)

HSP 1 Score: 30.0 bits (66), Expect = 2.8e+03
Identity = 14/25 (56.00%), Postives = 17/25 (68.00%), Query Frame = 1


Query: 32  EQDLGNEKPQLRKRRRETSSQNPST 57
           EQD+ NEKPQ RK  + TS +N  T
Sbjct: 211 EQDVWNEKPQPRKAAKGTSRRNQRT 235

[Close]

BLAST of Csa6G113580 vs. NCBI nr
Match: gi|700191417|gb|KGN46621.1| (hypothetical protein Csa_6G113580 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 6.4e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1


Query: 1   MACKAYIEQEGCVVFHSMKMNSSQPEKENLYEQDLGNEKPQLRKRRRETSSQNPSTIDLS 60
           MACKAYIEQEGCVVFHSMKMNSSQPEKENLYEQDLGNEKPQLRKRRRETSSQNPSTIDLS
Sbjct: 1   MACKAYIEQEGCVVFHSMKMNSSQPEKENLYEQDLGNEKPQLRKRRRETSSQNPSTIDLS 60

Query: 61  VHYNVASKPKKETPTSSFEKSKDEYELIKSPVLPFSILGHTKTSFHFFSTLSHSFPFSEN 120
           VHYNVASKPKKETPTSSFEKSKDEYELIKSPVLPFSILGHTKTSFHFFSTLSHSFPFSEN
Sbjct: 61  VHYNVASKPKKETPTSSFEKSKDEYELIKSPVLPFSILGHTKTSFHFFSTLSHSFPFSEN 120

Query: 121 TFIYIKCKLAKPTIEENNVVI 142
           TFIYIKCKLAKPTIEENNVVI
Sbjct: 121 TFIYIKCKLAKPTIEENNVVI 141

[Close]

BLAST of Csa6G113580 vs. NCBI nr
Match: gi|778697838|ref|XP_004141405.2| (PREDICTED: uncharacterized protein LOC101209931 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 2.4e-29
Identity = 68/95 (71.58%), Postives = 77/95 (81.05%), Query Frame = 1


Query: 1   MACKAYIEQEGCVVFHSM-KMNSSQPEKENLYEQDLGNEKPQLRKRRRETSSQNPSTIDL 60
           MACKAYIEQ+GCVV HSM +MN SQPEKE   +QDLGNEK + RK  + T  +NP T D 
Sbjct: 115 MACKAYIEQKGCVVSHSMTQMNGSQPEKETPSDQDLGNEKQRPRKAAKGTPPRNPPTADF 174

Query: 61  SVHYNVASKPKKETPTSSFEKSKDEYELIKSPVLP 95
           SVHYNVASKP+KETP SSFEK KD+YEL+KSPVLP
Sbjct: 175 SVHYNVASKPEKETPASSFEKPKDKYELVKSPVLP 209

[Close]

BLAST of Csa6G113580 vs. NCBI nr
Match: gi|778697838|ref|XP_004141405.2| (PREDICTED: uncharacterized protein LOC101209931 [Cucumis sativus])

HSP 1 Score: 30.0 bits (66), Expect = 4.1e+03
Identity = 14/25 (56.00%), Postives = 17/25 (68.00%), Query Frame = 1


Query: 32  EQDLGNEKPQLRKRRRETSSQNPST 57
           EQD+ NEKPQ RK  + TS +N  T
Sbjct: 211 EQDVWNEKPQPRKAAKGTSRRNQRT 235

HSP 2 Score: 123.6 bits (309), Expect = 2.7e-25
Identity = 64/101 (63.37%), Postives = 75/101 (74.26%), Query Frame = 1


Query: 1   MACKAYIEQEGCVVF-HSMKMNSSQPEKENLYEQDLGNEKPQLRKRRRETSSQNPSTIDL 60
           MACKAY+E++G VV  H  ++N  QPEKE   EQ+LGNEKPQ RK  ++TS +NP T DL
Sbjct: 105 MACKAYMEEQGVVVSDHMAQVNDPQPEKETPSEQELGNEKPQPRKAAKDTSPRNPPTTDL 164

Query: 61  SVHYNVASK------PKKETPTSSFEKSKDEYELIKSPVLP 95
           SVHYNVASK      P+KETP SSFE  KDEYEL+ SPVLP
Sbjct: 165 SVHYNVASKPEKQTPPEKETPASSFENPKDEYELVTSPVLP 205

The following BLAST results are available for this feature:

BLAST of Csa6G113580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFV0_CUCSA	4.4e-75	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113580 PE=4 SV=1	[more]
A0A0A0L0H9_CUCSA	1.6e-29	71.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642540 PE=4 SV=1	[more]
A0A0A0L0H9_CUCSA	2.8e+03	56.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642540 PE=4 SV=1	[more]

BLAST of Csa6G113580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191417\|gb\|KGN46621.1\|	6.4e-75	100.00	hypothetical protein Csa_6G113580 [Cucumis sativus]	[more]
gi\|778697838\|ref\|XP_004141405.2\|	2.4e-29	71.58	PREDICTED: uncharacterized protein LOC101209931 [Cucumis sativus]	[more]
gi\|778697838\|ref\|XP_004141405.2\|	4.1e+03	56.00	PREDICTED: uncharacterized protein LOC101209931 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042967	acyl-carrier-protein biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008080	N-acetyltransferase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G113580.1	Csa6G113580.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G113580	CsGy6G009450	Cucumber (Gy14) v2	cgybcuB282

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G113580	Cucurbita maxima (Rimu)	cmacuB141
Csa6G113580	Cucurbita maxima (Rimu)	cmacuB521
Csa6G113580	Cucurbita maxima (Rimu)	cmacuB555
Csa6G113580	Cucurbita maxima (Rimu)	cmacuB566
Csa6G113580	Cucurbita moschata (Rifu)	cmocuB130
Csa6G113580	Cucurbita moschata (Rifu)	cmocuB513
Csa6G113580	Cucurbita moschata (Rifu)	cmocuB546
Csa6G113580	Cucurbita moschata (Rifu)	cmocuB557
Csa6G113580	Melon (DHL92) v3.5.1	cumeB425
Csa6G113580	Melon (DHL92) v3.5.1	cumeB461
Csa6G113580	Watermelon (Charleston Gray)	cuwcgB443
Csa6G113580	Watermelon (Charleston Gray)	cuwcgB457
Csa6G113580	Watermelon (97103) v1	cuwmB516
Csa6G113580	Cucurbita pepo (Zucchini)	cpecuB250
Csa6G113580	Cucurbita pepo (Zucchini)	cpecuB285
Csa6G113580	Cucurbita pepo (Zucchini)	cpecuB292
Csa6G113580	Cucurbita pepo (Zucchini)	cpecuB689
Csa6G113580	Bottle gourd (USVL1VR-Ls)	culsiB415
Csa6G113580	Bottle gourd (USVL1VR-Ls)	culsiB428
Csa6G113580	Cucumber (Gy14) v2	cgybcuB148
Csa6G113580	Cucumber (Gy14) v2	cgybcuB321
Csa6G113580	Melon (DHL92) v3.6.1	cumedB405
Csa6G113580	Melon (DHL92) v3.6.1	cumedB442
Csa6G113580	Silver-seed gourd	carcuB0379
Csa6G113580	Silver-seed gourd	carcuB0227
Csa6G113580	Silver-seed gourd	carcuB0378
Csa6G113580	Silver-seed gourd	carcuB1079
Csa6G113580	Watermelon (97103) v2	cuwmbB432
Csa6G113580	Watermelon (97103) v2	cuwmbB447
Csa6G113580	Wax gourd	cuwgoB561
Csa6G113580	Wax gourd	cuwgoB608
Csa6G113580	Cucumber (Chinese Long) v2	cucuB126
Csa6G113580	Cucumber (Chinese Long) v2	cucuB171
Csa6G113580	Cucumber (Gy14) v1	cgycuB110
Csa6G113580	Cucumber (Gy14) v1	cgycuB155