Csa6G105150 (gene) Cucumber (Chinese Long) v2

NameCsa6G105150
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionMyb-like transcription factor; contains IPR009057 (Homeodomain-like)
LocationChr6 : 6908538 .. 6908833 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCAAACACAATCTCATTTACCAACAAAATATTTGAAGATGGATTTCAAGAAACTCAGTGTTCTGTGAAGGGAGAAACCAGCAATATAATAATGGAGGAAAGAAGATCACAATCACATGAAGTTTTAAGGAAAGGGCCATGGAAACTCGAAGAAGATGAAGTACTTTTGAACCATGTTAACCGTTTCGGTCCCAGAGACTGGAGCTCCATTCGATCCAAAGGCCTTCTTCAGCGGACTGGCAAGTCCTGCCGTCTTCGTTGGGTTAATAAACTCAGACCCAACTTGAAAAAGTAA

mRNA sequence

ATGGAGGAAAGAAGATCACAATCACATGAAGTTTTAAGGAAAGGGCCATGGAAACTCGAAGAAGATGAAGTACTTTTGAACCATGTTAACCGTTTCGGTCCCAGAGACTGGAGCTCCATTCGATCCAAAGGCCTTCTTCAGCGGACTGGCAAGTCCTGCCGTCTTCGTTGGGTTAATAAACTCAGACCCAACTTGAAAAAGTAA

Coding sequence (CDS)

ATGGAGGAAAGAAGATCACAATCACATGAAGTTTTAAGGAAAGGGCCATGGAAACTCGAAGAAGATGAAGTACTTTTGAACCATGTTAACCGTTTCGGTCCCAGAGACTGGAGCTCCATTCGATCCAAAGGCCTTCTTCAGCGGACTGGCAAGTCCTGCCGTCTTCGTTGGGTTAATAAACTCAGACCCAACTTGAAAAAGTAA

Protein sequence

MEERRSQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKK*
BLAST of Csa6G105150 vs. Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.6e-13
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 1

Query: 1  MEERRSQSHEV-LRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVN 60
          M+++   SH+V +RKGPW +EED +L+N ++  G   W++I     L+RTGKSCRLRW+N
Sbjct: 1  MDKKPCNSHDVEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLN 60

Query: 61 KLRPNLKK 68
           LRP++++
Sbjct: 61 YLRPDVRR 68

BLAST of Csa6G105150 vs. Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-12
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = 1

Query: 12 LRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKK 68
          LRKG W  EEDE LLN++ R G   WSS+     LQR GKSCRLRW+N LRP+LK+
Sbjct: 12 LRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKR 67

BLAST of Csa6G105150 vs. Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.7e-12
Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 1

Query: 1  MEERRSQSHEV-LRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVN 60
          M+++   S +V +RKGPW +EED +L+N++   G   W+S+     L+RTGKSCRLRW+N
Sbjct: 1  MDKKPCNSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLN 60

Query: 61 KLRPNLKK 68
           LRP++++
Sbjct: 61 YLRPDVRR 68

BLAST of Csa6G105150 vs. Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.2e-12
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1

Query: 6  SQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNL 65
          S +   +RKGPW +EED +L+N++   G   W+S+     L+RTGKSCRLRW+N LRP++
Sbjct: 14 SSAEAEVRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDV 73

Query: 66 KK 68
          ++
Sbjct: 74 RR 75

BLAST of Csa6G105150 vs. Swiss-Prot
Match: MYB24_ARATH (Transcription factor MYB24 OS=Arabidopsis thaliana GN=MYB24 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-11
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1

Query: 12 LRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKK 68
          +RKGPW +EED +L+N++   G   W+S+     L+RTGKSCRLRW+N LRP++++
Sbjct: 17 VRKGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRR 72

BLAST of Csa6G105150 vs. TrEMBL
Match: A0A0A0K9Z0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G105150 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1

Query: 1  MEERRSQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNK 60
          MEERRSQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNK
Sbjct: 1  MEERRSQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNK 60

Query: 61 LRPNLKK 68
          LRPNLKK
Sbjct: 61 LRPNLKK 67

BLAST of Csa6G105150 vs. TrEMBL
Match: A0A151RAV2_CAJCA (Transcription factor GAMYB OS=Cajanus cajan GN=KK1_038912 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.2e-24
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 1

Query: 1  MEERRSQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNK 60
          M  ++ Q  E +RKGPWK EEDEVLLNHV ++GPRDWSSIRSKGLLQRTGKSCRLRWVNK
Sbjct: 1  MHGKKEQEEEYIRKGPWKAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNK 60

Query: 61 LRPNLK 67
          LRPNLK
Sbjct: 61 LRPNLK 66

BLAST of Csa6G105150 vs. TrEMBL
Match: A0A087GZE9_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G260400 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 6.5e-24
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 1

Query: 1  MEERRSQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNK 60
          M++  S   E ++KGPWK EEDEVLLNHVNR+GPRDWSSIRSKGLL RTGKSCRLRWVNK
Sbjct: 1  MKKTESTKKEEIKKGPWKAEEDEVLLNHVNRYGPRDWSSIRSKGLLHRTGKSCRLRWVNK 60

Query: 61 LRPNLK 67
          LRPNLK
Sbjct: 61 LRPNLK 66

BLAST of Csa6G105150 vs. TrEMBL
Match: A0A0D3CUY6_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=DUO1 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-23
Identity = 51/58 (87.93%), Postives = 56/58 (96.55%), Query Frame = 1

Query: 10 EVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKK 68
          E ++KGPWK EEDEVL+NHVNR+GPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK+
Sbjct: 7  EEIKKGPWKAEEDEVLINHVNRYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKR 64

BLAST of Csa6G105150 vs. TrEMBL
Match: A0A078BUD3_BRANA (BnaA07g18670D protein OS=Brassica napus GN=BnaA07g18670D PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-23
Identity = 51/58 (87.93%), Postives = 56/58 (96.55%), Query Frame = 1

Query: 10 EVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKK 68
          E ++KGPWK EEDEVL+NHVNR+GPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK+
Sbjct: 7  EEMKKGPWKAEEDEVLINHVNRYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKR 64

BLAST of Csa6G105150 vs. TAIR10
Match: AT3G60460.1 (AT3G60460.1 myb-like HTH transcriptional regulator family protein)

HSP 1 Score: 113.2 bits (282), Expect = 6.2e-26
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 1

Query: 10 EVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK 67
          E ++KGPWK EEDEVL+NHV R+GPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK
Sbjct: 6  EEIKKGPWKAEEDEVLINHVKRYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK 62

BLAST of Csa6G105150 vs. TAIR10
Match: AT4G26930.1 (AT4G26930.1 myb domain protein 97)

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-14
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 1

Query: 11 VLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKK 68
          VL+KGPW + EDE L  +V  +G  +W+S++ K  L R GKSCRLRW N LRPNL+K
Sbjct: 18 VLKKGPWTVAEDETLAAYVREYGEGNWNSVQKKTWLARCGKSCRLRWANHLRPNLRK 74

BLAST of Csa6G105150 vs. TAIR10
Match: AT3G48920.1 (AT3G48920.1 myb domain protein 45)

HSP 1 Score: 73.6 bits (179), Expect = 5.4e-14
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 1

Query: 4  RRSQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 63
          R  +S E  RKG W  EEDE L +HV ++G   WS+I  +  LQR GKSCRLRWVN LRP
Sbjct: 10 REMKSKEKQRKGLWSPEEDEKLRSHVLKYGHGCWSTIPLQAGLQRNGKSCRLRWVNYLRP 69

Query: 64 NLKK 68
           LKK
Sbjct: 70 GLKK 73

BLAST of Csa6G105150 vs. TAIR10
Match: AT5G06100.2 (AT5G06100.2 myb domain protein 33)

HSP 1 Score: 73.6 bits (179), Expect = 5.4e-14
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 1

Query: 12 LRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKK 68
          L+KGPW   ED++L+++VN+ G  +W++++    L R GKSCRLRW N LRPNLKK
Sbjct: 32 LKKGPWSSAEDDILIDYVNKHGEGNWNAVQKHTSLFRCGKSCRLRWANHLRPNLKK 87

BLAST of Csa6G105150 vs. TAIR10
Match: AT5G26660.1 (AT5G26660.1 myb domain protein 86)

HSP 1 Score: 72.8 bits (177), Expect = 9.3e-14
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = 1

Query: 12 LRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKK 68
          LRKG W  EEDE LLN++ R G   WSS+     LQR GKSCRLRW+N LRP+LK+
Sbjct: 12 LRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKR 67

BLAST of Csa6G105150 vs. NCBI nr
Match: gi|700191306|gb|KGN46510.1| (hypothetical protein Csa_6G105150 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1

Query: 1  MEERRSQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNK 60
          MEERRSQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNK
Sbjct: 1  MEERRSQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNK 60

Query: 61 LRPNLKK 68
          LRPNLKK
Sbjct: 61 LRPNLKK 67

BLAST of Csa6G105150 vs. NCBI nr
Match: gi|449445734|ref|XP_004140627.1| (PREDICTED: myb-related protein Myb4-like [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 6.0e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1

Query: 1  MEERRSQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNK 60
          MEERRSQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNK
Sbjct: 1  MEERRSQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNK 60

Query: 61 LRPNLK 67
          LRPNLK
Sbjct: 61 LRPNLK 66

BLAST of Csa6G105150 vs. NCBI nr
Match: gi|659119692|ref|XP_008459792.1| (PREDICTED: myb-related protein 308-like [Cucumis melo])

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-30
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 1

Query: 1  MEERRSQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNK 60
          ME+RRSQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNK
Sbjct: 1  MEDRRSQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNK 60

Query: 61 LRPNLK 67
          LRPNLK
Sbjct: 61 LRPNLK 66

BLAST of Csa6G105150 vs. NCBI nr
Match: gi|1012328109|gb|KYP39774.1| (Transcription factor GAMYB [Cajanus cajan])

HSP 1 Score: 119.0 bits (297), Expect = 3.2e-24
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 1

Query: 1  MEERRSQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNK 60
          M  ++ Q  E +RKGPWK EEDEVLLNHV ++GPRDWSSIRSKGLLQRTGKSCRLRWVNK
Sbjct: 1  MHGKKEQEEEYIRKGPWKAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNK 60

Query: 61 LRPNLK 67
          LRPNLK
Sbjct: 61 LRPNLK 66

BLAST of Csa6G105150 vs. NCBI nr
Match: gi|702354868|ref|XP_010058514.1| (PREDICTED: transcription factor MYB82 [Eucalyptus grandis])

HSP 1 Score: 118.6 bits (296), Expect = 4.2e-24
Identity = 52/66 (78.79%), Postives = 60/66 (90.91%), Query Frame = 1

Query: 1  MEERRSQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNK 60
          ME +R +  +VLRKGPWK EED+VL++HV ++GPRDWSSIRSKGLLQRTGKSCRLRWVNK
Sbjct: 7  MEGKREEQQQVLRKGPWKAEEDDVLISHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNK 66

Query: 61 LRPNLK 67
          LRPNLK
Sbjct: 67 LRPNLK 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MYB40_ANTMA5.6e-1347.06Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1[more]
MYB86_ARATH1.6e-1260.71Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1[more]
MYB05_ANTMA3.7e-1245.59Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1[more]
MYB21_ARATH6.2e-1246.77Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1[more]
MYB24_ARATH1.1e-1150.00Transcription factor MYB24 OS=Arabidopsis thaliana GN=MYB24 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K9Z0_CUCSA1.1e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G105150 PE=4 SV=1[more]
A0A151RAV2_CAJCA2.2e-2480.30Transcription factor GAMYB OS=Cajanus cajan GN=KK1_038912 PE=4 SV=1[more]
A0A087GZE9_ARAAL6.5e-2480.30Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G260400 PE=4 SV=1[more]
A0A0D3CUY6_BRAOL1.4e-2387.93Uncharacterized protein OS=Brassica oleracea var. oleracea GN=DUO1 PE=4 SV=1[more]
A0A078BUD3_BRANA1.4e-2387.93BnaA07g18670D protein OS=Brassica napus GN=BnaA07g18670D PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G60460.16.2e-2687.72 myb-like HTH transcriptional regulator family protein[more]
AT4G26930.11.9e-1456.14 myb domain protein 97[more]
AT3G48920.15.4e-1457.81 myb domain protein 45[more]
AT5G06100.25.4e-1453.57 myb domain protein 33[more]
AT5G26660.19.3e-1460.71 myb domain protein 86[more]
Match NameE-valueIdentityDescription
gi|700191306|gb|KGN46510.1|1.6e-31100.00hypothetical protein Csa_6G105150 [Cucumis sativus][more]
gi|449445734|ref|XP_004140627.1|6.0e-31100.00PREDICTED: myb-related protein Myb4-like [Cucumis sativus][more]
gi|659119692|ref|XP_008459792.1|1.3e-3098.48PREDICTED: myb-related protein 308-like [Cucumis melo][more]
gi|1012328109|gb|KYP39774.1|3.2e-2480.30Transcription factor GAMYB [Cajanus cajan][more]
gi|702354868|ref|XP_010058514.1|4.2e-2478.79PREDICTED: transcription factor MYB82 [Eucalyptus grandis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like_sf
IPR017930Myb_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048235 pollen sperm cell differentiation
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G105150.1Csa6G105150.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 14..59
score: 7.4
IPR001005SANT/Myb domainSMARTSM00717santcoord: 13..63
score: 4.
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 9..67
score: 1.0
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 11..67
score: 6.28
IPR017930Myb domainPROFILEPS51294HTH_MYBcoord: 9..65
score: 18
NoneNo IPR availablePANTHERPTHR10641MYB-LIKE DNA-BINDING PROTEIN MYBcoord: 1..66
score: 3.4
NoneNo IPR availablePANTHERPTHR10641:SF488DUO POLLEN 1coord: 1..66
score: 3.4