Csa6G111920 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G111920
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 7665739 .. 7666038 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTCTTCAATAGCTTTCACCTCGAGCATCTCGATTTTTCACGCCATTCTAAATCTCTTGAAACCCACACCAATAAGAAAACTAGCGGAGCCACAAACAATCCACCCTTCCACACCAGAAACATTACACCAAGATGCATATGCATTCATCTTCCAACCATCCTCTGGCGGCTTCTAAGTATTGAGACTAAACTCCTTCTTAGGCACCAAATCAAGGGAGCTCCAGATGATAACAAAGGATTCTTGGATAGTTATATCAATGAATTTGCATGCAAGCTCAAAAATCGACAAAACTAA

mRNA sequence

ATGGTTTTCTTCAATAGCTTTCACCTCGAGCATCTCGATTTTTCACGCCATTCTAAATCTCTTGAAACCCACACCAATAAGAAAACTAGCGGAGCCACAAACAATCCACCCTTCCACACCAGAAACATTACACCAAGATGCATATGCATTCATCTTCCAACCATCCTCTGGCGGCTTCTAAGTATTGAGACTAAACTCCTTCTTAGGCACCAAATCAAGGGAGCTCCAGATGATAACAAAGGATTCTTGGATAGTTATATCAATGAATTTGCATGCAAGCTCAAAAATCGACAAAACTAA

Coding sequence (CDS)

ATGGTTTTCTTCAATAGCTTTCACCTCGAGCATCTCGATTTTTCACGCCATTCTAAATCTCTTGAAACCCACACCAATAAGAAAACTAGCGGAGCCACAAACAATCCACCCTTCCACACCAGAAACATTACACCAAGATGCATATGCATTCATCTTCCAACCATCCTCTGGCGGCTTCTAAGTATTGAGACTAAACTCCTTCTTAGGCACCAAATCAAGGGAGCTCCAGATGATAACAAAGGATTCTTGGATAGTTATATCAATGAATTTGCATGCAAGCTCAAAAATCGACAAAACTAA

Protein sequence

MVFFNSFHLEHLDFSRHSKSLETHTNKKTSGATNNPPFHTRNITPRCICIHLPTILWRLLSIETKLLLRHQIKGAPDDNKGFLDSYINEFACKLKNRQN*

Homology

[Close]

BLAST of Csa6G111920 vs. TrEMBL
Match: A0A0A0KDY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G111920 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 2.8e-52
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1


Query: 1   MVFFNSFHLEHLDFSRHSKSLETHTNKKTSGATNNPPFHTRNITPRCICIHLPTILWRLL 60
           MVFFNSFHLEHLDFSRHSKSLETHTNKKTSGATNNPPFHTRNITPRCICIHLPTILWRLL
Sbjct: 1   MVFFNSFHLEHLDFSRHSKSLETHTNKKTSGATNNPPFHTRNITPRCICIHLPTILWRLL 60

Query: 61  SIETKLLLRHQIKGAPDDNKGFLDSYINEFACKLKNRQN 100
           SIETKLLLRHQIKGAPDDNKGFLDSYINEFACKLKNRQN
Sbjct: 61  SIETKLLLRHQIKGAPDDNKGFLDSYINEFACKLKNRQN 99

[Close]

BLAST of Csa6G111920 vs. TrEMBL
Match: A0A0A0LW98_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560850 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-19
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 1


Query: 7   FHLEHLDFSRHSKSLETHTNKKTSGATNNPP--FHTRNITPRCICIHLPTILWRLLSIET 66
           FHL+HLDF  +SKS ETHTN++T G TN+P     TR+IT R I IHLPTIL R+ S+ET
Sbjct: 28  FHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNFSQTRSITSRRISIHLPTILRRIPSVET 87

Query: 67  KLLLRHQIKGAPDDNKGFLDS 86
           K LLR QIKGA DD+KG LDS
Sbjct: 88  KPLLRRQIKGARDDSKGLLDS 108

[Close]

BLAST of Csa6G111920 vs. NCBI nr
Match: gi|700191398|gb|KGN46602.1| (hypothetical protein Csa_6G111920 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 4.1e-52
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1


Query: 1   MVFFNSFHLEHLDFSRHSKSLETHTNKKTSGATNNPPFHTRNITPRCICIHLPTILWRLL 60
           MVFFNSFHLEHLDFSRHSKSLETHTNKKTSGATNNPPFHTRNITPRCICIHLPTILWRLL
Sbjct: 1   MVFFNSFHLEHLDFSRHSKSLETHTNKKTSGATNNPPFHTRNITPRCICIHLPTILWRLL 60

Query: 61  SIETKLLLRHQIKGAPDDNKGFLDSYINEFACKLKNRQN 100
           SIETKLLLRHQIKGAPDDNKGFLDSYINEFACKLKNRQN
Sbjct: 61  SIETKLLLRHQIKGAPDDNKGFLDSYINEFACKLKNRQN 99

[Close]

BLAST of Csa6G111920 vs. NCBI nr
Match: gi|700210907|gb|KGN66003.1| (hypothetical protein Csa_1G560850 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 3.5e-19
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 1


Query: 7   FHLEHLDFSRHSKSLETHTNKKTSGATNNPP--FHTRNITPRCICIHLPTILWRLLSIET 66
           FHL+HLDF  +SKS ETHTN++T G TN+P     TR+IT R I IHLPTIL R+ S+ET
Sbjct: 28  FHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNFSQTRSITSRRISIHLPTILRRIPSVET 87

Query: 67  KLLLRHQIKGAPDDNKGFLDS 86
           K LLR QIKGA DD+KG LDS
Sbjct: 88  KPLLRRQIKGARDDSKGLLDS 108

The following BLAST results are available for this feature:

BLAST of Csa6G111920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDY3_CUCSA	2.8e-52	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G111920 PE=4 SV=1	[more]
A0A0A0LW98_CUCSA	2.4e-19	65.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560850 PE=4 SV=1	[more]

BLAST of Csa6G111920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191398\|gb\|KGN46602.1\|	4.1e-52	100.00	hypothetical protein Csa_6G111920 [Cucumis sativus]	[more]
gi\|700210907\|gb\|KGN66003.1\|	3.5e-19	65.43	hypothetical protein Csa_1G560850 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G111920.1	Csa6G111920.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G111920	Cucurbita maxima (Rimu)	cmacuB521
Csa6G111920	Cucurbita maxima (Rimu)	cmacuB555
Csa6G111920	Cucurbita maxima (Rimu)	cmacuB618
Csa6G111920	Cucurbita moschata (Rifu)	cmocuB130
Csa6G111920	Cucurbita moschata (Rifu)	cmocuB513
Csa6G111920	Cucurbita moschata (Rifu)	cmocuB546
Csa6G111920	Cucurbita moschata (Rifu)	cmocuB611
Csa6G111920	Melon (DHL92) v3.5.1	cumeB425
Csa6G111920	Melon (DHL92) v3.5.1	cumeB448
Csa6G111920	Melon (DHL92) v3.5.1	cumeB461
Csa6G111920	Watermelon (Charleston Gray)	cuwcgB443
Csa6G111920	Watermelon (Charleston Gray)	cuwcgB453
Csa6G111920	Watermelon (97103) v1	cuwmB516
Csa6G111920	Cucurbita pepo (Zucchini)	cpecuB292
Csa6G111920	Cucurbita pepo (Zucchini)	cpecuB689
Csa6G111920	Cucurbita pepo (Zucchini)	cpecuB754
Csa6G111920	Bottle gourd (USVL1VR-Ls)	culsiB415
Csa6G111920	Bottle gourd (USVL1VR-Ls)	culsiB428
Csa6G111920	Cucumber (Gy14) v2	cgybcuB148
Csa6G111920	Cucumber (Gy14) v2	cgybcuB282
Csa6G111920	Cucumber (Gy14) v2	cgybcuB321
Csa6G111920	Melon (DHL92) v3.6.1	cumedB405
Csa6G111920	Melon (DHL92) v3.6.1	cumedB442
Csa6G111920	Silver-seed gourd	carcuB0227
Csa6G111920	Silver-seed gourd	carcuB0378
Csa6G111920	Silver-seed gourd	carcuB0823
Csa6G111920	Silver-seed gourd	carcuB1079
Csa6G111920	Watermelon (97103) v2	cuwmbB432
Csa6G111920	Watermelon (97103) v2	cuwmbB443
Csa6G111920	Wax gourd	cuwgoB561
Csa6G111920	Wax gourd	cuwgoB608
Csa6G111920	Cucumber (Chinese Long) v2	cucuB126
Csa6G111920	Cucumber (Chinese Long) v2	cucuB171
Csa6G111920	Cucumber (Gy14) v1	cgycuB110
Csa6G111920	Cucumber (Gy14) v1	cgycuB155
Csa6G111920	Cucurbita maxima (Rimu)	cmacuB141