Csa6G041760 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G041760
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 3158266 .. 3158806 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAAGAAAAAAAAGGTGACAACGACGATGAAGAAGAATTTCTCAGGTTTGAGATCAGCCAATGATCCAAAGAACTTGTGTCTGATTCAATTCTTTAGAAAATTTGTAATAATTAGAATTTAAAACATTGAGAAAGCATTATTTCTCTCAAAATTTGGTTGCCTGTTGCTGATTGATTATACGTATTCTGCTTTGTTTATATTTTGTGGCTTTCAAATTCGAATCTTAGTTAGTTTAGTTGCTTTTATGCAGTGGTGAGAGCCCCATCAGAGCTTCCACCAACAGCCTTTTGCTTCACACCTCTGTACATGCTGAGGTAACTAACCTTACCTAACTGAAAACAAATGTTTTGACGGTTCTTTTGATGTTCCATTTCTTGGTCTAGTGTTCGTATTTTTGTGATTCCTGAGTGCTAACAAATGCCAGATTGTGCCAACAATTTCTGTTCAGTTCACAAATATGGCCTGGATGAAATATGAATACCTGTTTGTTCGAGGTGGGGGAGAATTGTCTGCTTCGTGTTGGTTTGCATCTTGA

mRNA sequence

ATGGATGAAGAAAAAAAAGGTGACAACGACGATGAAGAAGAATTTCTCAGTGGTGAGAGCCCCATCAGAGCTTCCACCAACAGCCTTTTGCTTCACACCTCTGTACATGCTGAGATTGTGCCAACAATTTCTGTTCAGTTCACAAATATGGCCTGGATGAAATATGAATACCTGTTTGTTCGAGGTGGGGGAGAATTGTCTGCTTCGTGTTGGTTTGCATCTTGA

Coding sequence (CDS)

ATGGATGAAGAAAAAAAAGGTGACAACGACGATGAAGAAGAATTTCTCAGTGGTGAGAGCCCCATCAGAGCTTCCACCAACAGCCTTTTGCTTCACACCTCTGTACATGCTGAGATTGTGCCAACAATTTCTGTTCAGTTCACAAATATGGCCTGGATGAAATATGAATACCTGTTTGTTCGAGGTGGGGGAGAATTGTCTGCTTCGTGTTGGTTTGCATCTTGA

Protein sequence

MDEEKKGDNDDEEEFLSGESPIRASTNSLLLHTSVHAEIVPTISVQFTNMAWMKYEYLFVRGGGELSASCWFAS*
Homology
[Close]
BLAST of Csa6G041760 vs. TrEMBL
Match: A0A0A0KE21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G041760 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.3e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MDEEKKGDNDDEEEFLSGESPIRASTNSLLLHTSVHAEIVPTISVQFTNMAWMKYEYLFV 60
          MDEEKKGDNDDEEEFLSGESPIRASTNSLLLHTSVHAEIVPTISVQFTNMAWMKYEYLFV
Sbjct: 1  MDEEKKGDNDDEEEFLSGESPIRASTNSLLLHTSVHAEIVPTISVQFTNMAWMKYEYLFV 60

Query: 61 RGGGELSASCWFAS 75
          RGGGELSASCWFAS
Sbjct: 61 RGGGELSASCWFAS 74

[Close]
BLAST of Csa6G041760 vs. NCBI nr
Match: gi|700190787|gb|KGN45991.1| (hypothetical protein Csa_6G041760 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 7.6e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MDEEKKGDNDDEEEFLSGESPIRASTNSLLLHTSVHAEIVPTISVQFTNMAWMKYEYLFV 60
          MDEEKKGDNDDEEEFLSGESPIRASTNSLLLHTSVHAEIVPTISVQFTNMAWMKYEYLFV
Sbjct: 1  MDEEKKGDNDDEEEFLSGESPIRASTNSLLLHTSVHAEIVPTISVQFTNMAWMKYEYLFV 60

Query: 61 RGGGELSASCWFAS 75
          RGGGELSASCWFAS
Sbjct: 61 RGGGELSASCWFAS 74

The following BLAST results are available for this feature:
BLAST of Csa6G041760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KE21_CUCSA5.3e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G041760 PE=4 SV=1[more]
BLAST of Csa6G041760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190787|gb|KGN45991.1|7.6e-35100.00hypothetical protein Csa_6G041760 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU094066cucumber EST collection version 3.0transcribed_cluster
CU094917cucumber EST collection version 3.0transcribed_cluster
CU129671cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G041760.1Csa6G041760.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU094066CU094066transcribed_cluster
CU129671CU129671transcribed_cluster
CU094917CU094917transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G041760Watermelon (97103) v2cuwmbB493
Csa6G041760Watermelon (97103) v2cuwmbB505
Csa6G041760Wax gourdcuwgoB590
Csa6G041760Cucumber (Gy14) v1cgycuB511
Csa6G041760Cucurbita maxima (Rimu)cmacuB373
Csa6G041760Cucurbita moschata (Rifu)cmocuB364
Csa6G041760Melon (DHL92) v3.5.1cumeB476
Csa6G041760Watermelon (Charleston Gray)cuwcgB502
Csa6G041760Watermelon (97103) v1cuwmB459
Csa6G041760Cucurbita pepo (Zucchini)cpecuB146
Csa6G041760Bottle gourd (USVL1VR-Ls)culsiB473
Csa6G041760Cucumber (Gy14) v2cgybcuB282
Csa6G041760Melon (DHL92) v3.6.1cumedB455
Csa6G041760Silver-seed gourdcarcuB0248