Csa6G106720 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G106720
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionMajor pollen allergen Ole e 6; contains IPR015333 (Pollen allergen ole e 6)
LocationChr6 : 6997108 .. 6997913 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCTCTCTCAGAATTTTCATCCTCTCTAAGAATTAATAATCAATAAGACACCAAAGGCCAAAAATTTTCAAGAGGAAAAAGATGGCCAAGAAAATGATGGCAGTCTTTTTGATGTGCATCGTGGTGGTAGCTACTTTGCAATTTGTCATGGCCAATGAGGAGGATGGAGTGACCAAATATGAGGCCAAATTTGATGCCAAATACAAGTCTTGCTATGAAACTTGTGAGAAGGAATGCCTTAGAAATGACACTAACGGTGAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTAGCGAAAAGGAAGCTGCTGGTACGTATTACCATCTTTATAATAAGCGTTCTCTGTAATTTTTGCATGAATTATGTTAATTTATGATCATAGAAAAAAAACCATGTATCAAAATTTTTCATTAGACCACCAAAAAAGAACCACATATAACAAAAATATAAACTAAAATTGTGAATCTAAATACTTGTACGCATTTTTTATTCTTAAATTTTTGGATAAAGTATTATTTATTATATTAATTTTGATTGTTGTTTTTTGTTTTTTTACAGATAAATTGCACATCGAATTGCACTGAATGATGGAGAGCAAAAAGAAAAAACACCTCTTGAGAAGGATCAAGTACTAAAATTGTATTGAAATCGAGCTTGTACTTTGATTTTAATATTGAAATTTATAAAATTTTTGGTTTTTGGTGACATTGATATGTGAATCAACCATTGAAACTAATTAACATATATGGGGATCGACACATTCTATAAATCTTATATACAATGAGAAGATACTACAGGGCGC

mRNA sequence

ATGGCCAAGAAAATGATGGCAGTCTTTTTGATGTGCATCGTGGTGGTAGCTACTTTGCAATTTGTCATGGCCAATGAGGAGGATGGAGTGACCAAATATGAGGCCAAATTTGATGCCAAATACAAGTCTTGCTATGAAACTTGTGAGAAGGAATGCCTTAGAAATGACACTAACGGTGAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTAGCGAAAAGGAAGCTGCTGATAAATTGCACATCGAATTGCACTGA

Coding sequence (CDS)

ATGGCCAAGAAAATGATGGCAGTCTTTTTGATGTGCATCGTGGTGGTAGCTACTTTGCAATTTGTCATGGCCAATGAGGAGGATGGAGTGACCAAATATGAGGCCAAATTTGATGCCAAATACAAGTCTTGCTATGAAACTTGTGAGAAGGAATGCCTTAGAAATGACACTAACGGTGAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTAGCGAAAAGGAAGCTGCTGATAAATTGCACATCGAATTGCACTGA

Protein sequence

MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGESFCEVKCDEDCSEKEAADKLHIELH*
Homology
[Close]
BLAST of Csa6G106720 vs. Swiss-Prot
Match: ALL6_OLEEU (Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-07
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1 

Query: 38 DAKYKSCYETCEKECLRNDTNGESFCEVKCDEDCSEKEAADKL 81
          +A++K CY+TC KEC  +  NG +FCE+KCD DCS K+  +KL
Sbjct: 2  EAQFKECYDTCHKEC-SDKGNGFTFCEMKCDTDCSVKDVKEKL 43

[Close]
BLAST of Csa6G106720 vs. TrEMBL
Match: A0A0A0K9Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.3e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60
          MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCSEKEAADKLHIELH 86
          SFCEVKCDEDCSEKEAADKLHIELH
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIELH 85

[Close]
BLAST of Csa6G106720 vs. TrEMBL
Match: A0A0A0KPA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.6e-30
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 1 

Query: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60
          MA KM+A+FLMCIVVVA LQF  AN+ED V KYEAKFDAKYKSC+ETCEKECLR  + G+
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKED-VAKYEAKFDAKYKSCFETCEKECLRYGS-GQ 60

Query: 61 SFCEVKCDEDCSEKEAADKLHIELH 86
          S+CEVKCDEDC EKEAADKLHIELH
Sbjct: 61 SYCEVKCDEDCDEKEAADKLHIELH 83

[Close]
BLAST of Csa6G106720 vs. TrEMBL
Match: A0A0A0KFH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.2e-28
Identity = 57/85 (67.06%), Postives = 71/85 (83.53%), Query Frame = 1 

Query: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60
          MAKKMM V L+CIV++A L+F + N E+   KYE+KFDA+YKSCYE+CEKECL N  NG+
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60

Query: 61 SFCEVKCDEDCSEKEAADKLHIELH 86
          S+CEVKCDEDC EKE ADKLH+E++
Sbjct: 61 SYCEVKCDEDCDEKEVADKLHVEVN 85

[Close]
BLAST of Csa6G106720 vs. TrEMBL
Match: A0A0A0KCI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.6e-27
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 1 

Query: 3  KKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGESF 62
          KKMM V L+CIVV+A L+F + N E+   KYE+KFDAKYK+CYE+CEKECL N  NG+SF
Sbjct: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63

Query: 63 CEVKCDEDCSEKEAADKLHI 83
          CEVKCDEDC EKE+ADKLHI
Sbjct: 64 CEVKCDEDCGEKESADKLHI 83

[Close]
BLAST of Csa6G106720 vs. TrEMBL
Match: A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.3e-26
Identity = 60/82 (73.17%), Postives = 67/82 (81.71%), Query Frame = 1 

Query: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60
          MAKKMMAVFLMCIVVV +LQF  AN+E  V  YEAKFDAKYK+C+ TCEKEC+    +G 
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERG-SGH 60

Query: 61 SFCEVKCDEDCSEKEAADKLHI 83
          S+CEVKCDEDC  KEAADKLHI
Sbjct: 61 SYCEVKCDEDCGAKEAADKLHI 81

[Close]
BLAST of Csa6G106720 vs. NCBI nr
Match: gi|700191316|gb|KGN46520.1| (hypothetical protein Csa_6G106720 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 1.9e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60
          MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCSEKEAADKLHIELH 86
          SFCEVKCDEDCSEKEAADKLHIELH
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIELH 85

[Close]
BLAST of Csa6G106720 vs. NCBI nr
Match: gi|659114221|ref|XP_008456958.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 143.7 bits (361), Expect = 1.5e-31
Identity = 67/85 (78.82%), Postives = 76/85 (89.41%), Query Frame = 1 

Query: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60
          MAKKM+A+FLMCIVVVA LQF  AN+ED V KYEAKFDAKYKSC++TCEKECL N  +G+
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENG-SGQ 60

Query: 61 SFCEVKCDEDCSEKEAADKLHIELH 86
          S+CEVKCDEDC+EKE ADKLHIELH
Sbjct: 61 SYCEVKCDEDCNEKEVADKLHIELH 84

[Close]
BLAST of Csa6G106720 vs. NCBI nr
Match: gi|449457470|ref|XP_004146471.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 3.8e-30
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 1 

Query: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60
          MA KM+A+FLMCIVVVA LQF  AN+ED V KYEAKFDAKYKSC+ETCEKECLR  + G+
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKED-VAKYEAKFDAKYKSCFETCEKECLRYGS-GQ 60

Query: 61 SFCEVKCDEDCSEKEAADKLHIELH 86
          S+CEVKCDEDC EKEAADKLHIELH
Sbjct: 61 SYCEVKCDEDCDEKEAADKLHIELH 83

[Close]
BLAST of Csa6G106720 vs. NCBI nr
Match: gi|700191282|gb|KGN46486.1| (hypothetical protein Csa_6G102480 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 6.0e-28
Identity = 57/85 (67.06%), Postives = 71/85 (83.53%), Query Frame = 1 

Query: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60
          MAKKMM V L+CIV++A L+F + N E+   KYE+KFDA+YKSCYE+CEKECL N  NG+
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60

Query: 61 SFCEVKCDEDCSEKEAADKLHIELH 86
          S+CEVKCDEDC EKE ADKLH+E++
Sbjct: 61 SYCEVKCDEDCDEKEVADKLHVEVN 85

[Close]
BLAST of Csa6G106720 vs. NCBI nr
Match: gi|659119712|ref|XP_008459802.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 3.9e-27
Identity = 63/85 (74.12%), Postives = 68/85 (80.00%), Query Frame = 1 

Query: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60
          MAKKMMAVFLMCIVVVATLQF  AN+ED V  YEAKFDAKYK+C+  CEKEC+     G 
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFATANKEDEVANYEAKFDAKYKACFVICEKECVERG-GGH 60

Query: 61 SFCEVKCDEDCSEKEAADKLHIELH 86
          S+CEVKCDEDC  KEAADKL I LH
Sbjct: 61 SYCEVKCDEDCGAKEAADKLGIILH 84

The following BLAST results are available for this feature:
BLAST of Csa6G106720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ALL6_OLEEU1.5e-0753.49Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1[more]
BLAST of Csa6G106720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9Z9_CUCSA1.3e-42100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1[more]
A0A0A0KPA7_CUCSA2.6e-3080.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1[more]
A0A0A0KFH6_CUCSA4.2e-2867.06Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1[more]
A0A0A0KCI6_CUCSA3.6e-2771.25Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1[more]
A0A0A0KDP7_CUCSA2.3e-2673.17Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1[more]
BLAST of Csa6G106720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191316|gb|KGN46520.1|1.9e-42100.00hypothetical protein Csa_6G106720 [Cucumis sativus][more]
gi|659114221|ref|XP_008456958.1|1.5e-3178.82PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo][more]
gi|449457470|ref|XP_004146471.1|3.8e-3080.00PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus][more]
gi|700191282|gb|KGN46486.1|6.0e-2867.06hypothetical protein Csa_6G102480 [Cucumis sativus][more]
gi|659119712|ref|XP_008459802.1|3.9e-2774.12PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015333Pollen_allergen_ole-e-6
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU099958cucumber EST collection version 3.0transcribed_cluster
CU100615cucumber EST collection version 3.0transcribed_cluster
CU108186cucumber EST collection version 3.0transcribed_cluster
CU139854cucumber EST collection version 3.0transcribed_cluster
CU151634cucumber EST collection version 3.0transcribed_cluster
CU171075cucumber EST collection version 3.0transcribed_cluster
CU173693cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G106720.1Csa6G106720.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU171075CU171075transcribed_cluster
CU108186CU108186transcribed_cluster
CU151634CU151634transcribed_cluster
CU173693CU173693transcribed_cluster
CU139854CU139854transcribed_cluster
CU099958CU099958transcribed_cluster
CU100615CU100615transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015333Pollen allergen ole e 6GENE3DG3DSA:1.10.287.720coord: 39..82
score: 4.6
IPR015333Pollen allergen ole e 6PFAMPF09253Ole-e-6coord: 44..81
score: 4.9
IPR015333Pollen allergen ole e 6unknownSSF111388Pollen allergen ole e 6coord: 38..80
score: 8.76
NoneNo IPR availablePANTHERPTHR35632FAMILY NOT NAMEDcoord: 1..82
score: 1.6
NoneNo IPR availablePANTHERPTHR35632:SF1SUBFAMILY NOT NAMEDcoord: 1..82
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G106720Cucumber (Gy14) v1cgycuB155
Csa6G106720Cucurbita maxima (Rimu)cmacuB911
Csa6G106720Cucurbita moschata (Rifu)cmocuB897
Csa6G106720Watermelon (Charleston Gray)cuwcgB476
Csa6G106720Watermelon (97103) v1cuwmB544
Csa6G106720Cucurbita pepo (Zucchini)cpecuB152
Csa6G106720Cucurbita pepo (Zucchini)cpecuB331
Csa6G106720Bottle gourd (USVL1VR-Ls)culsiB402
Csa6G106720Cucumber (Gy14) v2cgybcuB282
Csa6G106720Silver-seed gourdcarcuB0093
Csa6G106720Watermelon (97103) v2cuwmbB468
Csa6G106720Wax gourdcuwgoB536