Csa6G088030 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G088030
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 5983913 .. 5984508 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGGTAGATCCAAGGAGACAAAAAAACAGGAAGCAGAAAACCCTAGAAGGTAAGAGTAGTTAAGAAAATCGGTTAAGTTTGTTAAAAAGAAATGGCGAATCGTGGATTATCTACGGTGGAAGTGATGGAAGAAAAAAGGCAAAAGGAATAAGCCAAAACAGAGAAGGCGGCGCCGATGAGGAAGCCGGAGATCGGAGAGATGGCGATAAGGAAAAACCTCAAAGGCAAAGAGCAGCTGCTGCAGATCTATGGAAGCGGAAGGTAAAGGGATTTTCTTTTCTTTCTTTTCTTTCTTTTCTTTTTTCTTTATTTCCTTTTTGGGTTTTTGGTTACTCACTTTCATACACTAAAAACGATTCGCTTTTATTTATATATACAAAAGAAAAATTACGATATTAAATCTCGTCCCTTCGATTACTGGGCCCTACTCTTCATCCGTACCGCCACGTTATACCTAATTCTCAATCAACGGCTAGATCTCCACATGCTTCACGCTTTGCTACGGATGCTTTTGCCGGGTGGGTGGGGTTGTTTGTTTAAAATTACCCGACCCGACCCGGAAAATAATTGTAAAATGGTATTTTATGGTTAA

mRNA sequence

ATGGTAGGTAGATCCAAGGAGACAAAAAAACAGGAAGCAGAAAACCCTAGAAGTGATGGAAGAAAAAAGGCAAAAGGAATAAGCCAAAACAGAGAAGGCGGCGCCGATGAGGAAGCCGGAGATCGGAGAGATGGCGATAAGGAAAAACCTCAAAGGCAAAGAGCAGCTGCTGCAGATCTATGGAAGCGGAAGAAAAATTACGATATTAAATCTCGTCCCTTCGATTACTGGGCCCTACTCTTCATCCGTACCGCCACGTTATACCTAATTCTCAATCAACGGCTAGATCTCCACATGCTTCACGCTTTGCTACGGATGCTTTTGCCGGGTGGGTGGGGTTGTTTGTTTAAAATTACCCGACCCGACCCGGAAAATAATTGTAAAATGGTATTTTATGGTTAA

Coding sequence (CDS)

ATGGTAGGTAGATCCAAGGAGACAAAAAAACAGGAAGCAGAAAACCCTAGAAGTGATGGAAGAAAAAAGGCAAAAGGAATAAGCCAAAACAGAGAAGGCGGCGCCGATGAGGAAGCCGGAGATCGGAGAGATGGCGATAAGGAAAAACCTCAAAGGCAAAGAGCAGCTGCTGCAGATCTATGGAAGCGGAAGAAAAATTACGATATTAAATCTCGTCCCTTCGATTACTGGGCCCTACTCTTCATCCGTACCGCCACGTTATACCTAATTCTCAATCAACGGCTAGATCTCCACATGCTTCACGCTTTGCTACGGATGCTTTTGCCGGGTGGGTGGGGTTGTTTGTTTAAAATTACCCGACCCGACCCGGAAAATAATTGTAAAATGGTATTTTATGGTTAA

Protein sequence

MVGRSKETKKQEAENPRSDGRKKAKGISQNREGGADEEAGDRRDGDKEKPQRQRAAAADLWKRKKNYDIKSRPFDYWALLFIRTATLYLILNQRLDLHMLHALLRMLLPGGWGCLFKITRPDPENNCKMVFYG*
Homology
[Close]
BLAST of Csa6G088030 vs. TrEMBL
Match: A0A0A0K9C7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088030 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 3.3e-72
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1 

Query: 1   MVGRSKETKKQEAENPRSDGRKKAKGISQNREGGADEEAGDRRDGDKEKPQRQRAAAADL 60
           MVGRSKETKKQEAENPRSDGRKKAKGISQNREGGADEEAGDRRDGDKEKPQRQRAAAADL
Sbjct: 1   MVGRSKETKKQEAENPRSDGRKKAKGISQNREGGADEEAGDRRDGDKEKPQRQRAAAADL 60

Query: 61  WKRKKNYDIKSRPFDYWALLFIRTATLYLILNQRLDLHMLHALLRMLLPGGWGCLFKITR 120
           WKRKKNYDIKSRPFDYWALLFIRTATLYLILNQRLDLHMLHALLRMLLPGGWGCLFKITR
Sbjct: 61  WKRKKNYDIKSRPFDYWALLFIRTATLYLILNQRLDLHMLHALLRMLLPGGWGCLFKITR 120

Query: 121 PDPENNCKMVFYG 134
           PDPENNCKMVFYG
Sbjct: 121 PDPENNCKMVFYG 133

[Close]
BLAST of Csa6G088030 vs. NCBI nr
Match: gi|700191171|gb|KGN46375.1| (hypothetical protein Csa_6G088030 [Cucumis sativus])

HSP 1 Score: 278.9 bits (712), Expect = 4.8e-72
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1 

Query: 1   MVGRSKETKKQEAENPRSDGRKKAKGISQNREGGADEEAGDRRDGDKEKPQRQRAAAADL 60
           MVGRSKETKKQEAENPRSDGRKKAKGISQNREGGADEEAGDRRDGDKEKPQRQRAAAADL
Sbjct: 1   MVGRSKETKKQEAENPRSDGRKKAKGISQNREGGADEEAGDRRDGDKEKPQRQRAAAADL 60

Query: 61  WKRKKNYDIKSRPFDYWALLFIRTATLYLILNQRLDLHMLHALLRMLLPGGWGCLFKITR 120
           WKRKKNYDIKSRPFDYWALLFIRTATLYLILNQRLDLHMLHALLRMLLPGGWGCLFKITR
Sbjct: 61  WKRKKNYDIKSRPFDYWALLFIRTATLYLILNQRLDLHMLHALLRMLLPGGWGCLFKITR 120

Query: 121 PDPENNCKMVFYG 134
           PDPENNCKMVFYG
Sbjct: 121 PDPENNCKMVFYG 133

The following BLAST results are available for this feature:
BLAST of Csa6G088030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9C7_CUCSA3.3e-72100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088030 PE=4 SV=1[more]
BLAST of Csa6G088030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191171|gb|KGN46375.1|4.8e-72100.00hypothetical protein Csa_6G088030 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006810 transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU103497cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G088030.1Csa6G088030.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU103497CU103497transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G088030CSPI06G07020Wild cucumber (PI 183967)cpicuB314
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G088030Watermelon (97103) v2cuwmbB468
Csa6G088030Wax gourdcuwgoB533
Csa6G088030Cucumber (Chinese Long) v2cucuB118
Csa6G088030Cucumber (Gy14) v1cgycuB490
Csa6G088030Cucurbita maxima (Rimu)cmacuB367
Csa6G088030Cucurbita maxima (Rimu)cmacuB903
Csa6G088030Cucurbita moschata (Rifu)cmocuB358
Csa6G088030Cucurbita moschata (Rifu)cmocuB889
Csa6G088030Melon (DHL92) v3.5.1cumeB442
Csa6G088030Watermelon (Charleston Gray)cuwcgB476
Csa6G088030Watermelon (97103) v1cuwmB537
Csa6G088030Cucurbita pepo (Zucchini)cpecuB142
Csa6G088030Cucurbita pepo (Zucchini)cpecuB322
Csa6G088030Bottle gourd (USVL1VR-Ls)culsiB402
Csa6G088030Cucumber (Gy14) v2cgybcuB282
Csa6G088030Melon (DHL92) v3.6.1cumedB422
Csa6G088030Silver-seed gourdcarcuB0012
Csa6G088030Silver-seed gourdcarcuB0995