Csa6G020200 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G020200
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 2163431 .. 2163625 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAGAGGGTTTTGTTACAAAGATAATGCTTTTTTCGTCGGCAATGTGGATGAATGTATCGAGCAGTTTGTCATTACTACTGTTGATTTTGGTTTACCTATTATGGAGGCTCGTGTTGGAGACGATGTTCTATTTCGTCTACAAATCGTATCATCATCTGAGAGTATCTACACATCAGACTATCTCATATAA

mRNA sequence

ATGGTTAGAGGGTTTTGTTACAAAGATAATGCTTTTTTCGTCGGCAATGTGGATGAATGTATCGAGCAGTTTGTCATTACTACTGTTGATTTTGGTTTACCTATTATGGAGGCTCGTGTTGGAGACGATGTTCTATTTCGTCTACAAATCGTATCATCATCTGAGAGTATCTACACATCAGACTATCTCATATAA

Coding sequence (CDS)

ATGGTTAGAGGGTTTTGTTACAAAGATAATGCTTTTTTCGTCGGCAATGTGGATGAATGTATCGAGCAGTTTGTCATTACTACTGTTGATTTTGGTTTACCTATTATGGAGGCTCGTGTTGGAGACGATGTTCTATTTCGTCTACAAATCGTATCATCATCTGAGAGTATCTACACATCAGACTATCTCATATAA

Protein sequence

MVRGFCYKDNAFFVGNVDECIEQFVITTVDFGLPIMEARVGDDVLFRLQIVSSSESIYTSDYLI*
Homology
[Close]
BLAST of Csa6G020200 vs. TrEMBL
Match: A0A0A0KDQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020200 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.1e-28
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 

Query: 1  MVRGFCYKDNAFFVGNVDECIEQFVITTVDFGLPIMEARVGDDVLFRLQIVSSSESIYTS 60
          MVRGFCYKDNAFFVGNVDECIEQFVITTVDFGLPIMEARVGDDVLFRLQIVSSSESIYTS
Sbjct: 1  MVRGFCYKDNAFFVGNVDECIEQFVITTVDFGLPIMEARVGDDVLFRLQIVSSSESIYTS 60

Query: 61 DYLI 65
          DYLI
Sbjct: 61 DYLI 64

[Close]
BLAST of Csa6G020200 vs. NCBI nr
Match: gi|700190702|gb|KGN45906.1| (hypothetical protein Csa_6G020200 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 5.9e-28
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 

Query: 1  MVRGFCYKDNAFFVGNVDECIEQFVITTVDFGLPIMEARVGDDVLFRLQIVSSSESIYTS 60
          MVRGFCYKDNAFFVGNVDECIEQFVITTVDFGLPIMEARVGDDVLFRLQIVSSSESIYTS
Sbjct: 1  MVRGFCYKDNAFFVGNVDECIEQFVITTVDFGLPIMEARVGDDVLFRLQIVSSSESIYTS 60

Query: 61 DYLI 65
          DYLI
Sbjct: 61 DYLI 64

The following BLAST results are available for this feature:
BLAST of Csa6G020200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDQ0_CUCSA4.1e-28100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020200 PE=4 SV=1[more]
BLAST of Csa6G020200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190702|gb|KGN45906.1|5.9e-28100.00hypothetical protein Csa_6G020200 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G020200.1Csa6G020200.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G020200CSPI06G02730Wild cucumber (PI 183967)cpicuB314
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G020200Watermelon (97103) v2cuwmbB490
Csa6G020200Watermelon (97103) v2cuwmbB504
Csa6G020200Wax gourdcuwgoB589
Csa6G020200Cucumber (Gy14) v1cgycuB511
Csa6G020200Melon (DHL92) v3.5.1cumeB418
Csa6G020200Watermelon (Charleston Gray)cuwcgB513
Csa6G020200Watermelon (97103) v1cuwmB462
Csa6G020200Watermelon (97103) v1cuwmB463
Csa6G020200Watermelon (97103) v1cuwmB475
Csa6G020200Bottle gourd (USVL1VR-Ls)culsiB471
Csa6G020200Cucumber (Gy14) v2cgybcuB282
Csa6G020200Melon (DHL92) v3.6.1cumedB455