Csa6G087160 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G087160
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 5703089 .. 5704555 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAAGGGTGTGATGCAAATAATGATATAATGTTATTTTTAATCATTAAATAATTTCATATTGAAAAAATTTATTTTATATTGAATTAATAAAATATTTCTAATTAATGTTCATAATAAATTTATATCCTACTAATTAATAGACCAAATAAGTAAGTTGACATCTATAATTAATTTAATATAATATAAATAAGAAAATTATTTAAATTTAATTTAAAAAATTATATATAATTAATAATTATTATAAGACTATAAATATCTTAAAAATCTACCAAAACTTAATAAAAAAAAAAAGGGAGATTTGTGAAAGTATTTTATCTTAATCTTTCAAAAATAAAATATAAAATAAAGAAAGAAAGACGTTGTTAAACCCTAACCCCTTTATTTTCCTCTCACACTCACTCTCACGTGCTCACCTTCTTCCCGCCGGCGCCTCTCCCCTTTCTGTTTCAGCACCTCAGTGTCGCCGTCGCCTTTCTCCGATTCAGTGCTGCCGTAGCCTGACTCCGCTCAGATTGCACCAATTTTCTACTCTCTTCTTGTTACTGGTATTCTCGAACTCTCCAACTATTTCTTCCTTCTCTATTGAAAAATCAATTTAGAACTTTGTGTAACGAAAGAATGGAGGACTTGTATTGAATTTGATTTTTTTTTTTTTGTTGATTAAAATCACCGAATAGCAATGGAAATAGGAAAAGATAAAAAAACCATCAGCCTCGCGTCAAAATGGGATTTTTCGAAGTGATGTATGCTGTTTTATGCCTTTTAGTTTCTCGCATTTGTCTGTCAATTGAGGCTTGGGTAATCTGTACATCTCTTCGGTCTCTCCCGAAAATTGTGTTGTTTCCAATCTCCTAAATCATCCAAAGCACCACCCACCATGAGTTTTCCAGCATTTCTCTTCTTAACCATTAAGTATTATGTTTAGCAATACTTGGTCATACCAATTTATGATTTGTAAAATGTTCTTAAGTAAAATTGAGGCTCTTGTATCATACCCTTTTGAGGCTTATGCCTCGCCTTCAAGAAGCCAGCCTCAAAACCACCTTTAGCCTTTAAAATATTGAGTACTTCTATTACATTACTGGCATTTTAAAAAAAATAAGAAGCCTTTGATATTCATTTTATTTTAATAATCAATAAGAAGCCTTGCTTTATGTTGAAAAAACCCCACGACATGAGGGTGTCAGAAGCTACTTTTGCTTTGCATTGAAATCGTAGTGTTGATTATAGATAATAGTAGACAATTTCCATTTTTTAACGCTCAATTGACTTTCTGTGGAACATGATTCTGGATACTACTACAACCTATGTTCTATTCTACTCTTTGGATGATAAAACTTTTGAAATTTGATGCCGTTTATTTTTGTTATAGGCTTACAGCCAGCCAAAAGTTTGTTGGAGGTGTCTTATCCTCTTCATTGAATTGAAGTTAGCTAATTATGGGCAAGAGAAAGAGTTATAA

mRNA sequence

ATGTTCAAGGAAAGAAAGACGTTGTTAAACCCTAACCCCTTTATTTTCCTCTCACACTCACTCTCACGTGCTCACCTTCTTCCCGCCGGCGCCTCTCCCCTTTCTGTTTCAGCACCTCAGTGTCGCCGTCGCCTTTCTCCGATTCAGTGCTGCCGTAGCCTGACTCCGCTCAGATTGCACCAATTTTCTACTCTCTTCTTGTTACTGGCTTACAGCCAGCCAAAAGTTTGTTGGAGGTGTCTTATCCTCTTCATTGAATTGAAGTTAGCTAATTATGGGCAAGAGAAAGAGTTATAA

Coding sequence (CDS)

ATGTTCAAGGAAAGAAAGACGTTGTTAAACCCTAACCCCTTTATTTTCCTCTCACACTCACTCTCACGTGCTCACCTTCTTCCCGCCGGCGCCTCTCCCCTTTCTGTTTCAGCACCTCAGTGTCGCCGTCGCCTTTCTCCGATTCAGTGCTGCCGTAGCCTGACTCCGCTCAGATTGCACCAATTTTCTACTCTCTTCTTGTTACTGGCTTACAGCCAGCCAAAAGTTTGTTGGAGGTGTCTTATCCTCTTCATTGAATTGAAGTTAGCTAATTATGGGCAAGAGAAAGAGTTATAA

Protein sequence

MFKERKTLLNPNPFIFLSHSLSRAHLLPAGASPLSVSAPQCRRRLSPIQCCRSLTPLRLHQFSTLFLLLAYSQPKVCWRCLILFIELKLANYGQEKEL*
Homology
[Close]
BLAST of Csa6G087160 vs. TrEMBL
Match: A0A0A0KEY5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087160 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.2e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MFKERKTLLNPNPFIFLSHSLSRAHLLPAGASPLSVSAPQCRRRLSPIQCCRSLTPLRLH 60
          MFKERKTLLNPNPFIFLSHSLSRAHLLPAGASPLSVSAPQCRRRLSPIQCCRSLTPLRLH
Sbjct: 1  MFKERKTLLNPNPFIFLSHSLSRAHLLPAGASPLSVSAPQCRRRLSPIQCCRSLTPLRLH 60

Query: 61 QFSTLFLLLAYSQPKVCWRCLILFIELKLANYGQEKEL 99
          QFSTLFLLLAYSQPKVCWRCLILFIELKLANYGQEKEL
Sbjct: 61 QFSTLFLLLAYSQPKVCWRCLILFIELKLANYGQEKEL 98

[Close]
BLAST of Csa6G087160 vs. NCBI nr
Match: gi|700191132|gb|KGN46336.1| (hypothetical protein Csa_6G087160 [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 3.2e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MFKERKTLLNPNPFIFLSHSLSRAHLLPAGASPLSVSAPQCRRRLSPIQCCRSLTPLRLH 60
          MFKERKTLLNPNPFIFLSHSLSRAHLLPAGASPLSVSAPQCRRRLSPIQCCRSLTPLRLH
Sbjct: 1  MFKERKTLLNPNPFIFLSHSLSRAHLLPAGASPLSVSAPQCRRRLSPIQCCRSLTPLRLH 60

Query: 61 QFSTLFLLLAYSQPKVCWRCLILFIELKLANYGQEKEL 99
          QFSTLFLLLAYSQPKVCWRCLILFIELKLANYGQEKEL
Sbjct: 61 QFSTLFLLLAYSQPKVCWRCLILFIELKLANYGQEKEL 98

The following BLAST results are available for this feature:
BLAST of Csa6G087160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEY5_CUCSA2.2e-49100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087160 PE=4 SV=1[more]
BLAST of Csa6G087160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191132|gb|KGN46336.1|3.2e-49100.00hypothetical protein Csa_6G087160 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU113069cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G087160.1Csa6G087160.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU113069CU113069transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G087160Silver-seed gourdcarcuB0091
Csa6G087160Silver-seed gourdcarcuB0786
Csa6G087160Watermelon (97103) v2cuwmbB468
Csa6G087160Wax gourdcuwgoB544
Csa6G087160Cucumber (Gy14) v1cgycuB490
Csa6G087160Cucurbita maxima (Rimu)cmacuB374
Csa6G087160Cucurbita maxima (Rimu)cmacuB908
Csa6G087160Cucurbita moschata (Rifu)cmocuB363
Csa6G087160Cucurbita moschata (Rifu)cmocuB894
Csa6G087160Melon (DHL92) v3.5.1cumeB442
Csa6G087160Watermelon (Charleston Gray)cuwcgB476
Csa6G087160Watermelon (97103) v1cuwmB537
Csa6G087160Cucurbita pepo (Zucchini)cpecuB327
Csa6G087160Bottle gourd (USVL1VR-Ls)culsiB402
Csa6G087160Cucumber (Gy14) v2cgybcuB282
Csa6G087160Melon (DHL92) v3.6.1cumedB422