Csa6G017070 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G017070
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 2029001 .. 2029386 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAACGCGGATCACATGTTTTTGATTTCGCGGATTTCGCAATTTCACGTTCATATGGTGGTTTCTGAACCGAACTCTTTGTTTCGGTTCATGCCCGGTTCAGTCGGTCTTTCTGTAATACTTTTGATTGCTTTTTTTCGCGGTTGAGGTTTGGAAGTCCGGATTGTCAAATGGTTGAGTCCTGGAGGTCTTCTGATCTGAGTAGTTGTTGGTCTAAAAAGGGGAATGGAGATGGCGGTTTGTGGGTGTGATGTGTGAAGGAGGCGTGGAAGTTCAAAGATGAGAGGAGAATGGATATAGCTACGGCCGGCGAATTGCAAAAGGAGAAGCCCGTGGTGAAAACTGAAGTCCCAAAGCTTTCAAGTGTGGGATATGGCCGCTGA

mRNA sequence

ATGAACAACGCGGATCACATGTTTTTGATTTCGCGGATTTCGCAATTTCACGTTCATATGGTGGTTTCTGAACCGAACTCTTTGTTTCGGTTCATGCCCGGTTCAGTCGGTCTTTCTGAGGCGTGGAAGTTCAAAGATGAGAGGAGAATGGATATAGCTACGGCCGGCGAATTGCAAAAGGAGAAGCCCGTGGTGAAAACTGAAGTCCCAAAGCTTTCAAGTGTGGGATATGGCCGCTGA

Coding sequence (CDS)

ATGAACAACGCGGATCACATGTTTTTGATTTCGCGGATTTCGCAATTTCACGTTCATATGGTGGTTTCTGAACCGAACTCTTTGTTTCGGTTCATGCCCGGTTCAGTCGGTCTTTCTGAGGCGTGGAAGTTCAAAGATGAGAGGAGAATGGATATAGCTACGGCCGGCGAATTGCAAAAGGAGAAGCCCGTGGTGAAAACTGAAGTCCCAAAGCTTTCAAGTGTGGGATATGGCCGCTGA

Protein sequence

MNNADHMFLISRISQFHVHMVVSEPNSLFRFMPGSVGLSEAWKFKDERRMDIATAGELQKEKPVVKTEVPKLSSVGYGR*
Homology
[Close]
BLAST of Csa6G017070 vs. TrEMBL
Match: A0A0A0KDN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017070 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.5e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MNNADHMFLISRISQFHVHMVVSEPNSLFRFMPGSVGLSEAWKFKDERRMDIATAGELQK 60
          MNNADHMFLISRISQFHVHMVVSEPNSLFRFMPGSVGLSEAWKFKDERRMDIATAGELQK
Sbjct: 1  MNNADHMFLISRISQFHVHMVVSEPNSLFRFMPGSVGLSEAWKFKDERRMDIATAGELQK 60

Query: 61 EKPVVKTEVPKLSSVGYGR 80
          EKPVVKTEVPKLSSVGYGR
Sbjct: 61 EKPVVKTEVPKLSSVGYGR 79

[Close]
BLAST of Csa6G017070 vs. NCBI nr
Match: gi|700190687|gb|KGN45891.1| (hypothetical protein Csa_6G017070 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 5.1e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MNNADHMFLISRISQFHVHMVVSEPNSLFRFMPGSVGLSEAWKFKDERRMDIATAGELQK 60
          MNNADHMFLISRISQFHVHMVVSEPNSLFRFMPGSVGLSEAWKFKDERRMDIATAGELQK
Sbjct: 1  MNNADHMFLISRISQFHVHMVVSEPNSLFRFMPGSVGLSEAWKFKDERRMDIATAGELQK 60

Query: 61 EKPVVKTEVPKLSSVGYGR 80
          EKPVVKTEVPKLSSVGYGR
Sbjct: 61 EKPVVKTEVPKLSSVGYGR 79

The following BLAST results are available for this feature:
BLAST of Csa6G017070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDN3_CUCSA3.5e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017070 PE=4 SV=1[more]
BLAST of Csa6G017070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190687|gb|KGN45891.1|5.1e-37100.00hypothetical protein Csa_6G017070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G017070.1Csa6G017070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G017070CSPI06G02620Wild cucumber (PI 183967)cpicuB314
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G017070Watermelon (97103) v2cuwmbB490
Csa6G017070Watermelon (97103) v2cuwmbB504
Csa6G017070Wax gourdcuwgoB589
Csa6G017070Cucumber (Gy14) v1cgycuB511
Csa6G017070Cucurbita maxima (Rimu)cmacuB485
Csa6G017070Cucurbita maxima (Rimu)cmacuB487
Csa6G017070Cucurbita moschata (Rifu)cmocuB473
Csa6G017070Melon (DHL92) v3.5.1cumeB415
Csa6G017070Watermelon (Charleston Gray)cuwcgB500
Csa6G017070Watermelon (Charleston Gray)cuwcgB513
Csa6G017070Watermelon (97103) v1cuwmB462
Csa6G017070Watermelon (97103) v1cuwmB475
Csa6G017070Cucurbita pepo (Zucchini)cpecuB584
Csa6G017070Cucurbita pepo (Zucchini)cpecuB793
Csa6G017070Bottle gourd (USVL1VR-Ls)culsiB471
Csa6G017070Cucumber (Gy14) v2cgybcuB282
Csa6G017070Melon (DHL92) v3.6.1cumedB455