Csa6G081500 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G081500
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	60S ribosomal protein L38, putative; contains IPR002675 (Ribosomal protein L38e)
Location	Chr6 : 5551992 .. 5553940 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAAAATTAGGGTTTTGAGCCTCCACAATCAGCAACTAAGCGGCAGTCTCAGTTCTGCCACCAAAATGGTACCTCTCAAGTTCTAATCCCTAATCGAATTGCTTTTTTATTGTTCATATTCTTAATGCATTGATGACTCAACCTACTTTTGATTTCTGATGTTTGCTGTCGCCGATTTTTCATCTTCCCTGAATTAGCTTCTGTTCTGTCTATTGAGCGTTGTGACGGTCCATATCCTCATCTAATTTTCTATTCACGTTGAAATTCGATGCGTTTCTTGAGTTTTTTTTTTTTTGTTAAGGTTTATGCGGATTCAAGTAACTTTTATGTACATATCTCCATGCCGTTTGCATATTTTTTGCTTTGGATTATTTTGTAATCAAATTCGGTCTCTTTGTTCCATTTTTGAATTTGCAGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTTGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCGGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAGATTTACTTTCTTAATAACCAACACTACAATGTGCTTAGAGTATGATATATAGGAAATGGCTGTTACTGTAGCTAGGTAAAGTGCTCTTCAATGGTTGGATTGATTACAACTGTTTCATAATTTGTACGCGACGAGTACAAATTTCCATTGAAGAGGCTAATATCGAACACTGATTTTGGCTCAAATGATCCTTAATCTCCTTGAACATACCTTTTCTTTTACTAACAATCCTTTATCTTCTACAAATCTCCTGCTTCCTTACATTGACTTCTTTACAAAAGTTTTTGTTGTTCTTTAGGACTCCCCGAATATTGTTCTTCTTAACTACAAGGATCAATCGCTTACAACCCCCTTTAGATACGCGCAAAGATTCTTTGGCAGGCTTGTTTTTTCCATTCTTTAGGGAATTTAACTTGACTCTTGACAGAAATTTTAGACCTTTTTTGAAGTTGAGCAATCTGAGTAGGCCATTAGCATCTTGGGGCATCAATCGATTAACTAACCCTTTATTATTTTGGATTGGTGTTTATTCTTGGGGCTTTTTAGATTCCTTTTCTTGAACTACTATTTTGTGTGCCCTTCTTGCACGCATGGTTTCTTGTTAAGGTAAATATTAGAATACCATTTTGGTCTCGTATTTTAGGACTTACATTTAATATTGTCTCAATCTATTCTTCGCATTTTTAGTAAGTTTTTGTATTTTAGTCTATTATTTTAGTTTATGATCAACTTTTTCATAATTGTAAGATCTCTAGCTCTACTATCATAACATTTGACATTGAATTTTCTTCAATATAAATTATTGTAATCATTTTATGAAGTTCTATATTAAAAAAAAAAAAAAGTTATCCTCTACCTAACATAAAATTACTAATTCGATTTCAAAATTTATGAAAGGTGACTAAAACCAAACCTTTGATAGTTAATCCCAAAATGTTATTTTAACTTTAATCAAAATTGGTGCTAAGCTGAGGAAGAATTTGGTCTGAATATTGACTGACATTTATGTTTGCACTTTGACAGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGTTGAAGTGTCGAAGGATCATAAGGATGAGAATTAGATTTTTTGTATGATGTTTTTTCCCCCTAACTATTTAGAATATATTTAAATTGGATTTGAGCTTGTAGTAATCCATATTTATCTTCGGTTTTGAGTGGATTGATTGGAATTTAGAATTCTTATGCTGGGTTTATTACATGGGTTGATGTTTCACTAAAATCATGGCTACCCAAGCTTTTATTTGAAAATTATCAAGATTTTGATTGATTTGGCTAGGCCTTGAGTAACCTTATTGCAAATCTCTTATCCTCCTC

mRNA sequence

ATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTTGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCGGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTTGAGTGTGCAAGATCTGTGA

Coding sequence (CDS)

ATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTTGTGAAGTTCAAAGTTCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCGGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTTGAGTGTGCAAGATCTGTGA

Protein sequence

MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL*

Homology

[Close]

BLAST of Csa6G081500 vs. Swiss-Prot
Match: RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.2e-31
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Csa6G081500 vs. Swiss-Prot
Match: RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-29
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Csa6G081500 vs. Swiss-Prot
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.1e-26
Identity = 57/69 (82.61%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGL+V++L
Sbjct: 61 PPGLAVKEL 69

[Close]

BLAST of Csa6G081500 vs. Swiss-Prot
Match: RL38_MOUSE (60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=1 SV=3)

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-24
Identity = 54/69 (78.26%), Postives = 62/69 (89.86%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGL+V+DL
Sbjct: 61 PPGLAVKDL 69

[Close]

BLAST of Csa6G081500 vs. Swiss-Prot
Match: RL38_BOVIN (60S ribosomal protein L38 OS=Bos taurus GN=RPL38 PE=3 SV=4)

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-24
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGL+V++L
Sbjct: 61 PPGLAVKEL 69

[Close]

BLAST of Csa6G081500 vs. TrEMBL
Match: A0A068U8M1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018662001 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 36  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 95

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 96  PPGLSVQDL 104

[Close]

BLAST of Csa6G081500 vs. TrEMBL
Match: D7SPL7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00930 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 59  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 118

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 119 PPGLSVQDL 127

[Close]

BLAST of Csa6G081500 vs. TrEMBL
Match: A0A0A0KBT2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G081500 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Csa6G081500 vs. TrEMBL
Match: A0A0J8CRR4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g057800 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Csa6G081500 vs. TrEMBL
Match: A0A058ZXA9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00006 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Csa6G081500 vs. TAIR10
Match: AT2G43460.1 (AT2G43460.1 Ribosomal L38e protein family)

HSP 1 Score: 136.3 bits (342), Expect = 7.0e-33
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Csa6G081500 vs. TAIR10
Match: AT3G59540.1 (AT3G59540.1 Ribosomal L38e protein family)

HSP 1 Score: 136.3 bits (342), Expect = 7.0e-33
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Csa6G081500 vs. NCBI nr
Match: gi|629123314|gb|KCW87739.1| (hypothetical protein EUGRSUZ_A00108, partial [Eucalyptus grandis])

HSP 1 Score: 139.4 bits (350), Expect = 2.4e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 32  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 91

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 92  PPGLSVQDL 100

[Close]

BLAST of Csa6G081500 vs. NCBI nr
Match: gi|297735234|emb|CBI17596.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 139.4 bits (350), Expect = 2.4e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 59  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 118

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 119 PPGLSVQDL 127

[Close]

BLAST of Csa6G081500 vs. NCBI nr
Match: gi|661878012|emb|CDP18171.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 139.4 bits (350), Expect = 2.4e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 36  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 95

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 96  PPGLSVQDL 104

[Close]

BLAST of Csa6G081500 vs. NCBI nr
Match: gi|359476741|ref|XP_003631881.1| (PREDICTED: 60S ribosomal protein L38 [Vitis vinifera])

HSP 1 Score: 139.4 bits (350), Expect = 2.4e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Csa6G081500 vs. NCBI nr
Match: gi|661891717|emb|CDP04642.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 139.4 bits (350), Expect = 2.4e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 36  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 95

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 96  PPGLSVQDL 104

The following BLAST results are available for this feature:

BLAST of Csa6G081500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL38_ARATH	1.2e-31	95.65	60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1	[more]
RL38_SOLLC	1.5e-29	91.30	60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1	[more]
RL38_BRABE	2.1e-26	82.61	60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1	[more]
RL38_MOUSE	1.1e-24	78.26	60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=1 SV=3	[more]
RL38_BOVIN	3.3e-24	76.81	60S ribosomal protein L38 OS=Bos taurus GN=RPL38 PE=3 SV=4	[more]

BLAST of Csa6G081500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A068U8M1_COFCA	1.6e-30	100.00	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018662001 PE=3 SV=1	[more]
D7SPL7_VITVI	1.6e-30	100.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00930 PE=3 SV=...	[more]
A0A0A0KBT2_CUCSA	1.6e-30	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G081500 PE=3 SV=1	[more]
A0A0J8CRR4_BETVU	1.6e-30	100.00	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g057800 PE=3 S...	[more]
A0A058ZXA9_EUCGR	1.6e-30	100.00	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00006 PE=3 SV=1	[more]

BLAST of Csa6G081500 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43460.1	7.0e-33	95.65	Ribosomal L38e protein family	[more]
AT3G59540.1	7.0e-33	95.65	Ribosomal L38e protein family	[more]

BLAST of Csa6G081500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|629123314\|gb\|KCW87739.1\|	2.4e-30	100.00	hypothetical protein EUGRSUZ_A00108, partial [Eucalyptus grandis]	[more]
gi\|297735234\|emb\|CBI17596.3\|	2.4e-30	100.00	unnamed protein product [Vitis vinifera]	[more]
gi\|661878012\|emb\|CDP18171.1\|	2.4e-30	100.00	unnamed protein product [Coffea canephora]	[more]
gi\|359476741\|ref\|XP_003631881.1\|	2.4e-30	100.00	PREDICTED: 60S ribosomal protein L38 [Vitis vinifera]	[more]
gi\|661891717\|emb\|CDP04642.1\|	2.4e-30	100.00	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002675	Ribosomal_L38e

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU088045	cucumber EST collection version 3.0	transcribed_cluster
CU088171	cucumber EST collection version 3.0	transcribed_cluster
CU089252	cucumber EST collection version 3.0	transcribed_cluster
CU099194	cucumber EST collection version 3.0	transcribed_cluster
CU129560	cucumber EST collection version 3.0	transcribed_cluster
CU131946	cucumber EST collection version 3.0	transcribed_cluster
CU149143	cucumber EST collection version 3.0	transcribed_cluster
CU150253	cucumber EST collection version 3.0	transcribed_cluster
CU152793	cucumber EST collection version 3.0	transcribed_cluster
CU154291	cucumber EST collection version 3.0	transcribed_cluster
CU159873	cucumber EST collection version 3.0	transcribed_cluster
CU161735	cucumber EST collection version 3.0	transcribed_cluster
CU170011	cucumber EST collection version 3.0	transcribed_cluster
CU172302	cucumber EST collection version 3.0	transcribed_cluster
CU174091	cucumber EST collection version 3.0	transcribed_cluster
CU177025	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G081500.1	Csa6G081500.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU170011	CU170011	transcribed_cluster
CU161735	CU161735	transcribed_cluster
CU089252	CU089252	transcribed_cluster
CU088045	CU088045	transcribed_cluster
CU131946	CU131946	transcribed_cluster
CU172302	CU172302	transcribed_cluster
CU159873	CU159873	transcribed_cluster
CU088171	CU088171	transcribed_cluster
CU149143	CU149143	transcribed_cluster
CU150253	CU150253	transcribed_cluster
CU099194	CU099194	transcribed_cluster
CU129560	CU129560	transcribed_cluster
CU152793	CU152793	transcribed_cluster
CU177025	CU177025	transcribed_cluster
CU154291	CU154291	transcribed_cluster
CU174091	CU174091	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002675	Ribosomal protein L38e	PRODOM	PD010361		coord: 1..69 score: 3.0
IPR002675	Ribosomal protein L38e	PANTHER	PTHR10965	60S RIBOSOMAL PROTEIN L38	coord: 2..69 score: 2.4
IPR002675	Ribosomal protein L38e	PFAM	PF01781	Ribosomal_L38e	coord: 2..68 score: 6.3
None	No IPR available	PANTHER	PTHR10965:SF3	SUBFAMILY NOT NAMED	coord: 2..69 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G081500	Cucumber (Gy14) v1	cgycuB511
Csa6G081500	Cucurbita maxima (Rimu)	cmacuB374
Csa6G081500	Cucurbita maxima (Rimu)	cmacuB908
Csa6G081500	Cucurbita moschata (Rifu)	cmocuB363
Csa6G081500	Cucurbita moschata (Rifu)	cmocuB894
Csa6G081500	Melon (DHL92) v3.5.1	cumeB442
Csa6G081500	Watermelon (Charleston Gray)	cuwcgB476
Csa6G081500	Watermelon (97103) v1	cuwmB537
Csa6G081500	Cucurbita pepo (Zucchini)	cpecuB018
Csa6G081500	Cucurbita pepo (Zucchini)	cpecuB327
Csa6G081500	Bottle gourd (USVL1VR-Ls)	culsiB402
Csa6G081500	Cucumber (Gy14) v2	cgybcuB282
Csa6G081500	Melon (DHL92) v3.6.1	cumedB422
Csa6G081500	Silver-seed gourd	carcuB0091
Csa6G081500	Silver-seed gourd	carcuB0786
Csa6G081500	Watermelon (97103) v2	cuwmbB468
Csa6G081500	Wax gourd	cuwgoB542
Csa6G081500	Wax gourd	cuwgoB544