Csa6G087880 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G087880
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 5850801 .. 5853611 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTCGACCTCGTTACGGGCAGAGCCAGCTGTTGAAACAGTCTTGACGCGCCACAGGCCACTGGTTTCATCGTACCTTGCTGATTGAACACACTCGTTGAATTGTGGGTTGATCTCAAAATGCTTGGCGTATGATTCAAGGTACTCAATGAACTGTCTCTTGGTTGGGTATTCAGGGAAGTCTTCTGGGAATGGGAGTTTTGGGAGCTGGCAGAATTGCTTTGGAAGGTGAAGTTTAAGTCTGTCATAGGTGCGCTTTTGCCACAGGGAGGCTATGCATTCAGCTCGTTCAAGGACTACAAAAGGTACCCCTTGTTCTCTAAGACAAGCAGCTGTAGCCAGCCCTGATGGCCCAGCCCCAACGATCACCGGACCATTAACCCAGATGCAACGTCGAGAGAAGAAGTCATCATGATCGGCAAGACGAAACAAGTTCTCCATCACTACTGAGGTAACTCAAAGACTTTGTTTTGTTTGATTGACAATTGTGGTTGTGTTTGTGTTCTTTAGGATGGATGCCAATAGGAAACAGGTAGATGTTTGGAAGTGTTTTTGTTTGTAAGAGAAGATTGTGAGTAAAGTTTGAAGGCTTTGGGAATAGGAGAGGAGAATTCTGATTTTTGGTGAGGATGAGAATGAAAGGAGGATGGAGGGGGTTTAAATAAGGAGAATTGGATGGCACTAAACGAAGAAAGAGAAAGAGGTTGAGAGAGAGATGCATGTGATGGAAGTGGGAGTCAATGAGCTTTGAAGGGTCATTCTCAAATCATAAGCTTCTGCCTACCCCTTGATTATTTTATTTTCTTATTCCCTCTTCCCCTTCCCAATATAATATTAGATCTCACTAATACATTAGTTCATACTCTTCATTAAGAATTTAATGTTAGAAAGCCTCCCACCATAAACTGTATATTTAATCTTAATCATTAATTATTCCATCGTAGGTAAATTTTCTCCCACACATGGAGAGGGTGAGTGCTAAATCTATATGGATAGATGGTTCAATTCTTTACCCTGCAATTGTTCGACCAAAACAAACTTAGACAAGAGGGTGGGCAATCTAATCCGGAGTTAAATCGGGTCGGGTCTGTAGTGACAGTAAATGGATCAGATCAAGTGTGAGAGAGAGAGAAGAGAATAAGGGAGGAATGAAAGGGAGAGATGGAGTTTTCAAAGGAAGTTGAATCAGGTGAGCCCCCAGCAGAGAAATTTAATGGCAATGATGAAGAGATAAATGGGGGGAGGGGTTATAATGCTGACTGGGACATGTAGAAAAGATCCCACGTGGAGGGAGGAAGAGGAGGGCATGGGGTGAGGGGGCCACACGTCAGCATCTTTGGACCTCAAAAAAAACCAAGCTGCAAAGGGAATTTGAAATTTTGTTTGAGTTGAAAGGCTGTTTTGTTTTATGGCTCACACCACCCATCTTGCCAACTGGTACACTTCAATATCTATGCTGATAAAACATTAACTCTATATTTTTATGTTTTTTTTTTTTTTTTTTTAAATTTTAATATCATATGAATTTTTCCTTTTCTTTTCTTTCCTCTCTGGAAAAGTCACTAATGACTAAACTTCTTCCTAGGCTCTATATTTCGGAGAAAATTATGTTCTTTGTGTACTTTTTTTAGTTTTAGAGTGTATTCCTCAGCAGTGATTTTGAGGTTAAGTTTTAGAAAAGTGTATTAAAGTGAAACACTCATCTCTAAGCACTTTTTGAAAAAAGTTATAGTTACAAGTGGACAAATTAACTATCTTTCAATTCAAAATAAAATATAATTTATATATCTCTTTGTACTTATGTTTTTTAGGTCAACAATCGCAAGAATGAAGATCAAGATATCAACTTTTGAAAAGGTAATCAATGTCTTATCGATTGAACTATACTTAAATTGATAATATTACCCAGTGAATTACATTAAATGGATACACATATCTTAAACCATGAGAACTAAAGTATCATTACCTAAAAACCTAAAAGATTTAAGCTTCTTTTTTCCTCTTCTTTTAATGTACATGCTAGGTGGCCAGAAGTGTTTGGTTGTATGTAAATCTTAAAAAGAAAGAAGAGACATAGAATGAAGCTAAAGGTACATTTAGGTAATAATGAGGTAGATTTAGACGGTGAAAGGTATGATATGAAAGTGTAAAAAGAAGGGTTATGTGGCCATTGGGACTAATATTATATATATTTGTTGAAATTACAATCTCAAACTCCTTTTCATGAAAAGTGAGATTTGGAGCCCTATTATATGGGGTTTGGCATTTTCTTTTCTTTTTTTAGAAACTCATATATAAATGTAAAGGAGTAGTAGTATTCTATCATCATTCCCAACTTAATTGCTCCTCTCACTCTCATCATCAAACCCCTCAACTTTACATACCTAACACCAACAAAAAATTATGCAACATTACATAATATGATAGAGAGAGAGAATCAATGTGTTCATATAAAAATAAAATCATTAGCTATTTAGTCAAAATTAAGTAGGGACAGGATATTCCTATATGGTAGGATGATATCATTTTTGTGCATGTTCATAGTTAATATTGACATACCTCAATTTAAATATCTTGCTCAATATATATATATATATGACTAGATATTTAAACTCACAATAATCTATTAGGAAAAGGTAGGCCAATTTACACTACATTATATTTTGATGTTTGAACTATATTAATTAAAACCATTGTTTTTAATAAACAGATGAGATTGCCTTGGAGATTATGTATTAACAACAACCTTGAGAATGTATTGGAGCAACAACAATTGGTTATGACGCACAGTCCCACATCAAGTAAGTAA

mRNA sequence

ATGTATTCGACCTCGTTACGGGCAGAGCCAGCTGTTGAAACAGTCTTGACGCGCCACAGGCCACTGGTACTCAATGAACTGTCTCTTGGTTGGGTATTCAGGGAAGTCTTCTGGGAATGGGAGTTTTGGGAGCTGGCAGAATTGCTTTGGAAGGTGAAGTTTAAGTCTGTCATAGGTGCGCTTTTGCCACAGGGAGGCTATGCATTCAGCTCGTTCAAGGACTACAAAAGATGCAACGTCGAGAGAAGAAGTCATCATGATCGGCAAGACGAAACAAGTTCTCCATCACTACTGAGGTCAACAATCGCAAGAATGAAGATCAAGATATCAACTTTTGAAAAGATGAGATTGCCTTGGAGATTATGTATTAACAACAACCTTGAGAATGTATTGGAGCAACAACAATTGGTTATGACGCACAGTCCCACATCAAGTAAGTAA

Coding sequence (CDS)

ATGTATTCGACCTCGTTACGGGCAGAGCCAGCTGTTGAAACAGTCTTGACGCGCCACAGGCCACTGGTACTCAATGAACTGTCTCTTGGTTGGGTATTCAGGGAAGTCTTCTGGGAATGGGAGTTTTGGGAGCTGGCAGAATTGCTTTGGAAGGTGAAGTTTAAGTCTGTCATAGGTGCGCTTTTGCCACAGGGAGGCTATGCATTCAGCTCGTTCAAGGACTACAAAAGATGCAACGTCGAGAGAAGAAGTCATCATGATCGGCAAGACGAAACAAGTTCTCCATCACTACTGAGGTCAACAATCGCAAGAATGAAGATCAAGATATCAACTTTTGAAAAGATGAGATTGCCTTGGAGATTATGTATTAACAACAACCTTGAGAATGTATTGGAGCAACAACAATTGGTTATGACGCACAGTCCCACATCAAGTAAGTAA

Protein sequence

MYSTSLRAEPAVETVLTRHRPLVLNELSLGWVFREVFWEWEFWELAELLWKVKFKSVIGALLPQGGYAFSSFKDYKRCNVERRSHHDRQDETSSPSLLRSTIARMKIKISTFEKMRLPWRLCINNNLENVLEQQQLVMTHSPTSSK*

Homology

[Close]

BLAST of Csa6G087880 vs. TrEMBL
Match: A0A0A0K9B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087880 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 6.8e-79
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MYSTSLRAEPAVETVLTRHRPLVLNELSLGWVFREVFWEWEFWELAELLWKVKFKSVIGA 60
           MYSTSLRAEPAVETVLTRHRPLVLNELSLGWVFREVFWEWEFWELAELLWKVKFKSVIGA
Sbjct: 1   MYSTSLRAEPAVETVLTRHRPLVLNELSLGWVFREVFWEWEFWELAELLWKVKFKSVIGA 60

Query: 61  LLPQGGYAFSSFKDYKRCNVERRSHHDRQDETSSPSLLRSTIARMKIKISTFEKMRLPWR 120
           LLPQGGYAFSSFKDYKRCNVERRSHHDRQDETSSPSLLRSTIARMKIKISTFEKMRLPWR
Sbjct: 61  LLPQGGYAFSSFKDYKRCNVERRSHHDRQDETSSPSLLRSTIARMKIKISTFEKMRLPWR 120

Query: 121 LCINNNLENVLEQQQLVMTHSPTSSK 147
           LCINNNLENVLEQQQLVMTHSPTSSK
Sbjct: 121 LCINNNLENVLEQQQLVMTHSPTSSK 146

[Close]

BLAST of Csa6G087880 vs. NCBI nr
Match: gi|700191156|gb|KGN46360.1| (hypothetical protein Csa_6G087880 [Cucumis sativus])

HSP 1 Score: 301.2 bits (770), Expect = 9.8e-79
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MYSTSLRAEPAVETVLTRHRPLVLNELSLGWVFREVFWEWEFWELAELLWKVKFKSVIGA 60
           MYSTSLRAEPAVETVLTRHRPLVLNELSLGWVFREVFWEWEFWELAELLWKVKFKSVIGA
Sbjct: 1   MYSTSLRAEPAVETVLTRHRPLVLNELSLGWVFREVFWEWEFWELAELLWKVKFKSVIGA 60

Query: 61  LLPQGGYAFSSFKDYKRCNVERRSHHDRQDETSSPSLLRSTIARMKIKISTFEKMRLPWR 120
           LLPQGGYAFSSFKDYKRCNVERRSHHDRQDETSSPSLLRSTIARMKIKISTFEKMRLPWR
Sbjct: 61  LLPQGGYAFSSFKDYKRCNVERRSHHDRQDETSSPSLLRSTIARMKIKISTFEKMRLPWR 120

Query: 121 LCINNNLENVLEQQQLVMTHSPTSSK 147
           LCINNNLENVLEQQQLVMTHSPTSSK
Sbjct: 121 LCINNNLENVLEQQQLVMTHSPTSSK 146

The following BLAST results are available for this feature:

BLAST of Csa6G087880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9B0_CUCSA	6.8e-79	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087880 PE=4 SV=1	[more]

BLAST of Csa6G087880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191156\|gb\|KGN46360.1\|	9.8e-79	100.00	hypothetical protein Csa_6G087880 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G087880.1	Csa6G087880.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G087880	Silver-seed gourd	carcuB0012
Csa6G087880	Watermelon (97103) v2	cuwmbB468
Csa6G087880	Wax gourd	cuwgoB533
Csa6G087880	Cucumber (Chinese Long) v2	cucuB118
Csa6G087880	Cucumber (Gy14) v1	cgycuB490
Csa6G087880	Cucurbita maxima (Rimu)	cmacuB367
Csa6G087880	Cucurbita maxima (Rimu)	cmacuB903
Csa6G087880	Cucurbita moschata (Rifu)	cmocuB358
Csa6G087880	Cucurbita moschata (Rifu)	cmocuB889
Csa6G087880	Melon (DHL92) v3.5.1	cumeB442
Csa6G087880	Watermelon (Charleston Gray)	cuwcgB476
Csa6G087880	Watermelon (97103) v1	cuwmB537
Csa6G087880	Cucurbita pepo (Zucchini)	cpecuB142
Csa6G087880	Cucurbita pepo (Zucchini)	cpecuB322
Csa6G087880	Bottle gourd (USVL1VR-Ls)	culsiB402
Csa6G087880	Cucumber (Gy14) v2	cgybcuB282
Csa6G087880	Melon (DHL92) v3.6.1	cumedB422