Csa6G107860 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G107860
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 7112752 .. 7112967 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGTCGGAGGTGATGTTTGAGTTAGTTGTTTAAGTTTCTGTCAGAGTTGGTCATTGGAAGGGTCCTTGGTGTTGGCCACTGGATGGTGTGTTCGTCAAATATGTGGTGCAAATGGTTGGTTACCAAAGTTTTTGTACAAAGCCGATGATCTTAGAGATTTTTCTCACTGGAGGCCAGTGTCACTAGATATTAGAGGTGGTAATCTGAGTTAG

mRNA sequence

ATGATCGTCGGAGGTGATAGTTGGTCATTGGAAGGGTCCTTGGTGTTGGCCACTGGATGGTGTGTTCGTCAAATATGTGGTGCAAATGGTTGGTTACCAAAGTTTTTGTACAAAGCCGATGATCTTAGAGATTTTTCTCACTGGAGGCCAGTGTCACTAGATATTAGAGGTGGTAATCTGAGTTAG

Coding sequence (CDS)

ATGATCGTCGGAGGTGATAGTTGGTCATTGGAAGGGTCCTTGGTGTTGGCCACTGGATGGTGTGTTCGTCAAATATGTGGTGCAAATGGTTGGTTACCAAAGTTTTTGTACAAAGCCGATGATCTTAGAGATTTTTCTCACTGGAGGCCAGTGTCACTAGATATTAGAGGTGGTAATCTGAGTTAG

Protein sequence

MIVGGDSWSLEGSLVLATGWCVRQICGANGWLPKFLYKADDLRDFSHWRPVSLDIRGGNLS*
Homology
[Close]
BLAST of Csa6G107860 vs. TrEMBL
Match: A0A0A0KFN4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107860 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.7e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MIVGGDSWSLEGSLVLATGWCVRQICGANGWLPKFLYKADDLRDFSHWRPVSLDIRGGNL 60
          MIVGGDSWSLEGSLVLATGWCVRQICGANGWLPKFLYKADDLRDFSHWRPVSLDIRGGNL
Sbjct: 1  MIVGGDSWSLEGSLVLATGWCVRQICGANGWLPKFLYKADDLRDFSHWRPVSLDIRGGNL 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]
BLAST of Csa6G107860 vs. NCBI nr
Match: gi|700191332|gb|KGN46536.1| (hypothetical protein Csa_6G107860 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 3.9e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MIVGGDSWSLEGSLVLATGWCVRQICGANGWLPKFLYKADDLRDFSHWRPVSLDIRGGNL 60
          MIVGGDSWSLEGSLVLATGWCVRQICGANGWLPKFLYKADDLRDFSHWRPVSLDIRGGNL
Sbjct: 1  MIVGGDSWSLEGSLVLATGWCVRQICGANGWLPKFLYKADDLRDFSHWRPVSLDIRGGNL 60

Query: 61 S 62
          S
Sbjct: 61 S 61

The following BLAST results are available for this feature:
BLAST of Csa6G107860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFN4_CUCSA2.7e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107860 PE=4 SV=1[more]
BLAST of Csa6G107860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191332|gb|KGN46536.1|3.9e-29100.00hypothetical protein Csa_6G107860 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G107860.1Csa6G107860.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G107860CSPI06G08510Wild cucumber (PI 183967)cpicuB314
Csa6G107860CsGy6G008600Cucumber (Gy14) v2cgybcuB282
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G107860Silver-seed gourdcarcuB0093
Csa6G107860Silver-seed gourdcarcuB0915
Csa6G107860Watermelon (97103) v2cuwmbB468
Csa6G107860Wax gourdcuwgoB536
Csa6G107860Wax gourdcuwgoB545
Csa6G107860Cucumber (Gy14) v1cgycuB155
Csa6G107860Cucurbita maxima (Rimu)cmacuB379
Csa6G107860Cucurbita maxima (Rimu)cmacuB911
Csa6G107860Cucurbita moschata (Rifu)cmocuB369
Csa6G107860Cucurbita moschata (Rifu)cmocuB897
Csa6G107860Melon (DHL92) v3.5.1cumeB444
Csa6G107860Watermelon (Charleston Gray)cuwcgB476
Csa6G107860Watermelon (97103) v1cuwmB544
Csa6G107860Cucurbita pepo (Zucchini)cpecuB152
Csa6G107860Cucurbita pepo (Zucchini)cpecuB331
Csa6G107860Bottle gourd (USVL1VR-Ls)culsiB398
Csa6G107860Bottle gourd (USVL1VR-Ls)culsiB402
Csa6G107860Melon (DHL92) v3.6.1cumedB425