Csa6G014600 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G014600
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 1622393 .. 1622675 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTGGCTGGAACCGAATCCACCGTATAAAAGTCTTCCTAATTCTTCTATTAGGTTTGTCATTGGAATTGGAAAAACAATTGAGAGAAAGAAAAATGGCAGGTGAATCGTCTTTGTTCAAGTTCTTGAGCCCAGGACGCCGTTTCCAATCTACGGACATCCAGGCCGCCGCCGGCTGGGGTGTCGCCGCCGCCACAACTGCTCTCTGGGTCATTCAGGTTTTCACCTTTTCTAAATCCTTTGATCTATGCATACTTTTGTTTCTGATTTCCACAGATTTATGA

mRNA sequence

ATGGCAGGTGAATCGTCTTTGTTCAAGTTCTTGAGCCCAGGACGCCGTTTCCAATCTACGGACATCCAGGCCGCCGCCGGCTGGGGTGTCGCCGCCGCCACAACTGCTCTCTGGGTCATTCAGGTTTTCACCTTTTCTAAATCCTTTGATCTATGCATACTTTTGTTTCTGATTTCCACAGATTTATGA

Coding sequence (CDS)

ATGGCAGGTGAATCGTCTTTGTTCAAGTTCTTGAGCCCAGGACGCCGTTTCCAATCTACGGACATCCAGGCCGCCGCCGGCTGGGGTGTCGCCGCCGCCACAACTGCTCTCTGGGTCATTCAGGTTTTCACCTTTTCTAAATCCTTTGATCTATGCATACTTTTGTTTCTGATTTCCACAGATTTATGA

Protein sequence

MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSKSFDLCILLFLISTDL*
Homology
[Close]
BLAST of Csa6G014600 vs. Swiss-Prot
Match: UCR11_SOLTU (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 6.0e-09
Identity = 31/44 (70.45%), Postives = 31/44 (70.45%), Query Frame = 1 

Query: 2  AGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTF 46
          A  + LFKFL P  R QSTDIQAAAGWGVAA T ALWVIQ + F
Sbjct: 6  AAGNGLFKFLRPKLRPQSTDIQAAAGWGVAAVTGALWVIQPWDF 49

[Close]
BLAST of Csa6G014600 vs. TrEMBL
Match: A0A0A0K7V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014600 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.8e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSKSFDLCILLFLIST 60
          MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSKSFDLCILLFLIST
Sbjct: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSKSFDLCILLFLIST 60

Query: 61 DL 63
          DL
Sbjct: 61 DL 62

[Close]
BLAST of Csa6G014600 vs. TrEMBL
Match: A9PAG4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s08760g PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.2e-09
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1 

Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSK 48
          MAGE+++FKFLSP  R QSTDIQ AA WGVAA TTALW++Q F + K
Sbjct: 1  MAGENAMFKFLSPRLRLQSTDIQTAAFWGVAAGTTALWLVQPFDWIK 47

[Close]
BLAST of Csa6G014600 vs. TrEMBL
Match: A0A0D2SX41_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G219300 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-08
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 

Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSK 48
          MAGE +LFKFL PG+R Q  D+QAAA WGVAA T ALW+IQ F + K
Sbjct: 1  MAGERALFKFLKPGQRLQPADVQAAAMWGVAATTGALWLIQPFDWLK 47

[Close]
BLAST of Csa6G014600 vs. TrEMBL
Match: A0A067JNR0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03306 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-08
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1 

Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSK 48
          MAGE+++FKFL P  R Q TDIQAAA WGVAA TTALW+IQ F + K
Sbjct: 1  MAGETAVFKFLKPRLRPQITDIQAAAFWGVAATTTALWIIQPFNWIK 47

[Close]
BLAST of Csa6G014600 vs. TrEMBL
Match: K4BIZ6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-08
Identity = 33/44 (75.00%), Postives = 35/44 (79.55%), Query Frame = 1 

Query: 2  AGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTF 46
          A  + LFKFLSP RR QSTDIQAAAGWGVAA T ALWVIQ + F
Sbjct: 4  AAGNGLFKFLSPKRRPQSTDIQAAAGWGVAAVTGALWVIQPWDF 47

[Close]
BLAST of Csa6G014600 vs. TAIR10
Match: AT2G40765.1 (AT2G40765.1 unknown protein)

HSP 1 Score: 50.8 bits (120), Expect = 3.5e-07
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 1 

Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSK 48
          MAG S L   + P  + Q+ DIQAAAGWG+AAA  A+WV+Q F + K
Sbjct: 1  MAGTSGLLNAVKP--KIQTIDIQAAAGWGIAAAAGAIWVVQPFGWIK 45

[Close]
BLAST of Csa6G014600 vs. NCBI nr
Match: gi|700190636|gb|KGN45840.1| (hypothetical protein Csa_6G014600 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 5.4e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSKSFDLCILLFLIST 60
          MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSKSFDLCILLFLIST
Sbjct: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSKSFDLCILLFLIST 60

Query: 61 DL 63
          DL
Sbjct: 61 DL 62

[Close]
BLAST of Csa6G014600 vs. NCBI nr
Match: gi|224145008|ref|XP_002325493.1| (hypothetical protein POPTR_0019s08760g [Populus trichocarpa])

HSP 1 Score: 68.2 bits (165), Expect = 6.0e-09
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1 

Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSK 48
          MAGE+++FKFLSP  R QSTDIQ AA WGVAA TTALW++Q F + K
Sbjct: 1  MAGENAMFKFLSPRLRLQSTDIQTAAFWGVAAGTTALWLVQPFDWIK 47

[Close]
BLAST of Csa6G014600 vs. NCBI nr
Match: gi|763800998|gb|KJB67953.1| (hypothetical protein B456_010G219300 [Gossypium raimondii])

HSP 1 Score: 65.9 bits (159), Expect = 3.0e-08
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 

Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSK 48
          MAGE +LFKFL PG+R Q  D+QAAA WGVAA T ALW+IQ F + K
Sbjct: 1  MAGERALFKFLKPGQRLQPADVQAAAMWGVAATTGALWLIQPFDWLK 47

[Close]
BLAST of Csa6G014600 vs. NCBI nr
Match: gi|643704783|gb|KDP21635.1| (hypothetical protein JCGZ_03306 [Jatropha curcas])

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-08
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1 

Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSK 48
          MAGE+++FKFL P  R Q TDIQAAA WGVAA TTALW+IQ F + K
Sbjct: 1  MAGETAVFKFLKPRLRPQITDIQAAAFWGVAATTTALWIIQPFNWIK 47

[Close]
BLAST of Csa6G014600 vs. NCBI nr
Match: gi|763811731|gb|KJB78583.1| (hypothetical protein B456_013G008400 [Gossypium raimondii])

HSP 1 Score: 64.7 bits (156), Expect = 6.6e-08
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 1 

Query: 1  MAGESSLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVIQVFTFSK 48
          MAGE S+FKFL P  R Q  DIQAAA WGVAA TTALW+IQ F + K
Sbjct: 1  MAGEGSMFKFLKPRLRPQPIDIQAAAAWGVAATTTALWLIQPFDWLK 47

The following BLAST results are available for this feature:
BLAST of Csa6G014600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
UCR11_SOLTU6.0e-0970.45Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum PE... [more]
BLAST of Csa6G014600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7V0_CUCSA3.8e-26100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014600 PE=4 SV=1[more]
A9PAG4_POPTR4.2e-0968.09Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s08760g PE=2 SV=1[more]
A0A0D2SX41_GOSRA2.1e-0865.96Uncharacterized protein OS=Gossypium raimondii GN=B456_010G219300 PE=4 SV=1[more]
A0A067JNR0_JATCU2.7e-0868.09Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03306 PE=4 SV=1[more]
K4BIZ6_SOLLC2.7e-0875.00Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
BLAST of Csa6G014600 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G40765.13.5e-0753.19 unknown protein[more]
BLAST of Csa6G014600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190636|gb|KGN45840.1|5.4e-26100.00hypothetical protein Csa_6G014600 [Cucumis sativus][more]
gi|224145008|ref|XP_002325493.1|6.0e-0968.09hypothetical protein POPTR_0019s08760g [Populus trichocarpa][more]
gi|763800998|gb|KJB67953.1|3.0e-0865.96hypothetical protein B456_010G219300 [Gossypium raimondii][more]
gi|643704783|gb|KDP21635.1|3.9e-0868.09hypothetical protein JCGZ_03306 [Jatropha curcas][more]
gi|763811731|gb|KJB78583.1|6.6e-0868.09hypothetical protein B456_013G008400 [Gossypium raimondii][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU098809cucumber EST collection version 3.0transcribed_cluster
CU100093cucumber EST collection version 3.0transcribed_cluster
CU100115cucumber EST collection version 3.0transcribed_cluster
CU120667cucumber EST collection version 3.0transcribed_cluster
CU136945cucumber EST collection version 3.0transcribed_cluster
CU169630cucumber EST collection version 3.0transcribed_cluster
CU174180cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G014600.1Csa6G014600.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU120667CU120667transcribed_cluster
CU100093CU100093transcribed_cluster
CU098809CU098809transcribed_cluster
CU100115CU100115transcribed_cluster
CU169630CU169630transcribed_cluster
CU174180CU174180transcribed_cluster
CU136945CU136945transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G014600Carg02161Silver-seed gourdcarcuB0297
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G014600Watermelon (97103) v2cuwmbB423
Csa6G014600Wax gourdcuwgoB576
Csa6G014600Cucumber (Gy14) v1cgycuB465
Csa6G014600Cucurbita maxima (Rimu)cmacuB309
Csa6G014600Cucurbita maxima (Rimu)cmacuB768
Csa6G014600Cucurbita moschata (Rifu)cmocuB296
Csa6G014600Cucurbita moschata (Rifu)cmocuB759
Csa6G014600Melon (DHL92) v3.5.1cumeB478
Csa6G014600Watermelon (Charleston Gray)cuwcgB429
Csa6G014600Watermelon (97103) v1cuwmB534
Csa6G014600Cucurbita pepo (Zucchini)cpecuB198
Csa6G014600Cucurbita pepo (Zucchini)cpecuB460
Csa6G014600Bottle gourd (USVL1VR-Ls)culsiB444
Csa6G014600Cucumber (Gy14) v2cgybcuB282
Csa6G014600Melon (DHL92) v3.6.1cumedB455
Csa6G014600Silver-seed gourdcarcuB0023