Csa6G041780 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G041780
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 3173986 .. 3174509 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAAAATCATTGTTTCATTTGAAAATGTGGTGAATGGTAATTATCTCTATTTTGACAAGTATATTGATATTGCTTTTGCTGACATTGATTGTGTCTCTGAGGTTAATAAAGCTTTTATTGTTGCTTCATCTAGCCAGTTGAATGATTATTTCGAGAATGTGTTAAAGGATGACATTGTTTGTTCTGATGTGTTTGCTAGTGTTGCTTTTAGGAATTGGCCTTCTAAGGGTGTTTGTGAAGTTGATTGTTGATAATGTTATGGTTGGTAAAAATGTTGTCAGATATGATGGTCAAGATGATAGTGTGTGATATTTCCATGTTAGATGCTTGTGCCAATGGATCAATTGTGAAAAAGGATGACGTTCATTTCTCAATTTTTCTCAATTTAGCATGAAAAATGTAGGTTCTAAGGGTTTTATGAAAGTTAGTCTAACTCATATTCCTACTATTGGTCACATTGATGCTGAATATTTTGTTAGAAAAAGATTTGTTCCTAAGAAAGAGGTTGCTGATGATCTAT

mRNA sequence

ATGGGTAAAATCATTGTTTCATTTGAAAATGTGGTGAATGGTAATTATCTCTATTTTGACAAGTATATTGATATTGCTTTTGCTGACATTGATTGTGTCTCTGAGGTTAATAAAGCTTTTATTGTTGCTTCATCTAGCCAGTTGAATGATTATTTCGAGAATGTGTTAAAGGATGACATTGTTTGTTCTGATGTGTTTGCTAGTGTTGCTTTTAGGAATTGGCCTTCTAAGGGTGTTTGTGAAGTTGATTGTTGA

Coding sequence (CDS)

ATGGGTAAAATCATTGTTTCATTTGAAAATGTGGTGAATGGTAATTATCTCTATTTTGACAAGTATATTGATATTGCTTTTGCTGACATTGATTGTGTCTCTGAGGTTAATAAAGCTTTTATTGTTGCTTCATCTAGCCAGTTGAATGATTATTTCGAGAATGTGTTAAAGGATGACATTGTTTGTTCTGATGTGTTTGCTAGTGTTGCTTTTAGGAATTGGCCTTCTAAGGGTGTTTGTGAAGTTGATTGTTGA

Protein sequence

MGKIIVSFENVVNGNYLYFDKYIDIAFADIDCVSEVNKAFIVASSSQLNDYFENVLKDDIVCSDVFASVAFRNWPSKGVCEVDC*
Homology
[Close]
BLAST of Csa6G041780 vs. TrEMBL
Match: A0A0A0K9A4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G041780 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 4.3e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MGKIIVSFENVVNGNYLYFDKYIDIAFADIDCVSEVNKAFIVASSSQLNDYFENVLKDDI 60
          MGKIIVSFENVVNGNYLYFDKYIDIAFADIDCVSEVNKAFIVASSSQLNDYFENVLKDDI
Sbjct: 1  MGKIIVSFENVVNGNYLYFDKYIDIAFADIDCVSEVNKAFIVASSSQLNDYFENVLKDDI 60

Query: 61 VCSDVFASVAFRNWPSKGVCEVDC 85
          VCSDVFASVAFRNWPSKGVCEVDC
Sbjct: 61 VCSDVFASVAFRNWPSKGVCEVDC 84

[Close]
BLAST of Csa6G041780 vs. NCBI nr
Match: gi|700190789|gb|KGN45993.1| (hypothetical protein Csa_6G041780 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 6.1e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MGKIIVSFENVVNGNYLYFDKYIDIAFADIDCVSEVNKAFIVASSSQLNDYFENVLKDDI 60
          MGKIIVSFENVVNGNYLYFDKYIDIAFADIDCVSEVNKAFIVASSSQLNDYFENVLKDDI
Sbjct: 1  MGKIIVSFENVVNGNYLYFDKYIDIAFADIDCVSEVNKAFIVASSSQLNDYFENVLKDDI 60

Query: 61 VCSDVFASVAFRNWPSKGVCEVDC 85
          VCSDVFASVAFRNWPSKGVCEVDC
Sbjct: 61 VCSDVFASVAFRNWPSKGVCEVDC 84

The following BLAST results are available for this feature:
BLAST of Csa6G041780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9A4_CUCSA4.3e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G041780 PE=4 SV=1[more]
BLAST of Csa6G041780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190789|gb|KGN45993.1|6.1e-41100.00hypothetical protein Csa_6G041780 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU108974cucumber EST collection version 3.0transcribed_cluster
CU112545cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G041780.1Csa6G041780.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU112545CU112545transcribed_cluster
CU108974CU108974transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G041780Cucumber (Gy14) v1cgycuB511
Csa6G041780Cucurbita maxima (Rimu)cmacuB373
Csa6G041780Cucurbita maxima (Rimu)cmacuB913
Csa6G041780Cucurbita moschata (Rifu)cmocuB364
Csa6G041780Cucurbita moschata (Rifu)cmocuB899
Csa6G041780Melon (DHL92) v3.5.1cumeB476
Csa6G041780Watermelon (Charleston Gray)cuwcgB502
Csa6G041780Watermelon (97103) v1cuwmB459
Csa6G041780Cucurbita pepo (Zucchini)cpecuB146
Csa6G041780Cucurbita pepo (Zucchini)cpecuB335
Csa6G041780Bottle gourd (USVL1VR-Ls)culsiB473
Csa6G041780Cucumber (Gy14) v2cgybcuB282
Csa6G041780Melon (DHL92) v3.6.1cumedB455
Csa6G041780Silver-seed gourdcarcuB0248
Csa6G041780Watermelon (97103) v2cuwmbB493
Csa6G041780Watermelon (97103) v2cuwmbB505
Csa6G041780Wax gourdcuwgoB590