Csa6G020220 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G020220
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 2174095 .. 2174829 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTGGTCAAGCTTACAAACTTTGATCCTCTTCTTGACGCAACCTCCTTTTTTGCTCAAATTTCCTTCGACGATGCTGATGTGAAATTCACGCCTTCGAAATTCTTCATAATTTCCTCTCACCGTTCCCCTCGCTTCATCGCAACGCTACAATTGTCGCCACAATGGTTCACTAGTTTTTCCGTTGATCATGATCATAGTTCTAAGGTTTCCCTTGAATCCTTCCATGATGCTATATTGGATGGTGGAAGTTTTGCTTCAATGACAATCCATCTTTTGGACAAAACAAACCAAATAATCCTTAGATTTGATACTCCTTCAAGTAAGTATATTTTTCTTTCAATCTTTTAATTTGCTTCTAAAATTGCATGATCAATTCTTGTCATTTCTTGATCAACATTTTAGACTACTATTATTTTTTTTATGTATATATTGTGAGAACAATGTTGTCACATAATAATTATCTTGATTGTTTTGTGGCAGATTTTTCTCTTAATCTTTTATTTTCTTTATAGTTTATGGTTTAATCTAATTAATTCGAAATATATGGTTTGTTTTTTAGGCGAAATCCAACCTTTGCATCATGAATTGGCATTGTCACCTCCCCAAGCAGAAGACAATCAAATTGGCCAACATGAACTTGACGAAGGAAAATATTTCATAGTTAAATCTAAGGCATTAAGACGAATTATTAAAGAGTTACCTATCTTCCAAAATGATTCAAGTAATTGA

mRNA sequence

ATGTTCTTGGTCAAGCTTACAAACTTTGATCCTCTTCTTGACGCAACCTCCTTTTTTGCTCAAATTTCCTTCGACGATGCTGATGTGAAATTCACGCCTTCGAAATTCTTCATAATTTCCTCTCACCGTTCCCCTCGCTTCATCGCAACGCTACAATTGTCGCCACAATGGTTCACTAGTTTTTCCGTTGATCATGATCATAGTTCTAAGGTTTCCCTTGAATCCTTCCATGATGCTATATTGGATGGTGGAAGTTTTGCTTCAATGACAATCCATCTTTTGGACAAAACAAACCAAATAATCCTTAGATTTGATACTCCTTCAAGCGAAATCCAACCTTTGCATCATGAATTGGCATTGTCACCTCCCCAAGCAGAAGACAATCAAATTGGCCAACATGAACTTGACGAAGGAAAATATTTCATAGTTAAATCTAAGGCATTAAGACGAATTATTAAAGAGTTACCTATCTTCCAAAATGATTCAAGTAATTGA

Coding sequence (CDS)

ATGTTCTTGGTCAAGCTTACAAACTTTGATCCTCTTCTTGACGCAACCTCCTTTTTTGCTCAAATTTCCTTCGACGATGCTGATGTGAAATTCACGCCTTCGAAATTCTTCATAATTTCCTCTCACCGTTCCCCTCGCTTCATCGCAACGCTACAATTGTCGCCACAATGGTTCACTAGTTTTTCCGTTGATCATGATCATAGTTCTAAGGTTTCCCTTGAATCCTTCCATGATGCTATATTGGATGGTGGAAGTTTTGCTTCAATGACAATCCATCTTTTGGACAAAACAAACCAAATAATCCTTAGATTTGATACTCCTTCAAGCGAAATCCAACCTTTGCATCATGAATTGGCATTGTCACCTCCCCAAGCAGAAGACAATCAAATTGGCCAACATGAACTTGACGAAGGAAAATATTTCATAGTTAAATCTAAGGCATTAAGACGAATTATTAAAGAGTTACCTATCTTCCAAAATGATTCAAGTAATTGA

Protein sequence

MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDSSN*
Homology
[Close]
BLAST of Csa6G020220 vs. TrEMBL
Match: A0A0A0K902_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020220 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 2.6e-87
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1 

Query: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
           MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120
           FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDSSN 165
           SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDSSN
Sbjct: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDSSN 164

[Close]
BLAST of Csa6G020220 vs. TrEMBL
Match: A0A0A0K9W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002290 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.0e-38
Identity = 82/109 (75.23%), Postives = 95/109 (87.16%), Query Frame = 1 

Query: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
           MFLVKLT F+PLLD+T F A  S ++A VKFTP K F+I S+R P FIATLQLSP+WFT+
Sbjct: 1   MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTN 60

Query: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSS 110
           FSVDH HSSKVSLESFHDA+LDGG F++M+IHLLDKTNQ+ILRFDTPSS
Sbjct: 61  FSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQMILRFDTPSS 109

[Close]
BLAST of Csa6G020220 vs. TrEMBL
Match: A0A0A0LIE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G155090 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.4e-17
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 1 

Query: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
           MF +K+ N DP LDATS F +   D+  +KF+PS F +I+ ++ P F A L +    F  
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N I+ +F+ PS  I     ++  
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120

Query: 121 SPPQAED 128
           S    E+
Sbjct: 121 SAVPREE 126

[Close]
BLAST of Csa6G020220 vs. TrEMBL
Match: A0A0A0KB76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002310 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-14
Identity = 54/152 (35.53%), Postives = 79/152 (51.97%), Query Frame = 1 

Query: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
           MF +K+   DPLLDA S F  I  D   +KF+ S F II+ ++ P F A L +    F  
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120
           + V  DH  +VSL S H A+  G +++S+ IHL ++ N I L F+       P+  ++  
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPSRHSPVPMRRKMRF 120

Query: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRII 153
             P  ED   G+ + D  K F ++S   R II
Sbjct: 121 EVPM-EDWSAGEIDFD-AKSFSIESDLFRDII 150

[Close]
BLAST of Csa6G020220 vs. NCBI nr
Match: gi|700190704|gb|KGN45908.1| (hypothetical protein Csa_6G020220 [Cucumis sativus])

HSP 1 Score: 329.3 bits (843), Expect = 3.8e-87
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1 

Query: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
           MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120
           FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDSSN 165
           SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDSSN
Sbjct: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDSSN 164

[Close]
BLAST of Csa6G020220 vs. NCBI nr
Match: gi|659128729|ref|XP_008464344.1| (PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo])

HSP 1 Score: 305.8 bits (782), Expect = 4.5e-80
Identity = 151/162 (93.21%), Postives = 158/162 (97.53%), Query Frame = 1 

Query: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
           MFLVKL NFDPLLDATSF AQISFD+AD+KFTPSKFFII+SHRSPRFIATLQLSPQWFT+
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120
           FSVD+DHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQ+ILRFDTPSSEIQPLHHEL L
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS 163
           SPPQAEDNQIGQHELDE KYFIVKSKALRRIIK+LPIFQNDS
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS 162

[Close]
BLAST of Csa6G020220 vs. NCBI nr
Match: gi|659117591|ref|XP_008458682.1| (PREDICTED: proliferating cell nuclear antigen-like [Cucumis melo])

HSP 1 Score: 208.0 bits (528), Expect = 1.3e-50
Identity = 106/162 (65.43%), Postives = 133/162 (82.10%), Query Frame = 1 

Query: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
           MFLV+L  F+PL+DATS  AQ++  DADVKFTP    II S+RSP+F+ATLQLS + FT+
Sbjct: 1   MFLVRLEQFEPLIDATSLLAQVA-KDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTN 60

Query: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120
           FSVDH+ SSKVSL+ FHDA+LDGGSF+SMTIHLLD TNQ++LRF+TPS ++ PLHHELAL
Sbjct: 61  FSVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELAL 120

Query: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS 163
           SPPQAE+  +GQ  ++ G +F V S+ LRRIIKELP+F  D+
Sbjct: 121 SPPQAEN--LGQ--VEYGNFFTVTSRELRRIIKELPLFHQDT 157

[Close]
BLAST of Csa6G020220 vs. NCBI nr
Match: gi|659128753|ref|XP_008464355.1| (PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo])

HSP 1 Score: 172.2 bits (435), Expect = 7.7e-40
Identity = 92/162 (56.79%), Postives = 122/162 (75.31%), Query Frame = 1 

Query: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
           MFLV+L +FDPL DATS  AQI+  +AD+KFTP  F II+S+RSPRF+A LQ++   F +
Sbjct: 3   MFLVRLKDFDPLFDATSRLAQIA-READIKFTPLFFSIIASNRSPRFVAYLQMTHHCFIN 62

Query: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120
           + VD+DH+S++SLESFHDA+LDGG+  SMTIHLL    Q+ILRF++ SS    +HHEL+L
Sbjct: 63  YKVDNDHTSRISLESFHDALLDGGASPSMTIHLLANIKQLILRFES-SSHAPKVHHELSL 122

Query: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS 163
           +P Q ED  +G  E+D  K+F + SK LRR+I+ LPIF  DS
Sbjct: 123 TPSQEED--LG--EVDYAKFFSIDSKDLRRVIRNLPIFHGDS 158

[Close]
BLAST of Csa6G020220 vs. NCBI nr
Match: gi|700190430|gb|KGN45634.1| (hypothetical protein Csa_6G002290 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 1.5e-38
Identity = 82/109 (75.23%), Postives = 95/109 (87.16%), Query Frame = 1 

Query: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
           MFLVKLT F+PLLD+T F A  S ++A VKFTP K F+I S+R P FIATLQLSP+WFT+
Sbjct: 1   MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTN 60

Query: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSS 110
           FSVDH HSSKVSLESFHDA+LDGG F++M+IHLLDKTNQ+ILRFDTPSS
Sbjct: 61  FSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQMILRFDTPSS 109

The following BLAST results are available for this feature:
BLAST of Csa6G020220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K902_CUCSA2.6e-87100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020220 PE=4 SV=1[more]
A0A0A0K9W4_CUCSA1.0e-3875.23Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002290 PE=4 SV=1[more]
A0A0A0LIE0_CUCSA8.4e-1738.58Uncharacterized protein OS=Cucumis sativus GN=Csa_2G155090 PE=4 SV=1[more]
A0A0A0KB76_CUCSA2.3e-1435.53Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002310 PE=4 SV=1[more]
BLAST of Csa6G020220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190704|gb|KGN45908.1|3.8e-87100.00hypothetical protein Csa_6G020220 [Cucumis sativus][more]
gi|659128729|ref|XP_008464344.1|4.5e-8093.21PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo][more]
gi|659117591|ref|XP_008458682.1|1.3e-5065.43PREDICTED: proliferating cell nuclear antigen-like [Cucumis melo][more]
gi|659128753|ref|XP_008464355.1|7.7e-4056.79PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo][more]
gi|700190430|gb|KGN45634.1|1.5e-3875.23hypothetical protein Csa_6G002290 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G020220.1Csa6G020220.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.70.10.10coord: 1..158
score: 4.
NoneNo IPR availableunknownSSF55979DNA clampcoord: 1..105
score: 9.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G020220MELO3C030216.2Melon (DHL92) v3.6.1cumedB455
Csa6G020220CSPI06G02750Wild cucumber (PI 183967)cpicuB314
Csa6G020220CsGy6G002850Cucumber (Gy14) v2cgybcuB282
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G020220Watermelon (97103) v2cuwmbB490
Csa6G020220Wax gourdcuwgoB589
Csa6G020220Cucumber (Gy14) v1cgycuB511
Csa6G020220Melon (DHL92) v3.5.1cumeB418
Csa6G020220Watermelon (97103) v1cuwmB463
Csa6G020220Watermelon (97103) v1cuwmB475