Csa6G107850 (gene) Cucumber (Chinese Long) v2

NameCsa6G107850
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 7098867 .. 7099797 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGCTCTGGATGATGGAATTTCCCTTATCCTTACAATTGAACCACTGGTGAATATGAAATGCACAACAAAAATGTTCTCCATGATATTACCCTCAACACCCGATCGCTCCTTTACAGCTTCCTTTCAAATGGACCCAAAATTCTTCACTCAATTTACTTGCAATTATTATCACTATGCAATTATTCCCCTCGGTGACTTATACCTTCTCATGTTGGATATGCAACGCCGTGGCTTCTTTGCCCTAACCCTTAATCTTTCTGAACATTTCAATGATCGCCGTGTAGTTGCTGCTCTTGAATTTCATACTTATGGTTAGTTTGATTTGATGTATCATTTCTTGTTGTTTCTTTCTCTTCAAGAATCAATAATAATAAATACTAATCTTGTTTCTTGGATTTTTCTTGCAACTTTGTTATAGGTGACGAGGAGAAACTTTCATTGGCAATGTTGCCTAATTTTATGTCCAAGAATGAGGAGGATGTAGGGGAAATTGATTATACTTACTTTGTCTCGATTGAAATTGAAGATTTCAGAAATTTGGTGAAAGAGTTCAAAAACGAGGATGAAGGTAAGATGTATAATAGTTATATAATGAATCGATGTGTGATAAAGGTACTAAAGTTCGTTGAGATATATATAGCTAGGAATTTTGTTCAAAGAAAATTTAAAAAACTCTTTTTTCTTTTCCTCTTCATTTTTTTTTTTAAACAAAGACTAGTCATTTAATTTCGAAAGCATTTTTGTGTTTGATTGTATCATCTTTTTTGTGACAGTTCGTGTTGTTCTAACGAATTCATATGTCAAGTTATCGTTTGGAAGGAAAGTCATTATTCTTACTACAATGGTATGTTTTCTTTTTCTTTTTTTTTTTATATTGTTTGATTATTATTCATATAGTTTATTTTGTAAACATATTACAGGTTTAA

mRNA sequence

ATGAAAGCTCTGGATGATGGAATTTCCCTTATCCTTACAATTGAACCACTGGTGAATATGAAATGCACAACAAAAATGTTCTCCATGATATTACCCTCAACACCCGATCGCTCCTTTACAGCTTCCTTTCAAATGGACCCAAAATTCTTCACTCAATTTACTTGCAATTATTATCACTATGCAATTATTCCCCTCGGTGACTTATACCTTCTCATGTTGGATATGCAACGCCGTGGCTTCTTTGCCCTAACCCTTAATCTTTCTGAACATTTCAATGATCGCCGTGTAGTTGCTGCTCTTGAATTTCATACTTATGGTGACGAGGAGAAACTTTCATTGGCAATGTTGCCTAATTTTATGTCCAAGAATGAGGAGGATGTAGGGGAAATTGATTATACTTACTTTGTCTCGATTGAAATTGAAGATTTCAGAAATTTGGTGAAAGAGTTCAAAAACGAGGATGAAGTTCGTGTTGTTCTAACGAATTCATATGTCAAGTTATCGTTTGGAAGGAAAGTCATTATTCTTACTACAATGGTTTAA

Coding sequence (CDS)

ATGAAAGCTCTGGATGATGGAATTTCCCTTATCCTTACAATTGAACCACTGGTGAATATGAAATGCACAACAAAAATGTTCTCCATGATATTACCCTCAACACCCGATCGCTCCTTTACAGCTTCCTTTCAAATGGACCCAAAATTCTTCACTCAATTTACTTGCAATTATTATCACTATGCAATTATTCCCCTCGGTGACTTATACCTTCTCATGTTGGATATGCAACGCCGTGGCTTCTTTGCCCTAACCCTTAATCTTTCTGAACATTTCAATGATCGCCGTGTAGTTGCTGCTCTTGAATTTCATACTTATGGTGACGAGGAGAAACTTTCATTGGCAATGTTGCCTAATTTTATGTCCAAGAATGAGGAGGATGTAGGGGAAATTGATTATACTTACTTTGTCTCGATTGAAATTGAAGATTTCAGAAATTTGGTGAAAGAGTTCAAAAACGAGGATGAAGTTCGTGTTGTTCTAACGAATTCATATGTCAAGTTATCGTTTGGAAGGAAAGTCATTATTCTTACTACAATGGTTTAA

Protein sequence

MKALDDGISLILTIEPLVNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTCNYYHYAIIPLGDLYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLSLAMLPNFMSKNEEDVGEIDYTYFVSIEIEDFRNLVKEFKNEDEVRVVLTNSYVKLSFGRKVIILTTMV*
BLAST of Csa6G107850 vs. TrEMBL
Match: A0A0A0KA10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107850 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 9.0e-97
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1

Query: 1   MKALDDGISLILTIEPLVNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTCNYYHY 60
           MKALDDGISLILTIEPLVNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTCNYYHY
Sbjct: 1   MKALDDGISLILTIEPLVNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTCNYYHY 60

Query: 61  AIIPLGDLYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLSLAMLPNFM 120
           AIIPLGDLYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLSLAMLPNFM
Sbjct: 61  AIIPLGDLYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLSLAMLPNFM 120

Query: 121 SKNEEDVGEIDYTYFVSIEIEDFRNLVKEFKNEDEVRVVLTNSYVKLSFGRKVIILTTMV 180
           SKNEEDVGEIDYTYFVSIEIEDFRNLVKEFKNEDEVRVVLTNSYVKLSFGRKVIILTTMV
Sbjct: 121 SKNEEDVGEIDYTYFVSIEIEDFRNLVKEFKNEDEVRVVLTNSYVKLSFGRKVIILTTMV 180

BLAST of Csa6G107850 vs. TrEMBL
Match: A0A0A0K7E0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002300 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.5e-06
Identity = 50/163 (30.67%), Postives = 82/163 (50.31%), Query Frame = 1

Query: 6   DGISLILTIEPLVNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTCNYYHYAIIPL 65
           D I ++       N++C+  MFS+I+P   +     +FQM P+FF  F  N  H + IP+
Sbjct: 12  DAIYILSRFGENANIECSPSMFSLIVPHH-NLELNVAFQMMPQFFNYFFSNRTHSSKIPI 71

Query: 66  GDLYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLSLAMLPNFMSKNEE 125
             L+  +  M+     +L+  + +   DR V   L+F +  +E  L L          +E
Sbjct: 72  QPLFNTIKRMKEYQITSLSFFVLKLL-DRLV---LKFSSPRNE--LPLIRKFRMRCAVKE 131

Query: 126 DVGEIDYTYFVSIEIEDFRNLVKEFKNEDEVRVVLTNSYVKLS 169
           D+G ID   FVSI+ + FR +V   + +  VRV  T+S+V+ S
Sbjct: 132 DMGNIDLETFVSIDSQQFRRVVTGCR-DYFVRVTTTHSHVRFS 166

BLAST of Csa6G107850 vs. NCBI nr
Match: gi|700191331|gb|KGN46535.1| (hypothetical protein Csa_6G107850 [Cucumis sativus])

HSP 1 Score: 360.9 bits (925), Expect = 1.3e-96
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1

Query: 1   MKALDDGISLILTIEPLVNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTCNYYHY 60
           MKALDDGISLILTIEPLVNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTCNYYHY
Sbjct: 1   MKALDDGISLILTIEPLVNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTCNYYHY 60

Query: 61  AIIPLGDLYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLSLAMLPNFM 120
           AIIPLGDLYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLSLAMLPNFM
Sbjct: 61  AIIPLGDLYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLSLAMLPNFM 120

Query: 121 SKNEEDVGEIDYTYFVSIEIEDFRNLVKEFKNEDEVRVVLTNSYVKLSFGRKVIILTTMV 180
           SKNEEDVGEIDYTYFVSIEIEDFRNLVKEFKNEDEVRVVLTNSYVKLSFGRKVIILTTMV
Sbjct: 121 SKNEEDVGEIDYTYFVSIEIEDFRNLVKEFKNEDEVRVVLTNSYVKLSFGRKVIILTTMV 180

BLAST of Csa6G107850 vs. NCBI nr
Match: gi|659117581|ref|XP_008458677.1| (PREDICTED: uncharacterized protein LOC103498005 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 63/162 (38.89%), Postives = 81/162 (50.00%), Query Frame = 1

Query: 19  NMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTC-NYYHYAIIPLGDLYLLMLDMQR 78
           ++KC+ KMFS+I+ S        S Q+ P FFT F C N      IP+   Y +M  M  
Sbjct: 26  DLKCSPKMFSLII-SRHFPLIITSLQILPPFFTNFLCQNQIFQFQIPIKSFYDIMNSMTH 85

Query: 79  RGFFALTLNLSEHFNDRRVVAALEFHT---YGDEEKLSLAMLPNFMSKNEEDVGEIDYTY 138
           R + ++TL+L  H     +  AL+F       D+E L  A         EEDVGEIDY  
Sbjct: 86  RLYSSMTLSL--HPQQPLIQIALQFRNPRVVDDQEALYHAF--PLSPSREEDVGEIDYGI 145

Query: 139 FVSIEIEDFRNLVKEFKNEDEVRVVLTNSYVKLSFGRKVIIL 177
           F SIE   FR +  E  + D + V LTNS VK S   K IIL
Sbjct: 146 FFSIESLVFRFIAIELDDFDAL-VTLTNSEVKFSVNDKDIIL 181

BLAST of Csa6G107850 vs. NCBI nr
Match: gi|659131739|ref|XP_008465831.1| (PREDICTED: uncharacterized protein LOC103503425 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 3.2e-07
Identity = 50/179 (27.93%), Postives = 83/179 (46.37%), Query Frame = 1

Query: 6   DGISLILTIEPL-------VNMKCTTKMFSMILPSTPDRSFTASFQMDPKFFTQFTCNYY 65
           D  +L+L   P+       V++K T K  +++L     R F A+ QM  +FF  F C+  
Sbjct: 7   DEFALLLKSTPVLCQVGLTVDIKSTPKTLTLMLTHHSPR-FVAALQMSNEFFNLFYCDET 66

Query: 66  HYAIIPLGDLYLLMLDMQRRGFFALTLNLSEHFNDRRVVAALEFHTYGDEEKLSLAMLPN 125
            +    L   Y+LM  M+ + +  +   L    +   V    E +  G + +++   L  
Sbjct: 67  LHLRFSLEKFYVLMYQMELQAYSLMHFTLLPELH--AVFLTFEDYNSGQKPRITTRQLDM 126

Query: 126 FMSKNEEDVGEIDYTYFVSIEIEDFRNLVKEFKNEDEVRVVLTNSYVKLSFGRKVIILT 178
              K ++ +  IDY  FVSI+ +DF+ +V E      V V+L++S  K S   K II T
Sbjct: 127 LPYKVDQQL-RIDYKAFVSIDSKDFKRVVLEISAHSSVYVILSDSEAKFSNENKEIIFT 181

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KA10_CUCSA9.0e-97100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107850 PE=4 SV=1[more]
A0A0A0K7E0_CUCSA9.5e-0630.67Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002300 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700191331|gb|KGN46535.1|1.3e-96100.00hypothetical protein Csa_6G107850 [Cucumis sativus][more]
gi|659117581|ref|XP_008458677.1|1.4e-1038.89PREDICTED: uncharacterized protein LOC103498005 [Cucumis melo][more]
gi|659131739|ref|XP_008465831.1|3.2e-0727.93PREDICTED: uncharacterized protein LOC103503425 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G107850.1Csa6G107850.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G107850Cla006698Watermelon (97103) v1cuwmB544
Csa6G107850ClCG06G002720Watermelon (Charleston Gray)cuwcgB476
Csa6G107850Lsi09G016460Bottle gourd (USVL1VR-Ls)culsiB398
Csa6G107850Cla97C06G112080Watermelon (97103) v2cuwmbB468
The following gene(s) are paralogous to this gene:

None