Csa6G074540 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G074540
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 4960159 .. 4960560 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGAGAAAGGTAGAGATGGAAAGAAAAAGAGCCTCGGAGTTTGCAATAAGAAAGTAACACAAAGTTTATCTATTAAACACCTTATTGTTGCTGAATTGAAGAAAGAGAGATCGGGATTTGATTGTATTCGTGGGAAAGTAGAAAGCGTCAGCGATTCGTTGTCTTTCCTTCTTCTCCTCCAAAATGGCGCATGGTTGGTTGTTAGTGACGACGTTAACCCCGCGTTTGCTTTGCCTATCCAAATTGCCTTTCTTCCTATGGACGATGGCGATGCTCATAATTTCCTTAATCCTGATTGTGACCGTTTGATTATCATACAAGAATTTGGTGGCACACCTTCCAATGACCTCCTCATCATCGATGTTTTCTTTAGTCCAAATCCCAACTTTGTTTGGTAG

mRNA sequence

ATGATAGAGAAAGGTAGAGATGGAAAGAAAAAGAGCCTCGGAGTTTGCAATAAGAAAGTAACACAAAGTTTATCTATTAAACACCTTATTGTTGCTGAATTGAAGAAAGAGAGATCGGGATTTGATTGTATTCGTGGGAAAGTAGAAAGCGTCAGCGATTCGTTGTCTTTCCTTCTTCTCCTCCAAAATGGCGCATGGTTGGTTGTTAGTGACGACGTTAACCCCGCGTTTGCTTTGCCTATCCAAATTGCCTTTCTTCCTATGGACGATGGCGATGCTCATAATTTCCTTAATCCTGATTGTGACCGTTTGATTATCATACAAGAATTTGGTGGCACACCTTCCAATGACCTCCTCATCATCGATGTTTTCTTTAGTCCAAATCCCAACTTTGTTTGGTAG

Coding sequence (CDS)

ATGATAGAGAAAGGTAGAGATGGAAAGAAAAAGAGCCTCGGAGTTTGCAATAAGAAAGTAACACAAAGTTTATCTATTAAACACCTTATTGTTGCTGAATTGAAGAAAGAGAGATCGGGATTTGATTGTATTCGTGGGAAAGTAGAAAGCGTCAGCGATTCGTTGTCTTTCCTTCTTCTCCTCCAAAATGGCGCATGGTTGGTTGTTAGTGACGACGTTAACCCCGCGTTTGCTTTGCCTATCCAAATTGCCTTTCTTCCTATGGACGATGGCGATGCTCATAATTTCCTTAATCCTGATTGTGACCGTTTGATTATCATACAAGAATTTGGTGGCACACCTTCCAATGACCTCCTCATCATCGATGTTTTCTTTAGTCCAAATCCCAACTTTGTTTGGTAG

Protein sequence

MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLLLQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLIIDVFFSPNPNFVW*
Homology
[Close]
BLAST of Csa6G074540 vs. TrEMBL
Match: A0A0A0KEK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G074540 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 5.3e-70
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1 

Query: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60
           MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL
Sbjct: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60

Query: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120
           LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI
Sbjct: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120

Query: 121 IDVFFSPNPNFVW 134
           IDVFFSPNPNFVW
Sbjct: 121 IDVFFSPNPNFVW 133

[Close]
BLAST of Csa6G074540 vs. NCBI nr
Match: gi|700190997|gb|KGN46201.1| (hypothetical protein Csa_6G074540 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 7.6e-70
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1 

Query: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60
           MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL
Sbjct: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60

Query: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120
           LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI
Sbjct: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120

Query: 121 IDVFFSPNPNFVW 134
           IDVFFSPNPNFVW
Sbjct: 121 IDVFFSPNPNFVW 133

The following BLAST results are available for this feature:
BLAST of Csa6G074540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEK2_CUCSA5.3e-70100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G074540 PE=4 SV=1[more]
BLAST of Csa6G074540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190997|gb|KGN46201.1|7.6e-70100.00hypothetical protein Csa_6G074540 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016559 peroxisome fission
cellular_component GO:0005575 cellular_component
cellular_component GO:0005779 integral component of peroxisomal membrane
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU091438cucumber EST collection version 3.0transcribed_cluster
CU105324cucumber EST collection version 3.0transcribed_cluster
CU124583cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G074540.1Csa6G074540.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU105324CU105324transcribed_cluster
CU124583CU124583transcribed_cluster
CU091438CU091438transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G074540CSPI06G05500Wild cucumber (PI 183967)cpicuB314
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G074540Watermelon (97103) v2cuwmbB460
Csa6G074540Watermelon (97103) v2cuwmbB468
Csa6G074540Wax gourdcuwgoB649
Csa6G074540Cucumber (Chinese Long) v2cucuB111
Csa6G074540Cucumber (Chinese Long) v2cucuB125
Csa6G074540Cucumber (Gy14) v1cgycuB372
Csa6G074540Cucumber (Gy14) v1cgycuB374
Csa6G074540Cucumber (Gy14) v1cgycuB511
Csa6G074540Cucurbita maxima (Rimu)cmacuB269
Csa6G074540Cucurbita maxima (Rimu)cmacuB346
Csa6G074540Cucurbita maxima (Rimu)cmacuB382
Csa6G074540Cucurbita maxima (Rimu)cmacuB841
Csa6G074540Cucurbita maxima (Rimu)cmacuB895
Csa6G074540Cucurbita moschata (Rifu)cmocuB257
Csa6G074540Cucurbita moschata (Rifu)cmocuB336
Csa6G074540Cucurbita moschata (Rifu)cmocuB372
Csa6G074540Cucurbita moschata (Rifu)cmocuB829
Csa6G074540Cucurbita moschata (Rifu)cmocuB880
Csa6G074540Melon (DHL92) v3.5.1cumeB442
Csa6G074540Melon (DHL92) v3.5.1cumeB494
Csa6G074540Melon (DHL92) v3.5.1cumeB498
Csa6G074540Watermelon (Charleston Gray)cuwcgB470
Csa6G074540Watermelon (Charleston Gray)cuwcgB475
Csa6G074540Watermelon (Charleston Gray)cuwcgB476
Csa6G074540Watermelon (97103) v1cuwmB493
Csa6G074540Watermelon (97103) v1cuwmB498
Csa6G074540Watermelon (97103) v1cuwmB537
Csa6G074540Cucurbita pepo (Zucchini)cpecuB155
Csa6G074540Cucurbita pepo (Zucchini)cpecuB323
Csa6G074540Cucurbita pepo (Zucchini)cpecuB877
Csa6G074540Bottle gourd (USVL1VR-Ls)culsiB402
Csa6G074540Bottle gourd (USVL1VR-Ls)culsiB461
Csa6G074540Bottle gourd (USVL1VR-Ls)culsiB462
Csa6G074540Cucumber (Gy14) v2cgybcuB138
Csa6G074540Cucumber (Gy14) v2cgybcuB282
Csa6G074540Melon (DHL92) v3.6.1cumedB422
Csa6G074540Melon (DHL92) v3.6.1cumedB474
Csa6G074540Melon (DHL92) v3.6.1cumedB478
Csa6G074540Silver-seed gourdcarcuB0258
Csa6G074540Silver-seed gourdcarcuB0645
Csa6G074540Silver-seed gourdcarcuB1096