Csa6G087820 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G087820
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 5820956 .. 5823367 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGATTCTAAATGTCTTTTGGTACGTTCATTGAGCTAATGATTCCTTTAAAACATACTTGATAACAAAATTTATCTACCTATTGTATCTTTCACCTTATAACTTTTTTTTGTTTATATTCTTAAGTTATTTTTAAAACAAATTTGCTCGTACTTTTGTTTATTTAATTGTTATTTTGATTATCTTTCCAAATTGGACCCAAAATTACAATTGTATGAATTATTGGAACATTGGATAAAGACTAAATTATGAAAACATCATTCAATTTTGTACAGTTTTATATTAGTCGAGATCCAATAAAGCTGATGAAAAAAAATCCATGAGTTACATTAATTATACCATAAAACCTAAAAGAAAGAAAAAAAAAAAAAGGTTAGAATACTCTCTTACTATTGGTATTAAGTTGGCGCCCAAGTTTAGGCCTCTAGGGTTAATTTTCTTTCCTCTGCCGCCCATTCTCTCCAAGTCTCCATCTTCACCTCGCTGCCCACCTCTCATTCTCTCCATCTGTCTTGATTTTGGTTGTTATGTAGAGAGATGGATAGAAGAAATCAAGGAGAGGAATAAGAAGAAAGAAGAAGATAAGGAGGCGAAAGCCTCAAGCTTTTGTGGGTTTTTCATTTCTACGTTACTGTAGGTCTCAAACCCATTAAACACAACAGGTTCTCTTTTCTTTTTTTTTTTTTTTTTTTTTGTATTGTTGAACAAATCTCTACTCCTTCCAACATTTTGCAATTACCCTTCATTTCCATTACAATGTATGATTTTATTCACTGTTCTGATTTCTGTGTACAAGTTTTGTTCGTTCTAAACTCATCAAGGATATGATGTTGAATAAGTAAAAGGTCTGAGAAGGAAGATTGTGTTGGTAGAGACAATGTTTGAGGTTTGAGGGGAAAGGGGAATAATGGAAGAGGGCCCCTGTCCTTGTGAGAGTCATCGCATTGTGACTTTCGCAACCTCTTCTAAAGAAATTTGTTGGTAACAATAACGGGTTTGAATAAAAGGCGTGGGTTGCATTCTAACATTGGATGCTTACCTAGACTTCGCCCGACACTTGGATTTCCCTCTGCCTCAAACATTTGCTTTCTGCTTCCACTCTTTCTTCATTGATCATGACCTTCACACTGATCCTTCTTCAGTTCTTTTGCATTTTTTTGTGCTTTAGATCTACAGCGAGCTTTGAATGTTGTTGTTGGGTAGCTGTTTAGTTCATGTGGATTGAATTTTGTTGACAAGGGATTGAAATTTTTTTACTATTTTTTAGGTTTTTGAATGTTCTGTTAATATAATAATCCAAACAAGAAGATAGGTATTGTAATAACATAATAGGTCTTGAGTTTAAGTTGACGAGTTTTTTGGATATTGTTGTTAAAGAGTGATCTTTTCTCTGGAATCAAAGGAATGGTTGGATAATTTGAGTGTCTACAAGAACATTAATGACTTTTACAAGTCATCTAACTACTACTTTCAGGAACAAGACAACCTATGCTCTTTTATGTGTTGGCATTTCACATTTGCATTAATGTTTGTTTCTACATGTAAAAAGTTTACTTTGACCATCATGGGTCGGCCTAATAGTAAAAAAAGGGTCATGGGTTTCATAAAGGGCTTAGAGGAAATAAGTTTGTTCGATCAATGATGGTGAATTAGTGTCCTGCGATTGAATTGAATTGGTTTGTTGGCTACAACCCATAAGATTCAGATATTGCAAGTTTGGACTCTTTTGAACACTAACCAGCAAGGTGCAGATTCCTTTTTGGTAAAATGCAGCAAGTATTATTGCTCTAGTTTTCTTTACCATTGAAGTGAAGTGTTCGAATTAGATTCTAACTATTGAAGCTCATTTATTGTTATGTATGGGTTGGTTTCGTAGTATTTGATTGAAGTCTATAGTTGATTTTGGTTAAGAATATCCCTTACGAACAGTCTCTCAGTAGTCTCCACATATAAACATTGTTTTCATTGTGTAGGCTTCTAGGATTTTGACATTTATTTGAGGATTGGATTTTGGACTGAGAACTGTAGGTTTTCAATCAGGGTATTTTGGTAGAGTTGTGATTTTTGAAGGAAAATGAATTTTAAATCTTGATGTGGGAACTGCTTACTTCTTATAGATTTTGTATAGTTCATATTAGAATTTTCTGTTAAAAACAATATGAGCTAATTGATCTCAGTCTCCCCCGTTTCTGCAGAGCTCTAATTTGTAATGAAGAAGCTCCCACCTATCCTGAGAAAGCTTCAAACCCCTCAACCAACACCCCCTTCTCCATTGCCCAATGCAATTTTGCCCCCTTCTCCTCAAACCCCTGTGGCCCCTCTTCTCAATTTATCCTTCTCTTCTCCGCACCATTACAATCAACTCCTCCATTTCCTCAAATCCCACCTCACATTTCCCTTCACACCTAA

mRNA sequence

ATGGTCGATTCTAAATGTCTTTTGTTGGCGCCCAAGTTTAGGCCTCTAGGGTTAATTTTCTTTCCTCTGCCGCCCATTCTCTCCAAGTCTCCATCTTCACCTCGCTGCCCACCTCTCATTCTCTCCATCTGTCTTGATTTTGGTTGTTATGTAGAGAGATGGATAGAAGAAATCAAGGAGAGGAATAAGAAGAAAGAAGAAGATAAGGAGGCGAAAGCCTCAAGCTTTTGTGGGTTTTTCATTTCTACGTTACTAGCTCTAATTTGTAATGAAGAAGCTCCCACCTATCCTGAGAAAGCTTCAAACCCCTCAACCAACACCCCCTTCTCCATTGCCCAATGCAATTTTGCCCCCTTCTCCTCAAACCCCTGTGGCCCCTCTTCTCAATTTATCCTTCTCTTCTCCGCACCATTACAATCAACTCCTCCATTTCCTCAAATCCCACCTCACATTTCCCTTCACACCTAA

Coding sequence (CDS)

ATGGTCGATTCTAAATGTCTTTTGTTGGCGCCCAAGTTTAGGCCTCTAGGGTTAATTTTCTTTCCTCTGCCGCCCATTCTCTCCAAGTCTCCATCTTCACCTCGCTGCCCACCTCTCATTCTCTCCATCTGTCTTGATTTTGGTTGTTATGTAGAGAGATGGATAGAAGAAATCAAGGAGAGGAATAAGAAGAAAGAAGAAGATAAGGAGGCGAAAGCCTCAAGCTTTTGTGGGTTTTTCATTTCTACGTTACTAGCTCTAATTTGTAATGAAGAAGCTCCCACCTATCCTGAGAAAGCTTCAAACCCCTCAACCAACACCCCCTTCTCCATTGCCCAATGCAATTTTGCCCCCTTCTCCTCAAACCCCTGTGGCCCCTCTTCTCAATTTATCCTTCTCTTCTCCGCACCATTACAATCAACTCCTCCATTTCCTCAAATCCCACCTCACATTTCCCTTCACACCTAA

Protein sequence

MVDSKCLLLAPKFRPLGLIFFPLPPILSKSPSSPRCPPLILSICLDFGCYVERWIEEIKERNKKKEEDKEAKASSFCGFFISTLLALICNEEAPTYPEKASNPSTNTPFSIAQCNFAPFSSNPCGPSSQFILLFSAPLQSTPPFPQIPPHISLHT*

Homology

[Close]

BLAST of Csa6G087820 vs. TrEMBL
Match: A0A0A0KBY1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087820 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 2.8e-86
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


Query: 1   MVDSKCLLLAPKFRPLGLIFFPLPPILSKSPSSPRCPPLILSICLDFGCYVERWIEEIKE 60
           MVDSKCLLLAPKFRPLGLIFFPLPPILSKSPSSPRCPPLILSICLDFGCYVERWIEEIKE
Sbjct: 1   MVDSKCLLLAPKFRPLGLIFFPLPPILSKSPSSPRCPPLILSICLDFGCYVERWIEEIKE 60

Query: 61  RNKKKEEDKEAKASSFCGFFISTLLALICNEEAPTYPEKASNPSTNTPFSIAQCNFAPFS 120
           RNKKKEEDKEAKASSFCGFFISTLLALICNEEAPTYPEKASNPSTNTPFSIAQCNFAPFS
Sbjct: 61  RNKKKEEDKEAKASSFCGFFISTLLALICNEEAPTYPEKASNPSTNTPFSIAQCNFAPFS 120

Query: 121 SNPCGPSSQFILLFSAPLQSTPPFPQIPPHISLHT 156
           SNPCGPSSQFILLFSAPLQSTPPFPQIPPHISLHT
Sbjct: 121 SNPCGPSSQFILLFSAPLQSTPPFPQIPPHISLHT 155

[Close]

BLAST of Csa6G087820 vs. NCBI nr
Match: gi|700191150|gb|KGN46354.1| (hypothetical protein Csa_6G087820 [Cucumis sativus])

HSP 1 Score: 325.9 bits (834), Expect = 3.9e-86
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


Query: 1   MVDSKCLLLAPKFRPLGLIFFPLPPILSKSPSSPRCPPLILSICLDFGCYVERWIEEIKE 60
           MVDSKCLLLAPKFRPLGLIFFPLPPILSKSPSSPRCPPLILSICLDFGCYVERWIEEIKE
Sbjct: 1   MVDSKCLLLAPKFRPLGLIFFPLPPILSKSPSSPRCPPLILSICLDFGCYVERWIEEIKE 60

Query: 61  RNKKKEEDKEAKASSFCGFFISTLLALICNEEAPTYPEKASNPSTNTPFSIAQCNFAPFS 120
           RNKKKEEDKEAKASSFCGFFISTLLALICNEEAPTYPEKASNPSTNTPFSIAQCNFAPFS
Sbjct: 61  RNKKKEEDKEAKASSFCGFFISTLLALICNEEAPTYPEKASNPSTNTPFSIAQCNFAPFS 120

Query: 121 SNPCGPSSQFILLFSAPLQSTPPFPQIPPHISLHT 156
           SNPCGPSSQFILLFSAPLQSTPPFPQIPPHISLHT
Sbjct: 121 SNPCGPSSQFILLFSAPLQSTPPFPQIPPHISLHT 155

The following BLAST results are available for this feature:

BLAST of Csa6G087820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBY1_CUCSA	2.8e-86	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087820 PE=4 SV=1	[more]

BLAST of Csa6G087820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191150\|gb\|KGN46354.1\|	3.9e-86	100.00	hypothetical protein Csa_6G087820 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU103231	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G087820.1	Csa6G087820.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU103231	CU103231	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 51..75 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G087820	Watermelon (97103) v2	cuwmbB468
Csa6G087820	Wax gourd	cuwgoB533
Csa6G087820	Cucumber (Gy14) v1	cgycuB490
Csa6G087820	Cucurbita maxima (Rimu)	cmacuB908
Csa6G087820	Melon (DHL92) v3.5.1	cumeB442
Csa6G087820	Watermelon (Charleston Gray)	cuwcgB476
Csa6G087820	Watermelon (97103) v1	cuwmB537
Csa6G087820	Cucurbita pepo (Zucchini)	cpecuB327
Csa6G087820	Bottle gourd (USVL1VR-Ls)	culsiB402
Csa6G087820	Cucumber (Gy14) v2	cgybcuB282
Csa6G087820	Melon (DHL92) v3.6.1	cumedB422