Csa6G090770 (gene) Cucumber (Chinese Long) v2

NameCsa6G090770
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionAT3g47210/F13I12_260; contains IPR004158 (Protein of unknown function DUF247, plant)
LocationChr6 : 6135564 .. 6135929 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAGGTGGAAGAGGAGCAGACGCTGCTGCCCATGTATCGCAGAAATGAACATAAAGATCAATTACCAATGAACAAGAAAGATGTGGTAATTCAAGTCAAGAACAATCTGGAGAAACAGTTGACGGAATTAGTACTGGTGGACGAGTTCGGATCATCAGGAAAAACCATCAAACCTTCCATTTACAAAATTCCAAAGTTCATGAAAGATATCCAACCGAATGCGTACAAGCCACAGTTGGTGTTGTTTGGGCCATACCATCATGGGGACAAAGATTTGGTTACAATGGAACAGGAAAAACTGAAAGTGTTTCGGCATCTGGTAAAAGGTGATGCTGCCACTTACGAGTCAGATTTTGAGTAA

mRNA sequence

ATGGTGGAGGTGGAAGAGGAGCAGACGCTGCTGCCCATGTATCGCAGAAATGAACATAAAGATCAATTACCAATGAACAAGAAAGATGTGGTAATTCAAGTCAAGAACAATCTGGAGAAACAGTTGACGGAATTAGTACTGGTGGACGAGTTCGGATCATCAGGAAAAACCATCAAACCTTCCATTTACAAAATTCCAAAGTTCATGAAAGATATCCAACCGAATGCGTACAAGCCACAGTTGGTGTTGTTTGGGCCATACCATCATGGGGACAAAGATTTGGTTACAATGGAACAGGAAAAACTGAAAGTGTTTCGGCATCTGGTAAAAGGTGATGCTGCCACTTACGAGTCAGATTTTGAGTAA

Coding sequence (CDS)

ATGGTGGAGGTGGAAGAGGAGCAGACGCTGCTGCCCATGTATCGCAGAAATGAACATAAAGATCAATTACCAATGAACAAGAAAGATGTGGTAATTCAAGTCAAGAACAATCTGGAGAAACAGTTGACGGAATTAGTACTGGTGGACGAGTTCGGATCATCAGGAAAAACCATCAAACCTTCCATTTACAAAATTCCAAAGTTCATGAAAGATATCCAACCGAATGCGTACAAGCCACAGTTGGTGTTGTTTGGGCCATACCATCATGGGGACAAAGATTTGGTTACAATGGAACAGGAAAAACTGAAAGTGTTTCGGCATCTGGTAAAAGGTGATGCTGCCACTTACGAGTCAGATTTTGAGTAA

Protein sequence

MVEVEEEQTLLPMYRRNEHKDQLPMNKKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIKPSIYKIPKFMKDIQPNAYKPQLVLFGPYHHGDKDLVTMEQEKLKVFRHLVKGDAATYESDFE*
BLAST of Csa6G090770 vs. TrEMBL
Match: A0A0A0KDE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G090770 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.3e-62
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1

Query: 1   MVEVEEEQTLLPMYRRNEHKDQLPMNKKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIKP 60
           MVEVEEEQTLLPMYRRNEHKDQLPMNKKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIKP
Sbjct: 1   MVEVEEEQTLLPMYRRNEHKDQLPMNKKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIKP 60

Query: 61  SIYKIPKFMKDIQPNAYKPQLVLFGPYHHGDKDLVTMEQEKLKVFRHLVKGDAATYESDF 120
           SIYKIPKFMKDIQPNAYKPQLVLFGPYHHGDKDLVTMEQEKLKVFRHLVKGDAATYESDF
Sbjct: 61  SIYKIPKFMKDIQPNAYKPQLVLFGPYHHGDKDLVTMEQEKLKVFRHLVKGDAATYESDF 120

Query: 121 E 122
           E
Sbjct: 121 E 121

BLAST of Csa6G090770 vs. TrEMBL
Match: A0A0A0K9F5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G089270 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.1e-33
Identity = 73/119 (61.34%), Postives = 88/119 (73.95%), Query Frame = 1

Query: 1   MVEVEEEQTLLPMY-RRNEHKDQLPMNKKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIK 60
           M E EE Q LLP+Y R  +HKDQLP+    VV++VK+NL+K L + V V++ GSSGKTIK
Sbjct: 1   MAEAEENQMLLPIYCRSTDHKDQLPIMDNAVVVEVKDNLKKLLMKSVAVEKLGSSGKTIK 60

Query: 61  PSIYKIPKFMKDIQPNAYKPQLVLFGPYHHGDKDLVTMEQEKLKVFRHLVKGDAATYES 119
           PSIYKIP F+KD+   AY P +V FGPYHHG+K+L  MEQEKLKVFRHLV      YES
Sbjct: 61  PSIYKIPNFIKDVHKEAYMPHMVSFGPYHHGEKNLAPMEQEKLKVFRHLVDVKGVDYES 119

BLAST of Csa6G090770 vs. TrEMBL
Match: E5GB49_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-32
Identity = 81/121 (66.94%), Postives = 94/121 (77.69%), Query Frame = 1

Query: 1   MVEVEEEQTLLPMYRRNEHKDQLPMNKKDVVIQVKNNLEKQLTEL-VLVDEFGSSGKTIK 60
           MVEVEEE+T LP+   N+HKDQ PM+K DVVI VK+ L++ L +  V V+E  SS KTIK
Sbjct: 1   MVEVEEEETPLPISCINDHKDQFPMDKNDVVINVKDCLKELLMKRPVPVNESPSSEKTIK 60

Query: 61  PSIYKIPKFMKDIQPNAYKPQLVLFGPYHHGDKDLVTMEQEKLKVFRHLVKGD--AATYE 119
           PSIYKIPKFMKDIQ  AY+P LV FGPYHHG + L  ME+EK KVF+HLVKGD  AATYE
Sbjct: 61  PSIYKIPKFMKDIQLKAYEPYLVSFGPYHHGVEHLAPMEKEKQKVFQHLVKGDNNAATYE 120

BLAST of Csa6G090770 vs. TrEMBL
Match: E5GB51_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 5.0e-27
Identity = 64/118 (54.24%), Postives = 85/118 (72.03%), Query Frame = 1

Query: 1   MVEVEEEQTLLPMYRRNEHKDQLPMNKKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIK- 60
           M EVEEEQT LP+Y RN+HK  LP++K  VVI+V++NL+K    + + +        +K 
Sbjct: 16  MSEVEEEQTPLPIYHRNDHKGHLPIDKDSVVIKVRDNLKKLEWSVPVYESQSYLSMPLKR 75

Query: 61  PSIYKIPKFMKDIQPNAYKPQLVLFGPYHHGDKDLVTMEQEKLKVFRHLVKGDAATYE 118
            SIYKIPKFMKDI+P  Y+P +V FGPYHHG+K L  MEQ+K KVF+H+ K +AAT+E
Sbjct: 76  TSIYKIPKFMKDIEPKEYEPHMVSFGPYHHGNKHLHQMEQKKQKVFQHVAKDNAATFE 133

BLAST of Csa6G090770 vs. TrEMBL
Match: A0A0A0KF61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G089770 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-18
Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = 1

Query: 25 MNKKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIKPSIYKIPKFMKDIQPNAYKPQLVL 84
          MNKK+VVIQVKNN+E++LTELV V+EFGSS KTIKPSIYKIPKFMKDIQPNA KPQLV+
Sbjct: 1  MNKKNVVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVV 59

BLAST of Csa6G090770 vs. TAIR10
Match: AT3G47250.1 (AT3G47250.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-09
Identity = 34/114 (29.82%), Postives = 58/114 (50.88%), Query Frame = 1

Query: 2   VEVEEEQTLLPMYRRNEHKDQLPMNKKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIKPS 61
           + + +E  L P+ +R+E         + VV  +K NL+     L+L++  G +   I   
Sbjct: 16  ISIIDEGPLSPLRQRSE---------RSVVSHIKRNLQSSGKPLILLESAGKASCCI--- 75

Query: 62  IYKIPKFMKDIQPNAYKPQLVLFGPYHHGDKDLVTMEQEKLKVFRHLVKGDAAT 116
            ++IP  + ++ P AYKP++V  GPYH+G+  L  ++Q K +     V  D AT
Sbjct: 76  -FRIPDSLAEVNPKAYKPKVVSIGPYHYGENHLQMIQQHKFRFLELFV--DRAT 114

BLAST of Csa6G090770 vs. TAIR10
Match: AT3G47210.1 (AT3G47210.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 53.1 bits (126), Expect = 1.4e-07
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 1

Query: 62  IYKIPKFMKDIQPNAYKPQLVLFGPYHHGDKDLVTMEQEKLKVFRHL 109
           I+++PK   ++ P AYKP++V  GPYHHG K L  ++Q KL+ F HL
Sbjct: 95  IFRVPKSFAEMNPEAYKPKVVSIGPYHHGRKHLEMIQQHKLR-FLHL 140

BLAST of Csa6G090770 vs. TAIR10
Match: AT3G50160.1 (AT3G50160.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 51.2 bits (121), Expect = 5.2e-07
Identity = 25/79 (31.65%), Postives = 45/79 (56.96%), Query Frame = 1

Query: 31  VIQVKNNLEKQLTELVLV---DEFGSSGKTIKPS-----IYKIPKFMKDIQPNAYKPQLV 90
           V+ +++  E++L E+ ++   D+  + G     S     IY++P ++++    +Y PQ+V
Sbjct: 67  VVSIEDKNEQKLREIWVISLNDKMKTLGDNATTSWDNLCIYRVPPYLQENDTKSYMPQIV 126

Query: 91  LFGPYHHGDKDLVTMEQEK 102
             GPYHHG K L+ ME+ K
Sbjct: 127 SIGPYHHGHKHLMPMERHK 145

BLAST of Csa6G090770 vs. TAIR10
Match: AT3G50130.1 (AT3G50130.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-06
Identity = 26/92 (28.26%), Postives = 52/92 (56.52%), Query Frame = 1

Query: 11  LPMYRRNEHKDQLPMN-KKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIKPSIYKIPKFM 70
           L M ++ + ++Q P   +++ VI +++ +E+ L E        ++    K  IY++P+++
Sbjct: 96  LMMRQKLQKQNQKPEETREEWVISIRDKMEQALRE-------DATTSWDKLCIYRVPQYL 155

Query: 71  KDIQPNAYKPQLVLFGPYHHGDKDLVTMEQEK 102
           ++    +Y PQ V  GP+HHG+K L+ M++ K
Sbjct: 156 QENNKKSYFPQTVSLGPFHHGNKHLLPMDRHK 180

BLAST of Csa6G090770 vs. TAIR10
Match: AT3G50150.1 (AT3G50150.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 49.7 bits (117), Expect = 1.5e-06
Identity = 27/85 (31.76%), Postives = 45/85 (52.94%), Query Frame = 1

Query: 18  EHKDQLPMN-KKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIKPSIYKIPKFMKDIQPNA 77
           E K++ P   +++ VI +K+ +EK L+       + ++    K  IY++P ++++    +
Sbjct: 54  EVKEEKPRETREEWVISIKDKMEKALS-------YDATNSWDKLCIYRVPFYLQENDKKS 113

Query: 78  YKPQLVLFGPYHHGDKDLVTMEQEK 102
           Y PQ V  GPYHHG   L  ME+ K
Sbjct: 114 YLPQTVSIGPYHHGKVHLRPMERHK 131

BLAST of Csa6G090770 vs. NCBI nr
Match: gi|700191198|gb|KGN46402.1| (hypothetical protein Csa_6G090770 [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 1.8e-62
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1

Query: 1   MVEVEEEQTLLPMYRRNEHKDQLPMNKKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIKP 60
           MVEVEEEQTLLPMYRRNEHKDQLPMNKKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIKP
Sbjct: 1   MVEVEEEQTLLPMYRRNEHKDQLPMNKKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIKP 60

Query: 61  SIYKIPKFMKDIQPNAYKPQLVLFGPYHHGDKDLVTMEQEKLKVFRHLVKGDAATYESDF 120
           SIYKIPKFMKDIQPNAYKPQLVLFGPYHHGDKDLVTMEQEKLKVFRHLVKGDAATYESDF
Sbjct: 61  SIYKIPKFMKDIQPNAYKPQLVLFGPYHHGDKDLVTMEQEKLKVFRHLVKGDAATYESDF 120

Query: 121 E 122
           E
Sbjct: 121 E 121

BLAST of Csa6G090770 vs. NCBI nr
Match: gi|700191196|gb|KGN46400.1| (hypothetical protein Csa_6G089270 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 8.8e-33
Identity = 73/119 (61.34%), Postives = 88/119 (73.95%), Query Frame = 1

Query: 1   MVEVEEEQTLLPMY-RRNEHKDQLPMNKKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIK 60
           M E EE Q LLP+Y R  +HKDQLP+    VV++VK+NL+K L + V V++ GSSGKTIK
Sbjct: 1   MAEAEENQMLLPIYCRSTDHKDQLPIMDNAVVVEVKDNLKKLLMKSVAVEKLGSSGKTIK 60

Query: 61  PSIYKIPKFMKDIQPNAYKPQLVLFGPYHHGDKDLVTMEQEKLKVFRHLVKGDAATYES 119
           PSIYKIP F+KD+   AY P +V FGPYHHG+K+L  MEQEKLKVFRHLV      YES
Sbjct: 61  PSIYKIPNFIKDVHKEAYMPHMVSFGPYHHGEKNLAPMEQEKLKVFRHLVDVKGVDYES 119

BLAST of Csa6G090770 vs. NCBI nr
Match: gi|659120434|ref|XP_008460192.1| (PREDICTED: uncharacterized protein LOC103499077 [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 2.6e-32
Identity = 81/121 (66.94%), Postives = 94/121 (77.69%), Query Frame = 1

Query: 1   MVEVEEEQTLLPMYRRNEHKDQLPMNKKDVVIQVKNNLEKQLTEL-VLVDEFGSSGKTIK 60
           MVEVEEE+T LP+   N+HKDQ PM+K DVVI VK+ L++ L +  V V+E  SS KTIK
Sbjct: 462 MVEVEEEETPLPISCINDHKDQFPMDKNDVVINVKDCLKELLMKRPVPVNESPSSEKTIK 521

Query: 61  PSIYKIPKFMKDIQPNAYKPQLVLFGPYHHGDKDLVTMEQEKLKVFRHLVKGD--AATYE 119
           PSIYKIPKFMKDIQ  AY+P LV FGPYHHG + L  ME+EK KVF+HLVKGD  AATYE
Sbjct: 522 PSIYKIPKFMKDIQLKAYEPYLVSFGPYHHGVEHLAPMEKEKQKVFQHLVKGDNNAATYE 581

BLAST of Csa6G090770 vs. NCBI nr
Match: gi|659120434|ref|XP_008460192.1| (PREDICTED: uncharacterized protein LOC103499077 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-12
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 1

Query: 31  VIQVKNNLEKQLTELVLVDEFGSSGKTIKPSIYKIPKFMKDIQPNAYKPQLVLFGPYHHG 90
           V+   N L  +L E + ++EF S+   IKPSIYKIP+F++++ P AY+P+LV  GPYH+G
Sbjct: 9   VVNEVNELLSKLEESIGMEEFLSTQHMIKPSIYKIPQFIREVNPKAYEPKLVSLGPYHYG 68

Query: 91  DKDLVTMEQEKLKVFRH 108
              L+ ME+EK K F H
Sbjct: 69  KPHLLPMEREKYKAFLH 85


HSP 2 Score: 146.7 bits (369), Expect = 2.6e-32
Identity = 81/121 (66.94%), Postives = 94/121 (77.69%), Query Frame = 1

Query: 1   MVEVEEEQTLLPMYRRNEHKDQLPMNKKDVVIQVKNNLEKQLTEL-VLVDEFGSSGKTIK 60
           MVEVEEE+T LP+   N+HKDQ PM+K DVVI VK+ L++ L +  V V+E  SS KTIK
Sbjct: 1   MVEVEEEETPLPISCINDHKDQFPMDKNDVVINVKDCLKELLMKRPVPVNESPSSEKTIK 60

Query: 61  PSIYKIPKFMKDIQPNAYKPQLVLFGPYHHGDKDLVTMEQEKLKVFRHLVKGD--AATYE 119
           PSIYKIPKFMKDIQ  AY+P LV FGPYHHG + L  ME+EK KVF+HLVKGD  AATYE
Sbjct: 61  PSIYKIPKFMKDIQLKAYEPYLVSFGPYHHGVEHLAPMEKEKQKVFQHLVKGDNNAATYE 120

BLAST of Csa6G090770 vs. NCBI nr
Match: gi|659119942|ref|XP_008459926.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 7.2e-27
Identity = 64/118 (54.24%), Postives = 85/118 (72.03%), Query Frame = 1

Query: 1   MVEVEEEQTLLPMYRRNEHKDQLPMNKKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIK- 60
           M EVEEEQT LP+Y RN+HK  LP++K  VVI+V++NL+K    + + +        +K 
Sbjct: 1   MSEVEEEQTPLPIYHRNDHKGHLPIDKDSVVIKVRDNLKKLEWSVPVYESQSYLSMPLKR 60

Query: 61  PSIYKIPKFMKDIQPNAYKPQLVLFGPYHHGDKDLVTMEQEKLKVFRHLVKGDAATYE 118
            SIYKIPKFMKDI+P  Y+P +V FGPYHHG+K L  MEQ+K KVF+H+ K +AAT+E
Sbjct: 61  TSIYKIPKFMKDIEPKEYEPHMVSFGPYHHGNKHLHQMEQKKQKVFQHVAKDNAATFE 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KDE1_CUCSA1.3e-62100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G090770 PE=4 SV=1[more]
A0A0A0K9F5_CUCSA6.1e-3361.34Uncharacterized protein OS=Cucumis sativus GN=Csa_6G089270 PE=4 SV=1[more]
E5GB49_CUCME1.8e-3266.94Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GB51_CUCME5.0e-2754.24Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KF61_CUCSA1.5e-1884.75Uncharacterized protein OS=Cucumis sativus GN=Csa_6G089770 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G47250.12.5e-0929.82 Plant protein of unknown function (DUF247)[more]
AT3G47210.11.4e-0748.94 Plant protein of unknown function (DUF247)[more]
AT3G50160.15.2e-0731.65 Plant protein of unknown function (DUF247)[more]
AT3G50130.11.2e-0628.26 Plant protein of unknown function (DUF247)[more]
AT3G50150.11.5e-0631.76 Plant protein of unknown function (DUF247)[more]
Match NameE-valueIdentityDescription
gi|700191198|gb|KGN46402.1|1.8e-62100.00hypothetical protein Csa_6G090770 [Cucumis sativus][more]
gi|700191196|gb|KGN46400.1|8.8e-3361.34hypothetical protein Csa_6G089270 [Cucumis sativus][more]
gi|659120434|ref|XP_008460192.1|2.6e-3266.94PREDICTED: uncharacterized protein LOC103499077 [Cucumis melo][more]
gi|659120434|ref|XP_008460192.1|2.9e-1248.05PREDICTED: uncharacterized protein LOC103499077 [Cucumis melo][more]
gi|659119942|ref|XP_008459926.1|7.2e-2754.24PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004158DUF247_pln
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G090770.1Csa6G090770.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004158Protein of unknown function DUF247, plantPFAMPF03140DUF247coord: 62..111
score: 6.9
NoneNo IPR availablePANTHERPTHR31549FAMILY NOT NAMEDcoord: 15..110
score: 1.3
NoneNo IPR availablePANTHERPTHR31549:SF19SUBFAMILY NOT NAMEDcoord: 15..110
score: 1.3

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G090770Lsi09G017760Bottle gourd (USVL1VR-Ls)culsiB402
The following gene(s) are paralogous to this gene:

None