Csa6G055950 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G055950
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 4305696 .. 4306885 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGACTACGACTATCGTCTCTGAGGCTTGCACTTTTGTTGGGATAGCTAACTATGGAAAGTCGATTGGACTGGATGAAAAGATCAAGGTTGATGTGATCGTCATTAGTTCTGTTGTTGTTGACCCCAAAACAAGTGCTCTGCTCGACAAGGGAGAGGTGAGTGTGTTTATTGTTGGCTTTATCCTTTACATTGAAAATGTCTGGTTTCTTTTTTCCACTTTTGAAATGGAATGTATTGACTAAGGAACTCTTTAGATTGAGTTTCAAAGTTCTTAAAATGGTACTTTATGTGAAAATGAAGTGATTTTACATATTTAGAATGTTAATCCCGACAAACCAAGTGTGATAATTTTACGTGAGTGAAATAGTATGCCTGATTCTATCCATGCTTCTTTTATGCCACTGAAGTTGCTACTTTGACTAAAAAAGATTATACATCTAATAGGTTCCTATATTTTAAAAAGTACCTGATGAGTCCTTAGATTTTCACGTTTGTGTCCAATAGGTTGGCCGCCATTTGATATTTTTATAATTCAAATATTTATTAGATATAAAATTGAACTCTACACTATAAAATTCAAGAATTTGCAAACTAAAATATGAAATGTTGTGGTACATAGGAGCCACTGATGACTCCAGTTTAATAGTTACTTCAGGTTGTCTCATTTTCTAGTTTCACATCCTTTTCATTATTTTGAGCAACAATATTTTTTGTTACATAATTTAACAGGTGGAGATAAGTTTCAGTACTTAATATCTAAATATTCTTTACTATTAACTTAGGTTGTGCAACTTTAGCTGTGCTAGATAGTTCAGCAGTTGACTTCCCGATTATATATATACGTCATCCTTAAGAAAAAGAGAGGTTGTTTACAAATTTACTTGCATGAAATGATCAGCTGAAGACAACTTTTGTGAAGCACATGAGATAGATAATGTGTACAGAGGATTGTTGGTTTAAGAAGGATGGCGTTATTTGACGTTGAGATGTTTTTATATTCAAATGATAGCTTGCATGCTATTGAGTTACCACCTGACGATATTGAATCTCAATAGACTTTTAAGCAAAACCTTCTCATAGTAAAAATACCTTTTCTTTTCAGTGCATATCTCAGAAGGGTTTGTGCAGCAGATTTGATTATGCATCATTGATATTTCAAGGGAAGGAAAAAAAAGAAAGGCGCTAG

mRNA sequence

ATGTTGACTACGACTATCGTCTCTGAGGCTTGCACTTTTGTTGGGATAGCTAACTATGGAAAGTCGATTGGACTGGATGAAAAGATCAAGGTTGATGTGATCGTCATTAGTTCTGTTGTTGTTGACCCCAAAACAAGTGCTCTGCTCGACAAGGGAGAGTGCATATCTCAGAAGGGTTTGTGCAGCAGATTTGATTATGCATCATTGATATTTCAAGGGAAGGAAAAAAAAGAAAGGCGCTAG

Coding sequence (CDS)

ATGTTGACTACGACTATCGTCTCTGAGGCTTGCACTTTTGTTGGGATAGCTAACTATGGAAAGTCGATTGGACTGGATGAAAAGATCAAGGTTGATGTGATCGTCATTAGTTCTGTTGTTGTTGACCCCAAAACAAGTGCTCTGCTCGACAAGGGAGAGTGCATATCTCAGAAGGGTTTGTGCAGCAGATTTGATTATGCATCATTGATATTTCAAGGGAAGGAAAAAAAAGAAAGGCGCTAG

Protein sequence

MLTTTIVSEACTFVGIANYGKSIGLDEKIKVDVIVISSVVVDPKTSALLDKGECISQKGLCSRFDYASLIFQGKEKKERR*
Homology
[Close]
BLAST of Csa6G055950 vs. Swiss-Prot
Match: 5FCLL_ARATH (5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 OS=Arabidopsis thaliana GN=COG0212 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.2e-11
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 1 

Query: 1   MLTTTIVSEACTFVGIANYGKSIGLDEKIKVDVIVISSVVVDPKTSALLDKGECISQKGL 60
           +L    + EACT VG+A YG++IGLDEKIKVD+IVI SV V+P+T A L KGE  ++   
Sbjct: 185 LLKPETIMEACTSVGVAKYGRAIGLDEKIKVDLIVIGSVAVNPQTGARLGKGEGFAE--- 244

Query: 61  CSRFDYASLIFQG 74
               +Y  L + G
Sbjct: 245 ---LEYGMLRYMG 251

[Close]
BLAST of Csa6G055950 vs. TrEMBL
Match: A0A0A0K8Q5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G055950 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 3.9e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MLTTTIVSEACTFVGIANYGKSIGLDEKIKVDVIVISSVVVDPKTSALLDKGECISQKGL 60
          MLTTTIVSEACTFVGIANYGKSIGLDEKIKVDVIVISSVVVDPKTSALLDKGECISQKGL
Sbjct: 1  MLTTTIVSEACTFVGIANYGKSIGLDEKIKVDVIVISSVVVDPKTSALLDKGECISQKGL 60

Query: 61 CSRFDYASLIFQGKEKKERR 81
          CSRFDYASLIFQGKEKKERR
Sbjct: 61 CSRFDYASLIFQGKEKKERR 80

[Close]
BLAST of Csa6G055950 vs. TrEMBL
Match: A0A0J8D5I2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g011960 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.0e-12
Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 1 

Query: 1   MLTTTIVSEACTFVGIANYGKSIGLDEKIKVDVIVISSVVVDPKTSALLDKGECISQKGL 60
           MLT T ++EACT VG+A YG+ IGLDEKIKVD+IVI SV VDPKT A L KGE  ++   
Sbjct: 114 MLTPTAINEACTSVGVAKYGRPIGLDEKIKVDLIVIGSVAVDPKTGARLGKGEGFAE--- 173

Query: 61  CSRFDYASLIFQG 74
               +Y  L + G
Sbjct: 174 ---LEYGMLRYMG 180

[Close]
BLAST of Csa6G055950 vs. TrEMBL
Match: M5W517_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017090mg PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.8e-12
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 1 

Query: 1   MLTTTIVSEACTFVGIANYGKSIGLDEKIKVDVIVISSVVVDPKTSALLDKGECISQKGL 60
           MLT + + EACT VG+A YG++IGLDEKIKVD+IVI SV VDP+T A L KGE  ++   
Sbjct: 150 MLTPSTIKEACTSVGVAKYGRAIGLDEKIKVDLIVIGSVAVDPRTGARLGKGEGFAE--- 209

Query: 61  CSRFDYASLIFQG 74
               +Y  L F G
Sbjct: 210 ---LEYGMLRFMG 216

[Close]
BLAST of Csa6G055950 vs. TrEMBL
Match: A0A0A0KBB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G056470 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-11
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 1 

Query: 1   MLTTTIVSEACTFVGIANYGKSIGLDEKIKVDVIVISSVVVDPKTSALLDKGE 54
           MLT   + EACT VG+A YGK IGLDEKIKVD+IVI SV VDPKT A L KGE
Sbjct: 195 MLTPATIKEACTSVGVAKYGKPIGLDEKIKVDLIVIGSVAVDPKTGARLGKGE 247

[Close]
BLAST of Csa6G055950 vs. TrEMBL
Match: A0A068UUW3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033670001 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-11
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 

Query: 1   MLTTTIVSEACTFVGIANYGKSIGLDEKIKVDVIVISSVVVDPKTSALLDKGECISQKGL 60
           ML+++ + EACT VG+A YG++IGLDEKIKVD+IVI SV VDPKT A L KGE  ++   
Sbjct: 189 MLSSSTIKEACTSVGVAKYGRAIGLDEKIKVDLIVIGSVAVDPKTGARLGKGEGFAE--- 248

Query: 61  CSRFDYASLIFQG 74
               +Y  L + G
Sbjct: 249 ---LEYGMLRYMG 255

[Close]
BLAST of Csa6G055950 vs. TAIR10
Match: AT1G76730.1 (AT1G76730.1 NagB/RpiA/CoA transferase-like superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-12
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 1 

Query: 1   MLTTTIVSEACTFVGIANYGKSIGLDEKIKVDVIVISSVVVDPKTSALLDKGECISQKGL 60
           +L    + EACT VG+A YG++IGLDEKIKVD+IVI SV V+P+T A L KGE  ++   
Sbjct: 185 LLKPETIMEACTSVGVAKYGRAIGLDEKIKVDLIVIGSVAVNPQTGARLGKGEGFAE--- 244

Query: 61  CSRFDYASLIFQG 74
               +Y  L + G
Sbjct: 245 ---LEYGMLRYMG 251

[Close]
BLAST of Csa6G055950 vs. NCBI nr
Match: gi|700190921|gb|KGN46125.1| (hypothetical protein Csa_6G055950 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 5.7e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MLTTTIVSEACTFVGIANYGKSIGLDEKIKVDVIVISSVVVDPKTSALLDKGECISQKGL 60
          MLTTTIVSEACTFVGIANYGKSIGLDEKIKVDVIVISSVVVDPKTSALLDKGECISQKGL
Sbjct: 1  MLTTTIVSEACTFVGIANYGKSIGLDEKIKVDVIVISSVVVDPKTSALLDKGECISQKGL 60

Query: 61 CSRFDYASLIFQGKEKKERR 81
          CSRFDYASLIFQGKEKKERR
Sbjct: 61 CSRFDYASLIFQGKEKKERR 80

[Close]
BLAST of Csa6G055950 vs. NCBI nr
Match: gi|870868776|gb|KMT19579.1| (hypothetical protein BVRB_1g011960 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 78.6 bits (192), Expect = 5.7e-12
Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 1 

Query: 1   MLTTTIVSEACTFVGIANYGKSIGLDEKIKVDVIVISSVVVDPKTSALLDKGECISQKGL 60
           MLT T ++EACT VG+A YG+ IGLDEKIKVD+IVI SV VDPKT A L KGE  ++   
Sbjct: 114 MLTPTAINEACTSVGVAKYGRPIGLDEKIKVDLIVIGSVAVDPKTGARLGKGEGFAE--- 173

Query: 61  CSRFDYASLIFQG 74
               +Y  L + G
Sbjct: 174 ---LEYGMLRYMG 180

[Close]
BLAST of Csa6G055950 vs. NCBI nr
Match: gi|731313614|ref|XP_010681110.1| (PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 78.6 bits (192), Expect = 5.7e-12
Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 1 

Query: 1   MLTTTIVSEACTFVGIANYGKSIGLDEKIKVDVIVISSVVVDPKTSALLDKGECISQKGL 60
           MLT T ++EACT VG+A YG+ IGLDEKIKVD+IVI SV VDPKT A L KGE  ++   
Sbjct: 189 MLTPTAINEACTSVGVAKYGRPIGLDEKIKVDLIVIGSVAVDPKTGARLGKGEGFAE--- 248

Query: 61  CSRFDYASLIFQG 74
               +Y  L + G
Sbjct: 249 ---LEYGMLRYMG 255

[Close]
BLAST of Csa6G055950 vs. NCBI nr
Match: gi|645264041|ref|XP_008237507.1| (PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Prunus mume])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 1 

Query: 1   MLTTTIVSEACTFVGIANYGKSIGLDEKIKVDVIVISSVVVDPKTSALLDKGECISQKGL 60
           MLT + + EACT VG+A YG++IGLDEKIKVD+IVI SV VDP+T A L KGE  ++   
Sbjct: 198 MLTPSTIKEACTSVGVAKYGRAIGLDEKIKVDLIVIGSVAVDPRTGARLGKGEGFAE--- 257

Query: 61  CSRFDYASLIFQG 74
               +Y  L F G
Sbjct: 258 ---LEYGMLRFMG 264

[Close]
BLAST of Csa6G055950 vs. NCBI nr
Match: gi|595793875|ref|XP_007200686.1| (hypothetical protein PRUPE_ppa017090mg [Prunus persica])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 1 

Query: 1   MLTTTIVSEACTFVGIANYGKSIGLDEKIKVDVIVISSVVVDPKTSALLDKGECISQKGL 60
           MLT + + EACT VG+A YG++IGLDEKIKVD+IVI SV VDP+T A L KGE  ++   
Sbjct: 150 MLTPSTIKEACTSVGVAKYGRAIGLDEKIKVDLIVIGSVAVDPRTGARLGKGEGFAE--- 209

Query: 61  CSRFDYASLIFQG 74
               +Y  L F G
Sbjct: 210 ---LEYGMLRFMG 216

The following BLAST results are available for this feature:
BLAST of Csa6G055950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
5FCLL_ARATH2.2e-1149.325-formyltetrahydrofolate cyclo-ligase-like protein COG0212 OS=Arabidopsis thalia... [more]
BLAST of Csa6G055950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8Q5_CUCSA3.9e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G055950 PE=4 SV=1[more]
A0A0J8D5I2_BETVU4.0e-1256.16Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g011960 PE=4 S... [more]
M5W517_PRUPE8.8e-1254.79Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017090mg PE=4 SV=1[more]
A0A0A0KBB0_CUCSA1.2e-1171.70Uncharacterized protein OS=Cucumis sativus GN=Csa_6G056470 PE=4 SV=1[more]
A0A068UUW3_COFCA1.5e-1153.42Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033670001 PE=4 SV=1[more]
BLAST of Csa6G055950 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G76730.11.2e-1249.32 NagB/RpiA/CoA transferase-like superfamily protein[more]
BLAST of Csa6G055950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190921|gb|KGN46125.1|5.7e-36100.00hypothetical protein Csa_6G055950 [Cucumis sativus][more]
gi|870868776|gb|KMT19579.1|5.7e-1256.16hypothetical protein BVRB_1g011960 [Beta vulgaris subsp. vulgaris][more]
gi|731313614|ref|XP_010681110.1|5.7e-1256.16PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Beta vulg... [more]
gi|645264041|ref|XP_008237507.1|1.3e-1154.79PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Prunus mu... [more]
gi|595793875|ref|XP_007200686.1|1.3e-1154.79hypothetical protein PRUPE_ppa017090mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G055950.1Csa6G055950.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR130175-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE-RELATEDcoord: 1..53
score: 7.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G055950Cucsa.363820Cucumber (Gy14) v1cgycuB511
Csa6G055950Carg01610Silver-seed gourdcarcuB0850
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G055950Cucurbita maxima (Rimu)cmacuB308
Csa6G055950Cucurbita maxima (Rimu)cmacuB767
Csa6G055950Cucurbita moschata (Rifu)cmocuB297
Csa6G055950Cucurbita moschata (Rifu)cmocuB760
Csa6G055950Melon (DHL92) v3.5.1cumeB469
Csa6G055950Watermelon (Charleston Gray)cuwcgB509
Csa6G055950Watermelon (97103) v1cuwmB470
Csa6G055950Cucurbita pepo (Zucchini)cpecuB197
Csa6G055950Cucurbita pepo (Zucchini)cpecuB459
Csa6G055950Bottle gourd (USVL1VR-Ls)culsiB478
Csa6G055950Cucumber (Gy14) v2cgybcuB282
Csa6G055950Melon (DHL92) v3.6.1cumedB451
Csa6G055950Silver-seed gourdcarcuB0066
Csa6G055950Watermelon (97103) v2cuwmbB500
Csa6G055950Wax gourdcuwgoB574