Csa6G089770 (gene) Cucumber (Chinese Long) v2

NameCsa6G089770
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein; contains IPR004158 (Protein of unknown function DUF247, plant)
LocationChr6 : 6128972 .. 6129536 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAGAAAAACGTGGTAATTCAAGTCAAGAACAATATGGAGGAACGGCTGACGGAATTAGTACCGGTGAACGAGTTTGGATCATCAAGAAAAACCATCAAACCTTCCATTTACAAAATACCAAAGTTCATGAAAGATATCCAACCGAATGCGGACAAGCCACAGTTGGTTGTCGTTTGGGCCATACCATCATGGGGACGAGGATTTGGTTACAATGGAACAGGAAAAACTGAAAGTGTTTTGGCATCTGGTAAAGGGTGATGTTGCCACTTACGAGTCGATTTTGAGTCAAGTGTCGAACATTTTGGAAGATCTATATGCAGCATAAGATCATCTTGAAGAGTATTGGAGGGAGAATGCTGTCAAGTTCATGGAGATGATGATTATAGATGCGTGTTTCGTGCTGGTTTTCTTCTCGAAAGATAAAATTTACAAGTCGCTAATTACTTTCAAATCAGATATAAAACGAGACATTTTGTTGCTTGAGAATCAGCTGCCTTTCCAACTTCTTCAACTGATGTATGAAATATTCCCACTTAAGGTACATATTCTTAATCTATGA

mRNA sequence

ATGAACAAGAAAAACGTGGTAATTCAAGTCAAGAACAATATGGAGGAACGGCTGACGGAATTAGTACCGGTGAACGAGTTTGGATCATCAAGAAAAACCATCAAACCTTCCATTTACAAAATACCAAAGTTCATGAAAGATATCCAACCGAATGCGGACAAGCCACAGTTGGTTGTCGTTTGGGCCATACCATCATGGGGACGAGGATTTGGTTACAATGGAACAGGAAAAACTGAAAGTGTTTTGGCATCTGATCATCTTGAAGAGTATTGGAGGGAGAATGCTGTCAAGTTCATGGAGATGATGATTATAGATGCGTGTTTCGTGCTGGTTTTCTTCTCGAAAGATAAAATTTACAAGTCGCTAATTACTTTCAAATCAGATATAAAACGAGACATTTTGTTGCTTGAGAATCAGCTGCCTTTCCAACTTCTTCAACTGATGTATGAAATATTCCCACTTAAGGTACATATTCTTAATCTATGA

Coding sequence (CDS)

ATGAACAAGAAAAACGTGGTAATTCAAGTCAAGAACAATATGGAGGAACGGCTGACGGAATTAGTACCGGTGAACGAGTTTGGATCATCAAGAAAAACCATCAAACCTTCCATTTACAAAATACCAAAGTTCATGAAAGATATCCAACCGAATGCGGACAAGCCACAGTTGGTTGTCGTTTGGGCCATACCATCATGGGGACGAGGATTTGGTTACAATGGAACAGGAAAAACTGAAAGTGTTTTGGCATCTGATCATCTTGAAGAGTATTGGAGGGAGAATGCTGTCAAGTTCATGGAGATGATGATTATAGATGCGTGTTTCGTGCTGGTTTTCTTCTCGAAAGATAAAATTTACAAGTCGCTAATTACTTTCAAATCAGATATAAAACGAGACATTTTGTTGCTTGAGAATCAGCTGCCTTTCCAACTTCTTCAACTGATGTATGAAATATTCCCACTTAAGGTACATATTCTTAATCTATGA

Protein sequence

MNKKNVVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVVVWAIPSWGRGFGYNGTGKTESVLASDHLEEYWRENAVKFMEMMIIDACFVLVFFSKDKIYKSLITFKSDIKRDILLLENQLPFQLLQLMYEIFPLKVHILNL*
BLAST of Csa6G089770 vs. TrEMBL
Match: A0A0A0KF61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G089770 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 2.9e-86
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1

Query: 1   MNKKNVVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVVV 60
           MNKKNVVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVVV
Sbjct: 1   MNKKNVVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVVV 60

Query: 61  WAIPSWGRGFGYNGTGKTESVLASDHLEEYWRENAVKFMEMMIIDACFVLVFFSKDKIYK 120
           WAIPSWGRGFGYNGTGKTESVLASDHLEEYWRENAVKFMEMMIIDACFVLVFFSKDKIYK
Sbjct: 61  WAIPSWGRGFGYNGTGKTESVLASDHLEEYWRENAVKFMEMMIIDACFVLVFFSKDKIYK 120

Query: 121 SLITFKSDIKRDILLLENQLPFQLLQLMYEIFPLKVHILNL 162
           SLITFKSDIKRDILLLENQLPFQLLQLMYEIFPLKVHILNL
Sbjct: 121 SLITFKSDIKRDILLLENQLPFQLLQLMYEIFPLKVHILNL 161

BLAST of Csa6G089770 vs. TrEMBL
Match: E5GB49_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.1e-36
Identity = 100/190 (52.63%), Postives = 120/190 (63.16%), Query Frame = 1

Query: 1   MNKKNVVIQVKNNMEERLTEL-VPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVV 60
           M+K +VVI VK+ ++E L +  VPVNE  SS KTIKPSIYKIPKFMKDIQ  A +P LV 
Sbjct: 25  MDKNDVVINVKDCLKELLMKRPVPVNESPSSEKTIKPSIYKIPKFMKDIQLKAYEPYLV- 84

Query: 61  VWAIPSWGRGF-------------------GYNGTGKTESVL------------ASDHLE 120
             +   +  G                    G N     ES+             A D+L+
Sbjct: 85  --SFGPYHHGVEHLAPMEKEKQKVFQHLVKGDNNAATYESIASEVSNILEDLYAAYDNLD 144

Query: 121 EYWRENAV---KFMEMMIIDACFVLVFFSKDKIYKSLITFKSDIKRDILLLENQLPFQLL 156
           E WR++ V   KFMEMMIIDACF+LVFFSKDK YKSL+T +SDIKRDILLLENQLPFQLL
Sbjct: 145 EKWRKDVVASAKFMEMMIIDACFILVFFSKDKSYKSLMTLRSDIKRDILLLENQLPFQLL 204

BLAST of Csa6G089770 vs. TrEMBL
Match: E5GB51_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.9e-19
Identity = 54/80 (67.50%), Postives = 65/80 (81.25%), Query Frame = 1

Query: 85  DHLEEYWREN---AVKFMEMMIIDACFVLVFFSKDKIYKSLITFKSDIKRDILLLENQLP 144
           DH  E WR++     KFM+MMIIDACF+LVFFS+D+ YKS IT KS+IKRDILLLENQLP
Sbjct: 154 DH--EKWRKDDDAQAKFMQMMIIDACFLLVFFSEDERYKSQITSKSEIKRDILLLENQLP 213

Query: 145 FQLLQLMYEIFPLKVHILNL 162
           F+LLQL+Y I  +KV +LNL
Sbjct: 214 FKLLQLLYSISSIKVRVLNL 231

BLAST of Csa6G089770 vs. TrEMBL
Match: E5GB51_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.3e-08
Identity = 64/210 (30.48%), Postives = 90/210 (42.86%), Query Frame = 1

Query: 1   MNKKNVVIQVKNNMEERLTELVPVNEFGS--SRKTIKPSIYKIPKFMKDIQPNADKPQLV 60
           ++K +VVI+V++N++ +L   VPV E  S  S    + SIYKIPKFMKDI+P   +P +V
Sbjct: 40  IDKDSVVIKVRDNLK-KLEWSVPVYESQSYLSMPLKRTSIYKIPKFMKDIEPKEYEPHMV 99

Query: 61  VVWAIPSWGRGFGYNGTGKTESVLASDHLEEYWRENAVKFMEMMIIDAC-FVLVFFSKDK 120
                      FG    G       + HL +  ++    F  +   +A  F L+     K
Sbjct: 100 ----------SFGPYHHG-------NKHLHQMEQKKQKVFQHVAKDNAATFELILSEVSK 159

Query: 121 IYKSLITFKSDIK----------------------------------------------R 162
           I + L     D+                                               R
Sbjct: 160 ILEDLYEAYDDLDHEKWRKDDDAQAKFMQMMIIDACFLLVFFSEDERYKSQITSKSEIKR 219


HSP 2 Score: 100.5 bits (249), Expect = 2.0e-18
Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = 1

Query: 1  MNKKNVVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVV 60
          MNKK+VVIQVKNN+E++LTELV V+EFGSS KTIKPSIYKIPKFMKDIQPNA KPQLV+
Sbjct: 25 MNKKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIKPSIYKIPKFMKDIQPNAYKPQLVL 83

BLAST of Csa6G089770 vs. TrEMBL
Match: A0A0A0KAA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091270 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.7e-10
Identity = 53/172 (30.81%), Postives = 86/172 (50.00%), Query Frame = 1

Query: 7   VIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQP-------------NAD 66
           V+   N +  +L E + + EF S++  IKPSIYKIP+F++++ P             +  
Sbjct: 12  VVNEVNALLSKLEESIGMEEFLSTQH-IKPSIYKIPQFIREVNPKAYEPKLVSLGPYHYG 71

Query: 67  KPQLVVVWAIPSWG-RGFGYNGTGKTESVLAS-------------DHLEEYWRENAVKFM 126
           KP L+ +          F        ES++ S             D+L++ W+E+   F+
Sbjct: 72  KPHLLPMEREKHKAFLHFKARNNLYLESIVDSVCSILEDLLGSYDDNLDDRWKEDVAMFL 131

Query: 127 EMMIIDACFVLVFFSKDKIYKSLITFKSDIKRDILLLENQLPFQLLQLMYEI 152
           ++MI+D CFVL   S+            DIKRD++LLENQLP QLL+ ++ +
Sbjct: 132 KLMIVDGCFVLDLISELSSKSLGRCMIWDIKRDMVLLENQLPLQLLKQLHAL 182

BLAST of Csa6G089770 vs. TAIR10
Match: AT3G44710.1 (AT3G44710.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-06
Identity = 32/98 (32.65%), Postives = 49/98 (50.00%), Query Frame = 1

Query: 68  RGFGYNGTGKTESVLASDHLEEYWRE---NAVKFMEMMIIDACFVLVFF----------- 127
           +G   NG  K  SVL  D  + Y      +  K +EMM++D CF+L+ F           
Sbjct: 103 KGVDTNGLIKAVSVLEEDIRDSYSESLYSDGKKLIEMMVLDGCFILMIFLVVAGVVSHSE 162

Query: 128 -SKDKIYKSLITFKSDIKRDILLLENQLPFQLLQLMYE 151
              D I+ ++      I+ D++LLENQ+PF LLQ +++
Sbjct: 163 IENDPIF-AIPWILPAIRNDLILLENQVPFFLLQTIFD 199

BLAST of Csa6G089770 vs. NCBI nr
Match: gi|700191197|gb|KGN46401.1| (hypothetical protein Csa_6G089770 [Cucumis sativus])

HSP 1 Score: 325.9 bits (834), Expect = 4.1e-86
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1

Query: 1   MNKKNVVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVVV 60
           MNKKNVVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVVV
Sbjct: 1   MNKKNVVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVVV 60

Query: 61  WAIPSWGRGFGYNGTGKTESVLASDHLEEYWRENAVKFMEMMIIDACFVLVFFSKDKIYK 120
           WAIPSWGRGFGYNGTGKTESVLASDHLEEYWRENAVKFMEMMIIDACFVLVFFSKDKIYK
Sbjct: 61  WAIPSWGRGFGYNGTGKTESVLASDHLEEYWRENAVKFMEMMIIDACFVLVFFSKDKIYK 120

Query: 121 SLITFKSDIKRDILLLENQLPFQLLQLMYEIFPLKVHILNL 162
           SLITFKSDIKRDILLLENQLPFQLLQLMYEIFPLKVHILNL
Sbjct: 121 SLITFKSDIKRDILLLENQLPFQLLQLMYEIFPLKVHILNL 161

BLAST of Csa6G089770 vs. NCBI nr
Match: gi|659120434|ref|XP_008460192.1| (PREDICTED: uncharacterized protein LOC103499077 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 3.0e-36
Identity = 100/190 (52.63%), Postives = 120/190 (63.16%), Query Frame = 1

Query: 1   MNKKNVVIQVKNNMEERLTEL-VPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVV 60
           M+K +VVI VK+ ++E L +  VPVNE  SS KTIKPSIYKIPKFMKDIQ  A +P LV 
Sbjct: 486 MDKNDVVINVKDCLKELLMKRPVPVNESPSSEKTIKPSIYKIPKFMKDIQLKAYEPYLV- 545

Query: 61  VWAIPSWGRGF-------------------GYNGTGKTESVL------------ASDHLE 120
             +   +  G                    G N     ES+             A D+L+
Sbjct: 546 --SFGPYHHGVEHLAPMEKEKQKVFQHLVKGDNNAATYESIASEVSNILEDLYAAYDNLD 605

Query: 121 EYWRENAV---KFMEMMIIDACFVLVFFSKDKIYKSLITFKSDIKRDILLLENQLPFQLL 156
           E WR++ V   KFMEMMIIDACF+LVFFSKDK YKSL+T +SDIKRDILLLENQLPFQLL
Sbjct: 606 EKWRKDVVASAKFMEMMIIDACFILVFFSKDKSYKSLMTLRSDIKRDILLLENQLPFQLL 665

BLAST of Csa6G089770 vs. NCBI nr
Match: gi|659120434|ref|XP_008460192.1| (PREDICTED: uncharacterized protein LOC103499077 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 4.3e-11
Identity = 53/172 (30.81%), Postives = 86/172 (50.00%), Query Frame = 1

Query: 7   VIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQP-------------NAD 66
           V+   N +  +L E + + EF S++  IKPSIYKIP+F++++ P             +  
Sbjct: 9   VVNEVNELLSKLEESIGMEEFLSTQHMIKPSIYKIPQFIREVNPKAYEPKLVSLGPYHYG 68

Query: 67  KPQLVVVWAIPSWG-RGFGYNGTGKTESVLAS-------------DHLEEYWRENAVKFM 126
           KP L+ +          F        ES++ S             D+L++ W+E+   F+
Sbjct: 69  KPHLLPMEREKYKAFLHFKARNNLYLESIVDSVCSILEDLLGSYDDNLDDIWKEDVAMFL 128

Query: 127 EMMIIDACFVLVFFSKDKIYKSLITFKSDIKRDILLLENQLPFQLLQLMYEI 152
           ++MI+D CFVL   S+            DIKRD++LLENQLP QLL+ ++ +
Sbjct: 129 KLMIVDGCFVLDLISELSSKSLGRCMIWDIKRDMVLLENQLPLQLLKQLHAL 180


HSP 2 Score: 160.2 bits (404), Expect = 3.0e-36
Identity = 100/190 (52.63%), Postives = 120/190 (63.16%), Query Frame = 1

Query: 1   MNKKNVVIQVKNNMEERLTEL-VPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVV 60
           M+K +VVI VK+ ++E L +  VPVNE  SS KTIKPSIYKIPKFMKDIQ  A +P LV 
Sbjct: 25  MDKNDVVINVKDCLKELLMKRPVPVNESPSSEKTIKPSIYKIPKFMKDIQLKAYEPYLV- 84

Query: 61  VWAIPSWGRGF-------------------GYNGTGKTESVL------------ASDHLE 120
             +   +  G                    G N     ES+             A D+L+
Sbjct: 85  --SFGPYHHGVEHLAPMEKEKQKVFQHLVKGDNNAATYESIASEVSNILEDLYAAYDNLD 144

Query: 121 EYWRENAV---KFMEMMIIDACFVLVFFSKDKIYKSLITFKSDIKRDILLLENQLPFQLL 156
           E WR++ V   KFMEMMIIDACF+LVFFSKDK YKSL+T +SDIKRDILLLENQLPFQLL
Sbjct: 145 EKWRKDVVASAKFMEMMIIDACFILVFFSKDKSYKSLMTLRSDIKRDILLLENQLPFQLL 204

BLAST of Csa6G089770 vs. NCBI nr
Match: gi|307135821|gb|ADN33693.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 102.8 bits (255), Expect = 5.6e-19
Identity = 54/80 (67.50%), Postives = 65/80 (81.25%), Query Frame = 1

Query: 85  DHLEEYWREN---AVKFMEMMIIDACFVLVFFSKDKIYKSLITFKSDIKRDILLLENQLP 144
           DH  E WR++     KFM+MMIIDACF+LVFFS+D+ YKS IT KS+IKRDILLLENQLP
Sbjct: 154 DH--EKWRKDDDAQAKFMQMMIIDACFLLVFFSEDERYKSQITSKSEIKRDILLLENQLP 213

Query: 145 FQLLQLMYEIFPLKVHILNL 162
           F+LLQL+Y I  +KV +LNL
Sbjct: 214 FKLLQLLYSISSIKVRVLNL 231

BLAST of Csa6G089770 vs. NCBI nr
Match: gi|307135821|gb|ADN33693.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 65.9 bits (159), Expect = 7.6e-08
Identity = 64/210 (30.48%), Postives = 90/210 (42.86%), Query Frame = 1

Query: 1   MNKKNVVIQVKNNMEERLTELVPVNEFGS--SRKTIKPSIYKIPKFMKDIQPNADKPQLV 60
           ++K +VVI+V++N++ +L   VPV E  S  S    + SIYKIPKFMKDI+P   +P +V
Sbjct: 40  IDKDSVVIKVRDNLK-KLEWSVPVYESQSYLSMPLKRTSIYKIPKFMKDIEPKEYEPHMV 99

Query: 61  VVWAIPSWGRGFGYNGTGKTESVLASDHLEEYWRENAVKFMEMMIIDAC-FVLVFFSKDK 120
                      FG    G       + HL +  ++    F  +   +A  F L+     K
Sbjct: 100 ----------SFGPYHHG-------NKHLHQMEQKKQKVFQHVAKDNAATFELILSEVSK 159

Query: 121 IYKSLITFKSDIK----------------------------------------------R 162
           I + L     D+                                               R
Sbjct: 160 ILEDLYEAYDDLDHEKWRKDDDAQAKFMQMMIIDACFLLVFFSEDERYKSQITSKSEIKR 219


HSP 2 Score: 100.5 bits (249), Expect = 2.8e-18
Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = 1

Query: 1  MNKKNVVIQVKNNMEERLTELVPVNEFGSSRKTIKPSIYKIPKFMKDIQPNADKPQLVV 60
          MNKK+VVIQVKNN+E++LTELV V+EFGSS KTIKPSIYKIPKFMKDIQPNA KPQLV+
Sbjct: 25 MNKKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIKPSIYKIPKFMKDIQPNAYKPQLVL 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KF61_CUCSA2.9e-86100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G089770 PE=4 SV=1[more]
E5GB49_CUCME2.1e-3652.63Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GB51_CUCME3.9e-1967.50Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GB51_CUCME5.3e-0830.48Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KAA3_CUCSA9.7e-1030.81Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091270 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G44710.12.0e-0632.65 Plant protein of unknown function (DUF247)[more]
Match NameE-valueIdentityDescription
gi|700191197|gb|KGN46401.1|4.1e-86100.00hypothetical protein Csa_6G089770 [Cucumis sativus][more]
gi|659120434|ref|XP_008460192.1|3.0e-3652.63PREDICTED: uncharacterized protein LOC103499077 [Cucumis melo][more]
gi|659120434|ref|XP_008460192.1|4.3e-1130.81PREDICTED: uncharacterized protein LOC103499077 [Cucumis melo][more]
gi|307135821|gb|ADN33693.1|5.6e-1967.50hypothetical protein [Cucumis melo subsp. melo][more]
gi|307135821|gb|ADN33693.1|7.6e-0830.48hypothetical protein [Cucumis melo subsp. melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004158DUF247_pln
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G089770.1Csa6G089770.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004158Protein of unknown function DUF247, plantPFAMPF03140DUF247coord: 94..151
score: 3.5

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None