Csa6G101460 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G101460
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 6730149 .. 6730581 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTACACTTGACTTTATCATTATTTTGACTTGAACTTTATGATGGATCACACCAAGCTTGAAAATGGAGAAGCATATCGGTTGCAACACATGAAAGATAAAGATGATGATTTTCTCGGCTGCGACACATGGGAGAAGATGAACATGAATTCTCTCTACTACAGTGGGAGAAAATGAAGATGAATCCCCTCAGTCGTAACACATTGAAAATGAGGCAGAGGCAGAGCTTTAGCATTATAGGCATCTTCTTAGAGAGGTAGAAGTGGTGCTACACTATCGTCATCATCTCTTGCAAAGGCAGAGCTGCACTATCGTCTTCCTCTTGAAGCTGCACCATTGTCATCCTTTTGGAGAGGTGGAGTTGCAGCATTGATGAAAGTTTTCAAGCTTGAATATAAAGGAGGTGTCAAATTAAGACTTCGAGCTTGA

mRNA sequence

ATGAAAAGAGGTAGAAGTGGTGCTACACTATCGTCATCATCTCTTGCAAAGGCAGAGCTGCACTATCGTCTTCCTCTTGAAGCTGCACCATTGTCATCCTTTTGGAGAGGTGGAGTTGCAGCATTGATGAAAGTTTTCAAGCTTGAATATAAAGGAGGTGTCAAATTAAGACTTCGAGCTTGA

Coding sequence (CDS)

ATGAAAAGAGGTAGAAGTGGTGCTACACTATCGTCATCATCTCTTGCAAAGGCAGAGCTGCACTATCGTCTTCCTCTTGAAGCTGCACCATTGTCATCCTTTTGGAGAGGTGGAGTTGCAGCATTGATGAAAGTTTTCAAGCTTGAATATAAAGGAGGTGTCAAATTAAGACTTCGAGCTTGA

Protein sequence

MKRGRSGATLSSSSLAKAELHYRLPLEAAPLSSFWRGGVAALMKVFKLEYKGGVKLRLRA*
Homology
[Close]
BLAST of Csa6G101460 vs. TrEMBL
Match: A0A0A0KDP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G101460 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.0e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MKRGRSGATLSSSSLAKAELHYRLPLEAAPLSSFWRGGVAALMKVFKLEYKGGVKLRLRA 60
          MKRGRSGATLSSSSLAKAELHYRLPLEAAPLSSFWRGGVAALMKVFKLEYKGGVKLRLRA
Sbjct: 1  MKRGRSGATLSSSSLAKAELHYRLPLEAAPLSSFWRGGVAALMKVFKLEYKGGVKLRLRA 60

[Close]
BLAST of Csa6G101460 vs. NCBI nr
Match: gi|700191278|gb|KGN46482.1| (hypothetical protein Csa_6G101460 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MKRGRSGATLSSSSLAKAELHYRLPLEAAPLSSFWRGGVAALMKVFKLEYKGGVKLRLRA 60
          MKRGRSGATLSSSSLAKAELHYRLPLEAAPLSSFWRGGVAALMKVFKLEYKGGVKLRLRA
Sbjct: 1  MKRGRSGATLSSSSLAKAELHYRLPLEAAPLSSFWRGGVAALMKVFKLEYKGGVKLRLRA 60

The following BLAST results are available for this feature:
BLAST of Csa6G101460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDP0_CUCSA2.0e-24100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G101460 PE=4 SV=1[more]
BLAST of Csa6G101460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191278|gb|KGN46482.1|2.9e-24100.00hypothetical protein Csa_6G101460 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G101460.1Csa6G101460.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G101460CSPI06G08040Wild cucumber (PI 183967)cpicuB314
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G101460Wax gourdcuwgoB549
Csa6G101460Cucumber (Gy14) v1cgycuB490
Csa6G101460Cucurbita maxima (Rimu)cmacuB897
Csa6G101460Cucurbita maxima (Rimu)cmacuB911
Csa6G101460Cucurbita moschata (Rifu)cmocuB882
Csa6G101460Cucurbita moschata (Rifu)cmocuB897
Csa6G101460Melon (DHL92) v3.5.1cumeB442
Csa6G101460Watermelon (Charleston Gray)cuwcgB476
Csa6G101460Watermelon (97103) v1cuwmB544
Csa6G101460Cucurbita pepo (Zucchini)cpecuB318
Csa6G101460Cucurbita pepo (Zucchini)cpecuB331
Csa6G101460Bottle gourd (USVL1VR-Ls)culsiB402
Csa6G101460Cucumber (Gy14) v2cgybcuB282
Csa6G101460Melon (DHL92) v3.6.1cumedB422
Csa6G101460Silver-seed gourdcarcuB0089
Csa6G101460Silver-seed gourdcarcuB0093
Csa6G101460Watermelon (97103) v2cuwmbB468