Csa6G058730 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G058730
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 4593097 .. 4593378 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACTGTTCTCAGCATGCGACCAGCAATCACTGTAAGCTCCGTCAACCTTTCTCCTCGGTTGTCGCCGCCACTGCCACCTCTACCAGCACGAATCTCAGGGGAAGCTCTTGTGAATCGGTTCGACTGTGTAAAAGTTAGGTCCAAGCTTCATGTTGGTTCTTTAGGCAAAAATGGAGATGGTGAATTTAAATTACCATTATTATCGAAGCTACTTCTTATGCCAAGACTTCCTTGGCCAAGACGATACGCTCCTAAATCACCACCGCCTCCATTCTAG

mRNA sequence

ATGTCCACTGTTCTCAGCATGCGACCAGCAATCACTGTAAGCTCCGTCAACCTTTCTCCTCGGTTGTCGCCGCCACTGCCACCTCTACCAGCACGAATCTCAGGGGAAGCTCTTGTGAATCGGTTCGACTGTGTAAAAGTTAGGTCCAAGCTTCATGTTGGTTCTTTAGGCAAAAATGGAGATGGTGAATTTAAATTACCATTATTATCGAAGCTACTTCTTATGCCAAGACTTCCTTGGCCAAGACGATACGCTCCTAAATCACCACCGCCTCCATTCTAG

Coding sequence (CDS)

ATGTCCACTGTTCTCAGCATGCGACCAGCAATCACTGTAAGCTCCGTCAACCTTTCTCCTCGGTTGTCGCCGCCACTGCCACCTCTACCAGCACGAATCTCAGGGGAAGCTCTTGTGAATCGGTTCGACTGTGTAAAAGTTAGGTCCAAGCTTCATGTTGGTTCTTTAGGCAAAAATGGAGATGGTGAATTTAAATTACCATTATTATCGAAGCTACTTCTTATGCCAAGACTTCCTTGGCCAAGACGATACGCTCCTAAATCACCACCGCCTCCATTCTAG

Protein sequence

MSTVLSMRPAITVSSVNLSPRLSPPLPPLPARISGEALVNRFDCVKVRSKLHVGSLGKNGDGEFKLPLLSKLLLMPRLPWPRRYAPKSPPPPF*
Homology
[Close]
BLAST of Csa6G058730 vs. TrEMBL
Match: A0A0A0KBD3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G058730 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.7e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MSTVLSMRPAITVSSVNLSPRLSPPLPPLPARISGEALVNRFDCVKVRSKLHVGSLGKNG 60
          MSTVLSMRPAITVSSVNLSPRLSPPLPPLPARISGEALVNRFDCVKVRSKLHVGSLGKNG
Sbjct: 1  MSTVLSMRPAITVSSVNLSPRLSPPLPPLPARISGEALVNRFDCVKVRSKLHVGSLGKNG 60

Query: 61 DGEFKLPLLSKLLLMPRLPWPRRYAPKSPPPPF 94
          DGEFKLPLLSKLLLMPRLPWPRRYAPKSPPPPF
Sbjct: 61 DGEFKLPLLSKLLLMPRLPWPRRYAPKSPPPPF 93

[Close]
BLAST of Csa6G058730 vs. NCBI nr
Match: gi|700190955|gb|KGN46159.1| (hypothetical protein Csa_6G058730 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 5.4e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MSTVLSMRPAITVSSVNLSPRLSPPLPPLPARISGEALVNRFDCVKVRSKLHVGSLGKNG 60
          MSTVLSMRPAITVSSVNLSPRLSPPLPPLPARISGEALVNRFDCVKVRSKLHVGSLGKNG
Sbjct: 1  MSTVLSMRPAITVSSVNLSPRLSPPLPPLPARISGEALVNRFDCVKVRSKLHVGSLGKNG 60

Query: 61 DGEFKLPLLSKLLLMPRLPWPRRYAPKSPPPPF 94
          DGEFKLPLLSKLLLMPRLPWPRRYAPKSPPPPF
Sbjct: 61 DGEFKLPLLSKLLLMPRLPWPRRYAPKSPPPPF 93

The following BLAST results are available for this feature:
BLAST of Csa6G058730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBD3_CUCSA3.7e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G058730 PE=4 SV=1[more]
BLAST of Csa6G058730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190955|gb|KGN46159.1|5.4e-46100.00hypothetical protein Csa_6G058730 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G058730.1Csa6G058730.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G058730CSPI06G05080Wild cucumber (PI 183967)cpicuB314
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G058730Cucumber (Gy14) v1cgycuB511
Csa6G058730Cucumber (Gy14) v2cgybcuB282