Csa6G078640 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G078640
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 5323283 .. 5323592 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAATGAATGATCAGCGAGATCATAGGGTGGGAGGTAAGAGACTGATCAGTCCCGGGACCTTATCTTTCGGCAGTGGAGGAAGTCCTTCCGGTTTTAGCTCTCTTGAATATATCATTCTTGAGTAAGGCCTACATAAAGGCTGATTTCTCTTTTTAGTTACGTAGCTGATTTCTCTTTTTAGTTACGTAATCAAAGGAAAACTCGTTTTAACCCATTTGCCTCAGACGATCGAACAAGCGCAACTTCAGCGTAAACAAAACAGCATCAGCAGCCGGAAGAACAAGAGCAACTGCCCCTTCAACTTAG

mRNA sequence

ATGAGAATGAATGATCAGCGAGATCATAGGGTGGGAGGTAAGAGACTGATCAGTCCCGGGACCTTATCTTTCGGCAGTGGAGGAAGTCCTTCCGGTTTTAGCTCTCTTGAATATATCATTCTTGAACGATCGAACAAGCGCAACTTCAGCGTAAACAAAACAGCATCAGCAGCCGGAAGAACAAGAGCAACTGCCCCTTCAACTTAG

Coding sequence (CDS)

ATGAGAATGAATGATCAGCGAGATCATAGGGTGGGAGGTAAGAGACTGATCAGTCCCGGGACCTTATCTTTCGGCAGTGGAGGAAGTCCTTCCGGTTTTAGCTCTCTTGAATATATCATTCTTGAACGATCGAACAAGCGCAACTTCAGCGTAAACAAAACAGCATCAGCAGCCGGAAGAACAAGAGCAACTGCCCCTTCAACTTAG

Protein sequence

MRMNDQRDHRVGGKRLISPGTLSFGSGGSPSGFSSLEYIILERSNKRNFSVNKTASAAGRTRATAPST*
Homology
[Close]
BLAST of Csa6G078640 vs. TrEMBL
Match: A0A0A0KBP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078640 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.0e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MRMNDQRDHRVGGKRLISPGTLSFGSGGSPSGFSSLEYIILERSNKRNFSVNKTASAAGR 60
          MRMNDQRDHRVGGKRLISPGTLSFGSGGSPSGFSSLEYIILERSNKRNFSVNKTASAAGR
Sbjct: 1  MRMNDQRDHRVGGKRLISPGTLSFGSGGSPSGFSSLEYIILERSNKRNFSVNKTASAAGR 60

Query: 61 TRATAPST 69
          TRATAPST
Sbjct: 61 TRATAPST 68

[Close]
BLAST of Csa6G078640 vs. NCBI nr
Match: gi|700191065|gb|KGN46269.1| (hypothetical protein Csa_6G078640 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.5e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MRMNDQRDHRVGGKRLISPGTLSFGSGGSPSGFSSLEYIILERSNKRNFSVNKTASAAGR 60
          MRMNDQRDHRVGGKRLISPGTLSFGSGGSPSGFSSLEYIILERSNKRNFSVNKTASAAGR
Sbjct: 1  MRMNDQRDHRVGGKRLISPGTLSFGSGGSPSGFSSLEYIILERSNKRNFSVNKTASAAGR 60

Query: 61 TRATAPST 69
          TRATAPST
Sbjct: 61 TRATAPST 68

The following BLAST results are available for this feature:
BLAST of Csa6G078640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBP0_CUCSA1.0e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078640 PE=4 SV=1[more]
BLAST of Csa6G078640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191065|gb|KGN46269.1|1.5e-29100.00hypothetical protein Csa_6G078640 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0007023 post-chaperonin tubulin folding pathway
biological_process GO:0007021 tubulin complex assembly
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0048487 beta-tubulin binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU127558cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G078640.1Csa6G078640.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU127558CU127558transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G078640Wax gourdcuwgoB544
Csa6G078640Wax gourdcuwgoB555
Csa6G078640Cucumber (Chinese Long) v2cucuB111
Csa6G078640Cucumber (Gy14) v1cgycuB374
Csa6G078640Cucumber (Gy14) v1cgycuB511
Csa6G078640Cucurbita maxima (Rimu)cmacuB269
Csa6G078640Cucurbita maxima (Rimu)cmacuB369
Csa6G078640Cucurbita maxima (Rimu)cmacuB841
Csa6G078640Cucurbita maxima (Rimu)cmacuB906
Csa6G078640Cucurbita moschata (Rifu)cmocuB257
Csa6G078640Cucurbita moschata (Rifu)cmocuB359
Csa6G078640Cucurbita moschata (Rifu)cmocuB829
Csa6G078640Cucurbita moschata (Rifu)cmocuB892
Csa6G078640Melon (DHL92) v3.5.1cumeB442
Csa6G078640Melon (DHL92) v3.5.1cumeB494
Csa6G078640Watermelon (Charleston Gray)cuwcgB470
Csa6G078640Watermelon (Charleston Gray)cuwcgB476
Csa6G078640Watermelon (97103) v1cuwmB493
Csa6G078640Watermelon (97103) v1cuwmB537
Csa6G078640Cucurbita pepo (Zucchini)cpecuB143
Csa6G078640Cucurbita pepo (Zucchini)cpecuB317
Csa6G078640Cucurbita pepo (Zucchini)cpecuB629
Csa6G078640Cucurbita pepo (Zucchini)cpecuB877
Csa6G078640Bottle gourd (USVL1VR-Ls)culsiB402
Csa6G078640Bottle gourd (USVL1VR-Ls)culsiB462
Csa6G078640Cucumber (Gy14) v2cgybcuB138
Csa6G078640Cucumber (Gy14) v2cgybcuB282
Csa6G078640Melon (DHL92) v3.6.1cumedB422
Csa6G078640Melon (DHL92) v3.6.1cumedB474
Csa6G078640Silver-seed gourdcarcuB0259
Csa6G078640Silver-seed gourdcarcuB0645
Csa6G078640Silver-seed gourdcarcuB0976
Csa6G078640Silver-seed gourdcarcuB1095
Csa6G078640Silver-seed gourdcarcuB1096
Csa6G078640Watermelon (97103) v2cuwmbB460
Csa6G078640Watermelon (97103) v2cuwmbB468