Csa6G008000 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G008000
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 741646 .. 741861 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTACACGACAAGTAAAGGAAGGTAAAAGAATCTCTGGGTCAAAACGCACCGTATCTTTAACATTTATTCTGCTTGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCAGTGGGCAGTGCCATTCATCTCTTTGTTTCCCTGTGTAAAGTAAAGAGCCATGAGAAATCACGACCGCACATCATAGGGCCCCATCATCAGGTGCCTTAG

mRNA sequence

ATGCGTACACGACAAGTAAAGGAAGGTAAAAGAATCTCTGGGTCAAAACGCACCGTATCTTTAACATTTATTCTGCTTGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCAGTGGGCAGTGCCATTCATCTCTTTGTTTCCCTGTGTAAAGTAAAGAGCCATGAGAAATCACGACCGCACATCATAGGGCCCCATCATCAGGTGCCTTAG

Coding sequence (CDS)

ATGCGTACACGACAAGTAAAGGAAGGTAAAAGAATCTCTGGGTCAAAACGCACCGTATCTTTAACATTTATTCTGCTTGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCAGTGGGCAGTGCCATTCATCTCTTTGTTTCCCTGTGTAAAGTAAAGAGCCATGAGAAATCACGACCGCACATCATAGGGCCCCATCATCAGGTGCCTTAG

Protein sequence

MRTRQVKEGKRISGSKRTVSLTFILLAVAVAVAVAVAVAVGSAIHLFVSLCKVKSHEKSRPHIIGPHHQVP*
Homology
[Close]
BLAST of Csa6G008000 vs. TrEMBL
Match: A0A0A0KBE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G008000 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.2e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MRTRQVKEGKRISGSKRTVSLTFILLAVAVAVAVAVAVAVGSAIHLFVSLCKVKSHEKSR 60
          MRTRQVKEGKRISGSKRTVSLTFILLAVAVAVAVAVAVAVGSAIHLFVSLCKVKSHEKSR
Sbjct: 1  MRTRQVKEGKRISGSKRTVSLTFILLAVAVAVAVAVAVAVGSAIHLFVSLCKVKSHEKSR 60

Query: 61 PHIIGPHHQVP 72
          PHIIGPHHQVP
Sbjct: 61 PHIIGPHHQVP 71

[Close]
BLAST of Csa6G008000 vs. NCBI nr
Match: gi|700190513|gb|KGN45717.1| (hypothetical protein Csa_6G008000 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 3.2e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MRTRQVKEGKRISGSKRTVSLTFILLAVAVAVAVAVAVAVGSAIHLFVSLCKVKSHEKSR 60
          MRTRQVKEGKRISGSKRTVSLTFILLAVAVAVAVAVAVAVGSAIHLFVSLCKVKSHEKSR
Sbjct: 1  MRTRQVKEGKRISGSKRTVSLTFILLAVAVAVAVAVAVAVGSAIHLFVSLCKVKSHEKSR 60

Query: 61 PHIIGPHHQVP 72
          PHIIGPHHQVP
Sbjct: 61 PHIIGPHHQVP 71

The following BLAST results are available for this feature:
BLAST of Csa6G008000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBE5_CUCSA2.2e-30100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G008000 PE=4 SV=1[more]
BLAST of Csa6G008000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190513|gb|KGN45717.1|3.2e-30100.00hypothetical protein Csa_6G008000 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G008000.1Csa6G008000.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G008000Wax gourdcuwgoB586
Csa6G008000Cucumber (Gy14) v1cgycuB195
Csa6G008000Cucurbita maxima (Rimu)cmacuB309
Csa6G008000Cucurbita moschata (Rifu)cmocuB296
Csa6G008000Melon (DHL92) v3.5.1cumeB467
Csa6G008000Watermelon (Charleston Gray)cuwcgB429
Csa6G008000Watermelon (97103) v1cuwmB533
Csa6G008000Cucurbita pepo (Zucchini)cpecuB198
Csa6G008000Bottle gourd (USVL1VR-Ls)culsiB444
Csa6G008000Cucumber (Gy14) v2cgybcuB282
Csa6G008000Melon (DHL92) v3.6.1cumedB448
Csa6G008000Watermelon (97103) v2cuwmbB423