Csa6G024390 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G024390
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 2376469 .. 2376807 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAGGCATCTGTAGGCCAATGGGGAGAGGATTTGAAGATAGGATCAAGTGCCAAAATGTCCTTCAAGAAACGCAATTGCGAAGTCAGAAGCAAGTGAGCGATCTGAAATTTAGAATGGACAATGCAAACACATCTACTAAGGCACAACTAAATCAACAAGATGAGAAAATAATGGAGCTTATAACACAAAATGGAGAGCTCCAAGGAGAACTTCTTGGAGTCAGTGAGCAAAATGAGGCTCTAATCGAAAGAGTAGAAAGACTGACTGACTTGGTTGAAATTTTGGCAAAAAGATGTGACACAGTTTACTGCATTATTGAGATATCGACATAG

mRNA sequence

ATGGATGAAGGCATCTGTAGGCCAATGGGGAGAGGATTTGAAGATAGGATCAAGTGCCAAAATGTCCTTCAAGAAACGCAATTGCGAAGTCAGAAGCAAGTGAGCGATCTGAAATTTAGAATGGACAATGCAAACACATCTACTAAGGCACAACTAAATCAACAAGATGAGAAAATAATGGAGCTTATAACACAAAATGGAGAGCTCCAAGGAGAACTTCTTGGAGTCAGTGAGCAAAATGAGGCTCTAATCGAAAGAGTAGAAAGACTGACTGACTTGGTTGAAATTTTGGCAAAAAGATGTGACACAGTTTACTGCATTATTGAGATATCGACATAG

Coding sequence (CDS)

ATGGATGAAGGCATCTGTAGGCCAATGGGGAGAGGATTTGAAGATAGGATCAAGTGCCAAAATGTCCTTCAAGAAACGCAATTGCGAAGTCAGAAGCAAGTGAGCGATCTGAAATTTAGAATGGACAATGCAAACACATCTACTAAGGCACAACTAAATCAACAAGATGAGAAAATAATGGAGCTTATAACACAAAATGGAGAGCTCCAAGGAGAACTTCTTGGAGTCAGTGAGCAAAATGAGGCTCTAATCGAAAGAGTAGAAAGACTGACTGACTTGGTTGAAATTTTGGCAAAAAGATGTGACACAGTTTACTGCATTATTGAGATATCGACATAG

Protein sequence

MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIMELITQNGELQGELLGVSEQNEALIERVERLTDLVEILAKRCDTVYCIIEIST*

Homology

[Close]

BLAST of Csa6G024390 vs. TrEMBL
Match: A0A0A0KDS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G024390 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.1e-55
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIM 60
           MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIM
Sbjct: 1   MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIM 60

Query: 61  ELITQNGELQGELLGVSEQNEALIERVERLTDLVEILAKRCDTVYCIIEIST 113
           ELITQNGELQGELLGVSEQNEALIERVERLTDLVEILAKRCDTVYCIIEIST
Sbjct: 61  ELITQNGELQGELLGVSEQNEALIERVERLTDLVEILAKRCDTVYCIIEIST 112

[Close]

BLAST of Csa6G024390 vs. TrEMBL
Match: A0A0A0KJB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G049020 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 1


Query: 2   DEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIME 61
           D+ +C+PM  GFED I+CQ+  QE   +SQKQ+ D K ++DN N   + Q+     K+ E
Sbjct: 54  DDYVCKPMSSGFEDEIQCQSNFQEMHFQSQKQLEDFKLKLDNKNHHHQVQIEGLKAKMQE 113

Query: 62  LITQNGELQGELLGVSEQNEALIERVERLT 92
           LI Q  EL+        QN+ ++E V++ T
Sbjct: 114 LILQEQELK-------VQNQVIMEMVKQTT 136

[Close]

BLAST of Csa6G024390 vs. NCBI nr
Match: gi|700190727|gb|KGN45931.1| (hypothetical protein Csa_6G024390 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 4.5e-55
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIM 60
           MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIM
Sbjct: 1   MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIM 60

Query: 61  ELITQNGELQGELLGVSEQNEALIERVERLTDLVEILAKRCDTVYCIIEIST 113
           ELITQNGELQGELLGVSEQNEALIERVERLTDLVEILAKRCDTVYCIIEIST
Sbjct: 61  ELITQNGELQGELLGVSEQNEALIERVERLTDLVEILAKRCDTVYCIIEIST 112

[Close]

BLAST of Csa6G024390 vs. NCBI nr
Match: gi|700194476|gb|KGN49653.1| (hypothetical protein Csa_5G049020 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 2.8e-09
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 1


Query: 2   DEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIME 61
           D+ +C+PM  GFED I+CQ+  QE   +SQKQ+ D K ++DN N   + Q+     K+ E
Sbjct: 54  DDYVCKPMSSGFEDEIQCQSNFQEMHFQSQKQLEDFKLKLDNKNHHHQVQIEGLKAKMQE 113

Query: 62  LITQNGELQGELLGVSEQNEALIERVERLT 92
           LI Q  EL+        QN+ ++E V++ T
Sbjct: 114 LILQEQELK-------VQNQVIMEMVKQTT 136

The following BLAST results are available for this feature:

BLAST of Csa6G024390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDS3_CUCSA	3.1e-55	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G024390 PE=4 SV=1	[more]
A0A0A0KJB9_CUCSA	2.0e-09	38.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G049020 PE=4 SV=1	[more]

BLAST of Csa6G024390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190727\|gb\|KGN45931.1\|	4.5e-55	100.00	hypothetical protein Csa_6G024390 [Cucumis sativus]	[more]
gi\|700194476\|gb\|KGN49653.1\|	2.8e-09	38.89	hypothetical protein Csa_5G049020 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G024390.1	Csa6G024390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 52..72 score: -coord: 80..100 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G024390	CSPI06G02960	Wild cucumber (PI 183967)	cpicuB314

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G024390	Cucumber (Gy14) v2	cgybcuB282
Csa6G024390	Melon (DHL92) v3.6.1	cumedB455
Csa6G024390	Silver-seed gourd	carcuB0094
Csa6G024390	Silver-seed gourd	carcuB0249
Csa6G024390	Watermelon (97103) v2	cuwmbB490
Csa6G024390	Cucumber (Gy14) v1	cgycuB511
Csa6G024390	Cucurbita maxima (Rimu)	cmacuB377
Csa6G024390	Cucurbita maxima (Rimu)	cmacuB912
Csa6G024390	Cucurbita moschata (Rifu)	cmocuB367
Csa6G024390	Cucurbita moschata (Rifu)	cmocuB898
Csa6G024390	Melon (DHL92) v3.5.1	cumeB476
Csa6G024390	Watermelon (Charleston Gray)	cuwcgB504
Csa6G024390	Watermelon (97103) v1	cuwmB476
Csa6G024390	Cucurbita pepo (Zucchini)	cpecuB148
Csa6G024390	Cucurbita pepo (Zucchini)	cpecuB334
Csa6G024390	Bottle gourd (USVL1VR-Ls)	culsiB475