Csa6G089260 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G089260
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionSIL1
LocationChr6 : 6121428 .. 6121767 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCGTTCCCTAGTTGTTGGGCTCTGTTTATGGTTCTCTCTGACATTGGTGATTGCAGATGCAAATGACTCTTCTTTGGAAGGTTTAATCTGGTCTTCTGCTAAACAAGAGGGCTACCTCCTTATCGACCATAGGCCCCAGGAAAATTCCGCCGCCGCCGCCGCTGCACCTGTCGTTCACGACGCCGATGGCTTTGATGGCGGCTTTTCTTCCCTCGATAGCATGTTACAGTGAGCTATAGGTACTCTTTTTTTCATTATTGTATTTCATGCTCCGATATTAAGTTCACGCCTTTAAATGGTAGTATTAGCAATCACTAGCATGACTGGAATTCATG

mRNA sequence

ATGAGGCGTTCCCTAGTTGTTGGGCTCTGTTTATGGTTCTCTCTGACATTGGTGATTGCAGATGCAAATGACTCTTCTTTGGAAGGTTTAATCTGGTCTTCTGCTAAACAAGAGGGCTACCTCCTTATCGACCATAGGCCCCAGGAAAATTCCGCCGCCGCCGCCGCTGCACCTGTCGTTCACGACGCCGATGGCTTTGATGGCGGCTTTTCTTCCCTCGATAGCATGTTACAGTGA

Coding sequence (CDS)

ATGAGGCGTTCCCTAGTTGTTGGGCTCTGTTTATGGTTCTCTCTGACATTGGTGATTGCAGATGCAAATGACTCTTCTTTGGAAGGTTTAATCTGGTCTTCTGCTAAACAAGAGGGCTACCTCCTTATCGACCATAGGCCCCAGGAAAATTCCGCCGCCGCCGCCGCTGCACCTGTCGTTCACGACGCCGATGGCTTTGATGGCGGCTTTTCTTCCCTCGATAGCATGTTACAGTGA

Protein sequence

MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKQEGYLLIDHRPQENSAAAAAAPVVHDADGFDGGFSSLDSMLQ*
Homology
[Close]
BLAST of Csa6G089260 vs. TrEMBL
Match: A0A0A0KC32_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G089260 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 6.6e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKQEGYLLIDHRPQENSAAAAAAPVV 60
          MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKQEGYLLIDHRPQENSAAAAAAPVV
Sbjct: 1  MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKQEGYLLIDHRPQENSAAAAAAPVV 60

Query: 61 HDADGFDGGFSSLDSMLQ 79
          HDADGFDGGFSSLDSMLQ
Sbjct: 61 HDADGFDGGFSSLDSMLQ 78

[Close]
BLAST of Csa6G089260 vs. TrEMBL
Match: A0A0A0KA97_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G089250 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.8e-33
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 1 

Query: 1  MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKQEGYLLIDHRPQENSAAAAAAPVV 60
          MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKQEG LLIDHRPQE+S+AAAAA VV
Sbjct: 1  MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKQEGDLLIDHRPQEDSSAAAAASVV 60

Query: 61 HDADGFDGGFSSLDSMLQ 79
          HDADGFDGGFSSLDSMLQ
Sbjct: 61 HDADGFDGGFSSLDSMLQ 78

[Close]
BLAST of Csa6G089260 vs. TrEMBL
Match: E5GB48_CUCME (SIL1 OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.5e-24
Identity = 62/78 (79.49%), Postives = 65/78 (83.33%), Query Frame = 1 

Query: 1  MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKQEGYLLIDHRPQENSAAAAAAPVV 60
          MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAK++             +AAAAAPVV
Sbjct: 1  MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKED-------------SAAAAAPVV 60

Query: 61 HDADGFDGGFSSLDSMLQ 79
          HDADGFDGGFSSLDSMLQ
Sbjct: 61 HDADGFDGGFSSLDSMLQ 65

[Close]
BLAST of Csa6G089260 vs. TrEMBL
Match: A0A067JKB1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23056 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-06
Identity = 36/79 (45.57%), Postives = 44/79 (55.70%), Query Frame = 1 

Query: 6  VVGLCLWFSLTLVIADANDS------SLEGLIWSSAKQEGYLLIDHRPQENSAAAAAAPV 65
          V+G+   F    VI  A         S  GL WSSAK+E  L++   P ++S+AA A   
Sbjct: 10 VIGILAAFMTVTVIGVAEGERFNITPSTGGLFWSSAKEESDLMLKAEPDKDSSAAVA--- 69

Query: 66 VHDADGFDGGFSSLDSMLQ 79
          V D DG DGGFSSLD MLQ
Sbjct: 70 VSDPDGLDGGFSSLDGMLQ 85

[Close]
BLAST of Csa6G089260 vs. NCBI nr
Match: gi|700191195|gb|KGN46399.1| (hypothetical protein Csa_6G089260 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 9.4e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKQEGYLLIDHRPQENSAAAAAAPVV 60
          MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKQEGYLLIDHRPQENSAAAAAAPVV
Sbjct: 1  MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKQEGYLLIDHRPQENSAAAAAAPVV 60

Query: 61 HDADGFDGGFSSLDSMLQ 79
          HDADGFDGGFSSLDSMLQ
Sbjct: 61 HDADGFDGGFSSLDSMLQ 78

[Close]
BLAST of Csa6G089260 vs. NCBI nr
Match: gi|778711700|ref|XP_011656782.1| (PREDICTED: nucleotide exchange factor SIL1 isoform X2 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 9.7e-33
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 1 

Query: 1  MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKQEGYLLIDHRPQENSAAAAAAPVV 60
          MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKQEG LLIDHRPQE+S+AAAAA VV
Sbjct: 1  MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKQEGDLLIDHRPQEDSSAAAAASVV 60

Query: 61 HDADGFDGGFSSLDSMLQ 79
          HDADGFDGGFSSLDSMLQ
Sbjct: 61 HDADGFDGGFSSLDSMLQ 78

[Close]
BLAST of Csa6G089260 vs. NCBI nr
Match: gi|778711696|ref|XP_004140659.2| (PREDICTED: nucleotide exchange factor SIL1 isoform X1 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 9.7e-33
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 1 

Query: 1  MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKQEGYLLIDHRPQENSAAAAAAPVV 60
          MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKQEG LLIDHRPQE+S+AAAAA VV
Sbjct: 1  MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKQEGDLLIDHRPQEDSSAAAAASVV 60

Query: 61 HDADGFDGGFSSLDSMLQ 79
          HDADGFDGGFSSLDSMLQ
Sbjct: 61 HDADGFDGGFSSLDSMLQ 78

[Close]
BLAST of Csa6G089260 vs. NCBI nr
Match: gi|659119946|ref|XP_008459928.1| (PREDICTED: hsp70 nucleotide exchange factor FES1 isoform X1 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 62/78 (79.49%), Postives = 65/78 (83.33%), Query Frame = 1 

Query: 1  MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKQEGYLLIDHRPQENSAAAAAAPVV 60
          MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAK++             +AAAAAPVV
Sbjct: 1  MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKED-------------SAAAAAPVV 60

Query: 61 HDADGFDGGFSSLDSMLQ 79
          HDADGFDGGFSSLDSMLQ
Sbjct: 61 HDADGFDGGFSSLDSMLQ 65

[Close]
BLAST of Csa6G089260 vs. NCBI nr
Match: gi|307135818|gb|ADN33690.1| (SIL1 [Cucumis melo subsp. melo])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 62/78 (79.49%), Postives = 65/78 (83.33%), Query Frame = 1 

Query: 1  MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKQEGYLLIDHRPQENSAAAAAAPVV 60
          MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAK++             +AAAAAPVV
Sbjct: 1  MRRSLVVGLCLWFSLTLVIADANDSSLEGLIWSSAKED-------------SAAAAAPVV 60

Query: 61 HDADGFDGGFSSLDSMLQ 79
          HDADGFDGGFSSLDSMLQ
Sbjct: 61 HDADGFDGGFSSLDSMLQ 65

The following BLAST results are available for this feature:
BLAST of Csa6G089260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KC32_CUCSA6.6e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G089260 PE=4 SV=1[more]
A0A0A0KA97_CUCSA6.8e-3394.87Uncharacterized protein OS=Cucumis sativus GN=Csa_6G089250 PE=4 SV=1[more]
E5GB48_CUCME7.5e-2479.49SIL1 OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A067JKB1_JATCU4.1e-0645.57Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23056 PE=4 SV=1[more]
BLAST of Csa6G089260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191195|gb|KGN46399.1|9.4e-36100.00hypothetical protein Csa_6G089260 [Cucumis sativus][more]
gi|778711700|ref|XP_011656782.1|9.7e-3394.87PREDICTED: nucleotide exchange factor SIL1 isoform X2 [Cucumis sativus][more]
gi|778711696|ref|XP_004140659.2|9.7e-3394.87PREDICTED: nucleotide exchange factor SIL1 isoform X1 [Cucumis sativus][more]
gi|659119946|ref|XP_008459928.1|1.1e-2379.49PREDICTED: hsp70 nucleotide exchange factor FES1 isoform X1 [Cucumis melo][more]
gi|307135818|gb|ADN33690.1|1.1e-2379.49SIL1 [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G089260.1Csa6G089260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G089260Bottle gourd (USVL1VR-Ls)culsiB402
Csa6G089260Cucumber (Gy14) v2cgybcuB282
Csa6G089260Melon (DHL92) v3.6.1cumedB422
Csa6G089260Silver-seed gourdcarcuB0012
Csa6G089260Silver-seed gourdcarcuB0995
Csa6G089260Watermelon (97103) v2cuwmbB468
Csa6G089260Wax gourdcuwgoB533
Csa6G089260Cucumber (Gy14) v1cgycuB490
Csa6G089260Cucurbita maxima (Rimu)cmacuB367
Csa6G089260Cucurbita maxima (Rimu)cmacuB903
Csa6G089260Cucurbita moschata (Rifu)cmocuB358
Csa6G089260Cucurbita moschata (Rifu)cmocuB889
Csa6G089260Melon (DHL92) v3.5.1cumeB442
Csa6G089260Watermelon (Charleston Gray)cuwcgB476
Csa6G089260Watermelon (97103) v1cuwmB537
Csa6G089260Cucurbita pepo (Zucchini)cpecuB142
Csa6G089260Cucurbita pepo (Zucchini)cpecuB322