Csa6G032480 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G032480
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Heavy metal-associated isoprenylated plant protein 26; contains IPR006121 (Heavy metal-associated domain, HMA)
Location	Chr6 : 2612480 .. 2613886 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAAGCAAAATCATCATCCCCCACCAAATTAATTCATTTTTCATCCCCAATTCATGTCTGAGCTCAAGGCAAGCAATAAAACCCCAACACTACTCTCTTTTTTTTGGCAGAAAATTATAATTTTGTTTGGCTTTTTGATAATTGACAAATGTGTTTTGCAGCAATTTTGTATGGTGATGAAAATCAATGTTGACTGCAATGCTTGTTGTAGGAAGCTTAGGAGGATTGTGAAGAAAATGAAAGGTAAGGTTTCTATTTCATTCACAAATGAAATTAATCAAATGTCTTGTTTATTAGTTCACTTAATATAAAATTTTATCTCCACTGTTTTCTTTCAATAATTTAAAAAAAATATAAGTTGTTACGTATATTTAACTTTTTTAATCATTAATTTTTGAAAATGAAGTATATTTATCCTTAATTTCTTACCATCCTTTCATTCCAAAAGAGTTAATTTTCAGCCATATTCAAAACACAAAAACAATTTTTTTTTCTTTTAGTTTTAAATTTGAACTTTGGTTTTTTTGTTTTTTGTTTTTTTAAATTTCTGCAAAAGTTAAATAATTGAAGGATTGTTTTCTATGCTTAATTTTAAAAAACTAAAAATCAAAAATCAAATGTGCCAATAAGGATTCAAAATTAAAAATTAATTAAAATTAAAATTGTACTATCTTAGCTATAAATTATATTAATCATGAAAGTTTGAGATTCAATTTCATTATTTTTTGATTGAATTTTTGTAATTATTGTAAATTTGGAGGACCCAATTTTAATAGGGTGAACCCATCCCATAAAAATGGGTGTAACAATTTCATGTTTAATTTTTAGTTTTTTAAAAACTATGTTTATATTCCCCCAAGTTGAGATTAGAAGTTTGGTTATTAATTTGAATATCAAAATAGTAACGAAGATGGATTGTTATTGTGAATTTGGACGAGGAAGCAATCGAGACGTATATGATAGAGAGGGAGCGACACAGGTTGATCGTGTTTGGCAGATTCAAGCCATCCGATATTGCCATTAAGATCAGAAAGAAAATGAATCGTAGAGTCGAAATCCTCGATGTTGAAGAAATGGAGCCCTTACAAGCCACCGATCAAAACTCACCGCCACCAGAGAACATTCAAGGTCTTGGTTCTGGCCCTGGCCCTGGCCCCAACGTTGATCAACATCACATGCCCATGTTTCCTTCATTGGAGCAAGATCATGGAAGGCCGTCTATGTTTCCATCTCTTGCCGCCAACCAATGCCGTTCCCACCCATCTTGTCGCTCGGATTTCGCCATAACTTGCTTCCCAAAGCCTGACATGGAAGAGCGCTTCTGGCAGTATGGATATGACTATGAACTTGTTGGAGATAGAGAAGAACGACCTACCATCTCTATTCACAATTACTACCACTACTAG

mRNA sequence

ATGTCTGAGCTCAAGCAATTTTGTATGGTGATGAAAATCAATGTTGACTGCAATGCTTGTTGTAGGAAGCTTAGGAGGATTGTGAAGAAAATGAAAGCAATCGAGACGTATATGATAGAGAGGGAGCGACACAGGTTGATCGTGTTTGGCAGATTCAAGCCATCCGATATTGCCATTAAGATCAGAAAGAAAATGAATCGTAGAGTCGAAATCCTCGATGTTGAAGAAATGGAGCCCTTACAAGCCACCGATCAAAACTCACCGCCACCAGAGAACATTCAAGGTCTTGGTTCTGGCCCTGGCCCTGGCCCCAACGTTGATCAACATCACATGCCCATGTTTCCTTCATTGGAGCAAGATCATGGAAGGCCGTCTATGTTTCCATCTCTTGCCGCCAACCAATGCCGTTCCCACCCATCTTGTCGCTCGGATTTCGCCATAACTTGCTTCCCAAAGCCTGACATGGAAGAGCGCTTCTGGCAGTATGGATATGACTATGAACTTGTTGGAGATAGAGAAGAACGACCTACCATCTCTATTCACAATTACTACCACTACTAG

Coding sequence (CDS)

ATGTCTGAGCTCAAGCAATTTTGTATGGTGATGAAAATCAATGTTGACTGCAATGCTTGTTGTAGGAAGCTTAGGAGGATTGTGAAGAAAATGAAAGCAATCGAGACGTATATGATAGAGAGGGAGCGACACAGGTTGATCGTGTTTGGCAGATTCAAGCCATCCGATATTGCCATTAAGATCAGAAAGAAAATGAATCGTAGAGTCGAAATCCTCGATGTTGAAGAAATGGAGCCCTTACAAGCCACCGATCAAAACTCACCGCCACCAGAGAACATTCAAGGTCTTGGTTCTGGCCCTGGCCCTGGCCCCAACGTTGATCAACATCACATGCCCATGTTTCCTTCATTGGAGCAAGATCATGGAAGGCCGTCTATGTTTCCATCTCTTGCCGCCAACCAATGCCGTTCCCACCCATCTTGTCGCTCGGATTTCGCCATAACTTGCTTCCCAAAGCCTGACATGGAAGAGCGCTTCTGGCAGTATGGATATGACTATGAACTTGTTGGAGATAGAGAAGAACGACCTACCATCTCTATTCACAATTACTACCACTACTAG

Protein sequence

MSELKQFCMVMKINVDCNACCRKLRRIVKKMKAIETYMIERERHRLIVFGRFKPSDIAIKIRKKMNRRVEILDVEEMEPLQATDQNSPPPENIQGLGSGPGPGPNVDQHHMPMFPSLEQDHGRPSMFPSLAANQCRSHPSCRSDFAITCFPKPDMEERFWQYGYDYELVGDREERPTISIHNYYHY*

Homology

[Close]

BLAST of Csa6G032480 vs. TrEMBL
Match: A0A0A0K866_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G032480 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 1.5e-107
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1


Query: 1   MSELKQFCMVMKINVDCNACCRKLRRIVKKMKAIETYMIERERHRLIVFGRFKPSDIAIK 60
           MSELKQFCMVMKINVDCNACCRKLRRIVKKMKAIETYMIERERHRLIVFGRFKPSDIAIK
Sbjct: 1   MSELKQFCMVMKINVDCNACCRKLRRIVKKMKAIETYMIERERHRLIVFGRFKPSDIAIK 60

Query: 61  IRKKMNRRVEILDVEEMEPLQATDQNSPPPENIQGLGSGPGPGPNVDQHHMPMFPSLEQD 120
           IRKKMNRRVEILDVEEMEPLQATDQNSPPPENIQGLGSGPGPGPNVDQHHMPMFPSLEQD
Sbjct: 61  IRKKMNRRVEILDVEEMEPLQATDQNSPPPENIQGLGSGPGPGPNVDQHHMPMFPSLEQD 120

Query: 121 HGRPSMFPSLAANQCRSHPSCRSDFAITCFPKPDMEERFWQYGYDYELVGDREERPTISI 180
           HGRPSMFPSLAANQCRSHPSCRSDFAITCFPKPDMEERFWQYGYDYELVGDREERPTISI
Sbjct: 121 HGRPSMFPSLAANQCRSHPSCRSDFAITCFPKPDMEERFWQYGYDYELVGDREERPTISI 180

Query: 181 HNYYHY 187
           HNYYHY
Sbjct: 181 HNYYHY 186

[Close]

BLAST of Csa6G032480 vs. TrEMBL
Match: K7K2M7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G082600 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.7e-24
Identity = 56/78 (71.79%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1  MSELKQFCMVMKINVDCNACCRKLRRIVKKMKAIETYMIERERHRLIVFGRFKPSDIAIK 60
          MSE K  CMVM+INVDCN+CCRKLRRI+ +MKAIE +MIE+++ R+ VFGRF+P D+AIK
Sbjct: 1  MSE-KYCCMVMRINVDCNSCCRKLRRIILRMKAIENHMIEKQQRRVFVFGRFEPGDVAIK 60

Query: 61 IRKKMNRRVEILDVEEME 79
          I+KKMNRRVEIL+V+EME
Sbjct: 61 IKKKMNRRVEILEVQEME 77

[Close]

BLAST of Csa6G032480 vs. TrEMBL
Match: A0A0S3T1R2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G027700 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.0e-23
Identity = 53/78 (67.95%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1  MSELKQFCMVMKINVDCNACCRKLRRIVKKMKAIETYMIERERHRLIVFGRFKPSDIAIK 60
          MSE K  CM+M+INVDCN+CCRKLRRI+ +MK IE ++IE+++ R+ VFGRF+P+D+AIK
Sbjct: 1  MSE-KYCCMIMRINVDCNSCCRKLRRIILRMKVIENHLIEKQQRRVCVFGRFEPADVAIK 60

Query: 61 IRKKMNRRVEILDVEEME 79
          I+KKMNRRVEIL+V+EME
Sbjct: 61 IKKKMNRRVEILEVQEME 77

[Close]

BLAST of Csa6G032480 vs. TrEMBL
Match: A0A0L9UT78_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g137100 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.0e-23
Identity = 53/78 (67.95%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1  MSELKQFCMVMKINVDCNACCRKLRRIVKKMKAIETYMIERERHRLIVFGRFKPSDIAIK 60
          MSE K  CM+M+INVDCN+CCRKLRRI+ +MK IE ++IE+++ R+ VFGRF+P+D+AIK
Sbjct: 1  MSE-KYCCMIMRINVDCNSCCRKLRRIILRMKVIENHLIEKQQRRVCVFGRFEPADVAIK 60

Query: 61 IRKKMNRRVEILDVEEME 79
          I+KKMNRRVEIL+V+EME
Sbjct: 61 IKKKMNRRVEILEVQEME 77

[Close]

BLAST of Csa6G032480 vs. TrEMBL
Match: V7C5K8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G034700g PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.0e-23
Identity = 53/78 (67.95%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1  MSELKQFCMVMKINVDCNACCRKLRRIVKKMKAIETYMIERERHRLIVFGRFKPSDIAIK 60
          MSE K  CM+M+INVDCN+CCRKLRRI+ +MK IE ++IE+++ R+ VFGRF+P+D+AIK
Sbjct: 1  MSE-KYCCMIMRINVDCNSCCRKLRRIILRMKVIENHLIEKQQRRVCVFGRFEPADVAIK 60

Query: 61 IRKKMNRRVEILDVEEME 79
          I+KKMNRRVEIL+V+EME
Sbjct: 61 IKKKMNRRVEILEVQEME 77

[Close]

BLAST of Csa6G032480 vs. TAIR10
Match: AT3G25855.1 (AT3G25855.1 Copper transport protein family)

HSP 1 Score: 105.9 bits (263), Expect = 2.7e-23
Identity = 45/77 (58.44%), Postives = 64/77 (83.12%), Query Frame = 1


Query: 1  MSELKQFCMVMKINVDCNACCRKLRRIVKKMKAIETYMIERERHRLIVFGRFKPSDIAIK 60
          MSE KQ C+VM+IN+DCNACCRK RRI+  MK ++T+MI ++  ++I+ GRF+PSD+A+K
Sbjct: 1  MSEKKQCCVVMRINLDCNACCRKARRIIINMKEVDTHMINKKERQVILCGRFRPSDVALK 60

Query: 61 IRKKMNRRVEILDVEEM 78
          +++KM RRVEIL+VE++
Sbjct: 61 LQRKMKRRVEILEVEDL 77

[Close]

BLAST of Csa6G032480 vs. TAIR10
Match: AT3G21490.1 (AT3G21490.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-08
Identity = 22/64 (34.38%), Postives = 41/64 (64.06%), Query Frame = 1


Query: 13 INVDCNACCRKLRRIVKKMKAIETYMIERERHRLIVFGRFKPSDIAIKIRKKMNRRVEIL 72
          +++ CN C RK+ R++ K K +ET++ +   H+++V G+  P+ +  K++KK  +RV+I+
Sbjct: 20 VSMHCNDCERKIARVISKFKGVETFVTDMINHKVVVRGKIDPNKLLKKLKKKTGKRVKIV 79

Query: 73 DVEE 77
            EE
Sbjct: 80 VKEE 83

[Close]

BLAST of Csa6G032480 vs. NCBI nr
Match: gi|449465637|ref|XP_004150534.1| (PREDICTED: uncharacterized protein LOC101209809 isoform X1 [Cucumis sativus])

HSP 1 Score: 396.7 bits (1018), Expect = 2.2e-107
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1


Query: 1   MSELKQFCMVMKINVDCNACCRKLRRIVKKMKAIETYMIERERHRLIVFGRFKPSDIAIK 60
           MSELKQFCMVMKINVDCNACCRKLRRIVKKMKAIETYMIERERHRLIVFGRFKPSDIAIK
Sbjct: 1   MSELKQFCMVMKINVDCNACCRKLRRIVKKMKAIETYMIERERHRLIVFGRFKPSDIAIK 60

Query: 61  IRKKMNRRVEILDVEEMEPLQATDQNSPPPENIQGLGSGPGPGPNVDQHHMPMFPSLEQD 120
           IRKKMNRRVEILDVEEMEPLQATDQNSPPPENIQGLGSGPGPGPNVDQHHMPMFPSLEQD
Sbjct: 61  IRKKMNRRVEILDVEEMEPLQATDQNSPPPENIQGLGSGPGPGPNVDQHHMPMFPSLEQD 120

Query: 121 HGRPSMFPSLAANQCRSHPSCRSDFAITCFPKPDMEERFWQYGYDYELVGDREERPTISI 180
           HGRPSMFPSLAANQCRSHPSCRSDFAITCFPKPDMEERFWQYGYDYELVGDREERPTISI
Sbjct: 121 HGRPSMFPSLAANQCRSHPSCRSDFAITCFPKPDMEERFWQYGYDYELVGDREERPTISI 180

Query: 181 HNYYHY 187
           HNYYHY
Sbjct: 181 HNYYHY 186

[Close]

BLAST of Csa6G032480 vs. NCBI nr
Match: gi|778710103|ref|XP_011656520.1| (PREDICTED: uncharacterized protein LOC101209809 isoform X2 [Cucumis sativus])

HSP 1 Score: 380.2 bits (975), Expect = 2.1e-102
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1


Query: 9   MVMKINVDCNACCRKLRRIVKKMKAIETYMIERERHRLIVFGRFKPSDIAIKIRKKMNRR 68
           MVMKINVDCNACCRKLRRIVKKMKAIETYMIERERHRLIVFGRFKPSDIAIKIRKKMNRR
Sbjct: 1   MVMKINVDCNACCRKLRRIVKKMKAIETYMIERERHRLIVFGRFKPSDIAIKIRKKMNRR 60

Query: 69  VEILDVEEMEPLQATDQNSPPPENIQGLGSGPGPGPNVDQHHMPMFPSLEQDHGRPSMFP 128
           VEILDVEEMEPLQATDQNSPPPENIQGLGSGPGPGPNVDQHHMPMFPSLEQDHGRPSMFP
Sbjct: 61  VEILDVEEMEPLQATDQNSPPPENIQGLGSGPGPGPNVDQHHMPMFPSLEQDHGRPSMFP 120

Query: 129 SLAANQCRSHPSCRSDFAITCFPKPDMEERFWQYGYDYELVGDREERPTISIHNYYHY 187
           SLAANQCRSHPSCRSDFAITCFPKPDMEERFWQYGYDYELVGDREERPTISIHNYYHY
Sbjct: 121 SLAANQCRSHPSCRSDFAITCFPKPDMEERFWQYGYDYELVGDREERPTISIHNYYHY 178

[Close]

BLAST of Csa6G032480 vs. NCBI nr
Match: gi|659089702|ref|XP_008445651.1| (PREDICTED: uncharacterized protein LOC103488610 isoform X1 [Cucumis melo])

HSP 1 Score: 362.1 bits (928), Expect = 6.0e-97
Identity = 168/187 (89.84%), Postives = 176/187 (94.12%), Query Frame = 1


Query: 1   MSELKQFCMVMKINVDCNACCRKLRRIVKKMKAIETYMIERERHRLIVFGRFKPSDIAIK 60
           MSE+K FCMVMKINVDCNACCRKLRRIV KMKAIETYMIERERHRLIVFGRFKPSDIAIK
Sbjct: 1   MSEIKHFCMVMKINVDCNACCRKLRRIVLKMKAIETYMIERERHRLIVFGRFKPSDIAIK 60

Query: 61  IRKKMNRRVEILDVEEMEPLQATDQNSPPPENIQGLGSGPGPGPNVDQHHMPMFPSLEQ- 120
           IRKKMNRRVEILDVEEMEPL ATDQN PPPENIQG G GPGPGPN DQHH+PMFPSLEQ 
Sbjct: 61  IRKKMNRRVEILDVEEMEPLPATDQNPPPPENIQGPGPGPGPGPNADQHHIPMFPSLEQA 120

Query: 121 DHGRPSMFPSLAANQCRSHPSCRSDFAITCFPKPDMEERFWQYGYDYELVGDREERPTIS 180
           DHGRP MFPSLAANQCRS+PSCR DF +TCFP+PDMEERFW+YGYDYE+VGDREERPTIS
Sbjct: 121 DHGRPPMFPSLAANQCRSYPSCRPDFGVTCFPEPDMEERFWEYGYDYEVVGDREERPTIS 180

Query: 181 IHNYYHY 187
           +HNYYHY
Sbjct: 181 LHNYYHY 187

[Close]

BLAST of Csa6G032480 vs. NCBI nr
Match: gi|659089704|ref|XP_008445652.1| (PREDICTED: uncharacterized protein LOC103488610 isoform X2 [Cucumis melo])

HSP 1 Score: 348.2 bits (892), Expect = 8.9e-93
Identity = 162/179 (90.50%), Postives = 169/179 (94.41%), Query Frame = 1


Query: 9   MVMKINVDCNACCRKLRRIVKKMKAIETYMIERERHRLIVFGRFKPSDIAIKIRKKMNRR 68
           MVMKINVDCNACCRKLRRIV KMKAIETYMIERERHRLIVFGRFKPSDIAIKIRKKMNRR
Sbjct: 1   MVMKINVDCNACCRKLRRIVLKMKAIETYMIERERHRLIVFGRFKPSDIAIKIRKKMNRR 60

Query: 69  VEILDVEEMEPLQATDQNSPPPENIQGLGSGPGPGPNVDQHHMPMFPSLEQ-DHGRPSMF 128
           VEILDVEEMEPL ATDQN PPPENIQG G GPGPGPN DQHH+PMFPSLEQ DHGRP MF
Sbjct: 61  VEILDVEEMEPLPATDQNPPPPENIQGPGPGPGPGPNADQHHIPMFPSLEQADHGRPPMF 120

Query: 129 PSLAANQCRSHPSCRSDFAITCFPKPDMEERFWQYGYDYELVGDREERPTISIHNYYHY 187
           PSLAANQCRS+PSCR DF +TCFP+PDMEERFW+YGYDYE+VGDREERPTIS+HNYYHY
Sbjct: 121 PSLAANQCRSYPSCRPDFGVTCFPEPDMEERFWEYGYDYEVVGDREERPTISLHNYYHY 179

[Close]

BLAST of Csa6G032480 vs. NCBI nr
Match: gi|356498278|ref|XP_003517980.1| (PREDICTED: uncharacterized protein LOC100813538 [Glycine max])

HSP 1 Score: 119.4 bits (298), Expect = 6.7e-24
Identity = 56/78 (71.79%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1  MSELKQFCMVMKINVDCNACCRKLRRIVKKMKAIETYMIERERHRLIVFGRFKPSDIAIK 60
          MSE K  CMVM+INVDCN+CCRKLRRI+ +MKAIE +MIE+++ R+ VFGRF+P D+AIK
Sbjct: 1  MSE-KYCCMVMRINVDCNSCCRKLRRIILRMKAIENHMIEKQQRRVFVFGRFEPGDVAIK 60

Query: 61 IRKKMNRRVEILDVEEME 79
          I+KKMNRRVEIL+V+EME
Sbjct: 61 IKKKMNRRVEILEVQEME 77

The following BLAST results are available for this feature:

BLAST of Csa6G032480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K866_CUCSA	1.5e-107	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G032480 PE=4 SV=1	[more]
K7K2M7_SOYBN	4.7e-24	71.79	Uncharacterized protein OS=Glycine max GN=GLYMA_01G082600 PE=4 SV=1	[more]
A0A0S3T1R2_PHAAN	4.0e-23	67.95	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G027700 PE=...	[more]
A0A0L9UT78_PHAAN	4.0e-23	67.95	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g137100 PE=4 SV=1	[more]
V7C5K8_PHAVU	4.0e-23	67.95	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G034700g PE=4 SV=1	[more]

BLAST of Csa6G032480 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G25855.1	2.7e-23	58.44	Copper transport protein family	[more]
AT3G21490.1	1.9e-08	34.38	Heavy metal transport/detoxification superfamily protein	[more]

BLAST of Csa6G032480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465637\|ref\|XP_004150534.1\|	2.2e-107	100.00	PREDICTED: uncharacterized protein LOC101209809 isoform X1 [Cucumis sativus]	[more]
gi\|778710103\|ref\|XP_011656520.1\|	2.1e-102	100.00	PREDICTED: uncharacterized protein LOC101209809 isoform X2 [Cucumis sativus]	[more]
gi\|659089702\|ref\|XP_008445651.1\|	6.0e-97	89.84	PREDICTED: uncharacterized protein LOC103488610 isoform X1 [Cucumis melo]	[more]
gi\|659089704\|ref\|XP_008445652.1\|	8.9e-93	90.50	PREDICTED: uncharacterized protein LOC103488610 isoform X2 [Cucumis melo]	[more]
gi\|356498278\|ref\|XP_003517980.1\|	6.7e-24	71.79	PREDICTED: uncharacterized protein LOC100813538 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006121	HMA_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0030001	metal ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030001	metal ion transport
biological_process	GO:0008150	biological_process
biological_process	GO:0046916	cellular transition metal ion homeostasis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0046914	transition metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G032480.1	Csa6G032480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006121	Heavy metal-associated domain, HMA	unknown	SSF55008	HMA, heavy metal-associated domain	coord: 9..63 score: 3.0
None	No IPR available	GENE3D	G3DSA:3.30.70.100		coord: 4..71 score: 1.
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 5..78 score: 7.2
None	No IPR available	PANTHER	PTHR22814:SF144	SUBFAMILY NOT NAMED	coord: 5..78 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G032480	Cla007993	Watermelon (97103) v1	cuwmB459
Csa6G032480	MELO3C011555	Melon (DHL92) v3.5.1	cumeB476
Csa6G032480	ClCG08G005220	Watermelon (Charleston Gray)	cuwcgB499
Csa6G032480	Lsi08G004000	Bottle gourd (USVL1VR-Ls)	culsiB472
Csa6G032480	MELO3C011555.2	Melon (DHL92) v3.6.1	cumedB455
Csa6G032480	Cla97C08G148090	Watermelon (97103) v2	cuwmbB491
Csa6G032480	Bhi04G001532	Wax gourd	cuwgoB578
Csa6G032480	CSPI06G03130	Wild cucumber (PI 183967)	cpicuB314
Csa6G032480	Cucsa.365380	Cucumber (Gy14) v1	cgycuB511
Csa6G032480	CmaCh15G009070	Cucurbita maxima (Rimu)	cmacuB314
Csa6G032480	CmoCh15G009450	Cucurbita moschata (Rifu)	cmocuB302
Csa6G032480	Cp4.1LG13g06650	Cucurbita pepo (Zucchini)	cpecuB194
Csa6G032480	CsGy6G003200	Cucumber (Gy14) v2	cgybcuB282
Csa6G032480	Carg26876	Silver-seed gourd	carcuB0966

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G032480	Cucurbita pepo (Zucchini)	cpecuB466
Csa6G032480	Silver-seed gourd	carcuB0516
Csa6G032480	Cucurbita maxima (Rimu)	cmacuB773
Csa6G032480	Cucurbita moschata (Rifu)	cmocuB765