Csa6G045170 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G045170
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 3661384 .. 3661677 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACAATGCTTAACTGGAGGATGCGAACAATTGGCGACGTGAGTAAGATAATCGGAAAAAAGATGGAAGACAGAGAAAGACGAGAGGCAGGACGGGCTTGGGGGCTTTGGTAATCACAATAACTACCAACTAAAATACCCTATATTATTAAATATTCCTTTCAATTTTTCATTTTGTTTCAAACCGTCAGCCGAGCGTTCCTTCGGTCCGAGCCGCGAGCGGAGCGCTCCTTCAGCTCGAGCCGCGAGCTGAGCGCTTCTTCGTTCGAGCCGCGAGTTGAGCGCTCCTAA

mRNA sequence

ATGGCGACAATGCTTAACTGGAGGATGCGAACAATTGGCGACGTGAGTAAGATAATCGGAAAAAAGATGGAAGACAGAGAAAGACGAGAGGCAGGACGGGCTTGGGGGCTTTGCCGAGCGTTCCTTCGGTCCGAGCCGCGAGCGGAGCGCTCCTTCAGCTCGAGCCGCGAGCTGAGCGCTTCTTCGTTCGAGCCGCGAGTTGAGCGCTCCTAA

Coding sequence (CDS)

ATGGCGACAATGCTTAACTGGAGGATGCGAACAATTGGCGACGTGAGTAAGATAATCGGAAAAAAGATGGAAGACAGAGAAAGACGAGAGGCAGGACGGGCTTGGGGGCTTTGCCGAGCGTTCCTTCGGTCCGAGCCGCGAGCGGAGCGCTCCTTCAGCTCGAGCCGCGAGCTGAGCGCTTCTTCGTTCGAGCCGCGAGTTGAGCGCTCCTAA

Protein sequence

MATMLNWRMRTIGDVSKIIGKKMEDRERREAGRAWGLCRAFLRSEPRAERSFSSSRELSASSFEPRVERS*
Homology
[Close]
BLAST of Csa6G045170 vs. TrEMBL
Match: A0A0A0K9D4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G045170 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 4.4e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MATMLNWRMRTIGDVSKIIGKKMEDRERREAGRAWGLCRAFLRSEPRAERSFSSSRELSA 60
          MATMLNWRMRTIGDVSKIIGKKMEDRERREAGRAWGLCRAFLRSEPRAERSFSSSRELSA
Sbjct: 1  MATMLNWRMRTIGDVSKIIGKKMEDRERREAGRAWGLCRAFLRSEPRAERSFSSSRELSA 60

Query: 61 SSFEPRVERS 71
          SSFEPRVERS
Sbjct: 61 SSFEPRVERS 70

[Close]
BLAST of Csa6G045170 vs. NCBI nr
Match: gi|700190834|gb|KGN46038.1| (hypothetical protein Csa_6G045170 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 6.3e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MATMLNWRMRTIGDVSKIIGKKMEDRERREAGRAWGLCRAFLRSEPRAERSFSSSRELSA 60
          MATMLNWRMRTIGDVSKIIGKKMEDRERREAGRAWGLCRAFLRSEPRAERSFSSSRELSA
Sbjct: 1  MATMLNWRMRTIGDVSKIIGKKMEDRERREAGRAWGLCRAFLRSEPRAERSFSSSRELSA 60

Query: 61 SSFEPRVERS 71
          SSFEPRVERS
Sbjct: 61 SSFEPRVERS 70

The following BLAST results are available for this feature:
BLAST of Csa6G045170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9D4_CUCSA4.4e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G045170 PE=4 SV=1[more]
BLAST of Csa6G045170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190834|gb|KGN46038.1|6.3e-31100.00hypothetical protein Csa_6G045170 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G045170.1Csa6G045170.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G045170Bottle gourd (USVL1VR-Ls)culsiB478
Csa6G045170Cucumber (Gy14) v2cgybcuB282
Csa6G045170Melon (DHL92) v3.6.1cumedB456
Csa6G045170Silver-seed gourdcarcuB0711
Csa6G045170Silver-seed gourdcarcuB0850
Csa6G045170Watermelon (97103) v2cuwmbB488
Csa6G045170Wax gourdcuwgoB588
Csa6G045170Cucumber (Gy14) v1cgycuB511
Csa6G045170Cucurbita maxima (Rimu)cmacuB308
Csa6G045170Cucurbita maxima (Rimu)cmacuB767
Csa6G045170Cucurbita moschata (Rifu)cmocuB297
Csa6G045170Cucurbita moschata (Rifu)cmocuB760
Csa6G045170Melon (DHL92) v3.5.1cumeB474
Csa6G045170Watermelon (Charleston Gray)cuwcgB497
Csa6G045170Watermelon (97103) v1cuwmB457
Csa6G045170Cucurbita pepo (Zucchini)cpecuB197
Csa6G045170Cucurbita pepo (Zucchini)cpecuB459