Csa6G016940 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G016940
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 1910404 .. 1910724 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATAAGGGCAAAAAAAGGAATGAATCTTAGGTCTGAGCGGGTAAACGCTGGTGAAATGAATCCCAGGTTTGAGTGAGAAATGTGTTCTTGATGGCCAGATGTTGGTGAAGTGAATCCCAGGTCTATCGTGAGATGTTGGTGAAAGAGAATCACAGGTCTAGATAATGAGACACTGGAGAAAGTGAATCCAAGGTCTAAGAAATGCATGATTGTCTCAAGACGCTGGTGGAAGTCCCAAGTCTATCACGAGACATTGGTGAAGAGAATTTCAAGTCTAGGCGATGAAAGAATCCCAAGTTCCGTCGAAGAGTTGTGA

mRNA sequence

ATGAAGATAAGGGCAAAAAAAGGAATGAATCTTAGGTCTGAGCGGGTAAACGCTGGTGAAATGAATCCCAGAATCACAGGTCTAGATAATGAGACACTGGAGAAAGTGAATCCAAGGTCTAAGAAATGCATGATTGTCTCAAGACGCTGGTGGAAGTCCCAAGTCTATCACGAGACATTGGTGAAGAGAATTTCAAGTCTAGGCGATGAAAGAATCCCAAGTTCCGTCGAAGAGTTGTGA

Coding sequence (CDS)

ATGAAGATAAGGGCAAAAAAAGGAATGAATCTTAGGTCTGAGCGGGTAAACGCTGGTGAAATGAATCCCAGAATCACAGGTCTAGATAATGAGACACTGGAGAAAGTGAATCCAAGGTCTAAGAAATGCATGATTGTCTCAAGACGCTGGTGGAAGTCCCAAGTCTATCACGAGACATTGGTGAAGAGAATTTCAAGTCTAGGCGATGAAAGAATCCCAAGTTCCGTCGAAGAGTTGTGA

Protein sequence

MKIRAKKGMNLRSERVNAGEMNPRITGLDNETLEKVNPRSKKCMIVSRRWWKSQVYHETLVKRISSLGDERIPSSVEEL*
Homology
[Close]
BLAST of Csa6G016940 vs. TrEMBL
Match: A0A0A0KDL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016940 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 6.0e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MKIRAKKGMNLRSERVNAGEMNPRITGLDNETLEKVNPRSKKCMIVSRRWWKSQVYHETL 60
          MKIRAKKGMNLRSERVNAGEMNPRITGLDNETLEKVNPRSKKCMIVSRRWWKSQVYHETL
Sbjct: 1  MKIRAKKGMNLRSERVNAGEMNPRITGLDNETLEKVNPRSKKCMIVSRRWWKSQVYHETL 60

Query: 61 VKRISSLGDERIPSSVEEL 80
          VKRISSLGDERIPSSVEEL
Sbjct: 61 VKRISSLGDERIPSSVEEL 79

[Close]
BLAST of Csa6G016940 vs. NCBI nr
Match: gi|700190672|gb|KGN45876.1| (hypothetical protein Csa_6G016940 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 8.6e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MKIRAKKGMNLRSERVNAGEMNPRITGLDNETLEKVNPRSKKCMIVSRRWWKSQVYHETL 60
          MKIRAKKGMNLRSERVNAGEMNPRITGLDNETLEKVNPRSKKCMIVSRRWWKSQVYHETL
Sbjct: 1  MKIRAKKGMNLRSERVNAGEMNPRITGLDNETLEKVNPRSKKCMIVSRRWWKSQVYHETL 60

Query: 61 VKRISSLGDERIPSSVEEL 80
          VKRISSLGDERIPSSVEEL
Sbjct: 61 VKRISSLGDERIPSSVEEL 79

The following BLAST results are available for this feature:
BLAST of Csa6G016940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDL7_CUCSA6.0e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016940 PE=4 SV=1[more]
BLAST of Csa6G016940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190672|gb|KGN45876.1|8.6e-37100.00hypothetical protein Csa_6G016940 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G016940.1Csa6G016940.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G016940Silver-seed gourdcarcuB0699
Csa6G016940Watermelon (97103) v2cuwmbB490
Csa6G016940Watermelon (97103) v2cuwmbB504
Csa6G016940Wax gourdcuwgoB589
Csa6G016940Cucumber (Gy14) v1cgycuB511
Csa6G016940Cucurbita maxima (Rimu)cmacuB032
Csa6G016940Cucurbita maxima (Rimu)cmacuB485
Csa6G016940Cucurbita moschata (Rifu)cmocuB022
Csa6G016940Cucurbita moschata (Rifu)cmocuB473
Csa6G016940Melon (DHL92) v3.5.1cumeB415
Csa6G016940Watermelon (Charleston Gray)cuwcgB500
Csa6G016940Watermelon (Charleston Gray)cuwcgB513
Csa6G016940Watermelon (97103) v1cuwmB475
Csa6G016940Cucurbita pepo (Zucchini)cpecuB584
Csa6G016940Cucurbita pepo (Zucchini)cpecuB793
Csa6G016940Bottle gourd (USVL1VR-Ls)culsiB471
Csa6G016940Cucumber (Gy14) v2cgybcuB282
Csa6G016940Melon (DHL92) v3.6.1cumedB455