Csa6G002880 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G002880
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 292794 .. 293141 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTACGCTCCAAATTCTTGGATTGGGTGAACTGAGGAGCTCCATTTTCTCACTCCTCGCCGTTTCCAACTCCGCCACTCTCCGATGCTTCCCATCATCGGTGTCGCTTGCTGTCTCCTACTCCGATGAATCTCATTCCTTCCTTGTATCCTTCCAAATGTTCGATCCATTCTTCACCATTTTCTCCCGCGGCGACGGCGATTACAATTTCGACATCGATCTTCAAGAACTTTCTCGTCTTATCTTGGCCGAAGAAGATCTTTTCTTGACTATTCTTGTTCCCAGTGCCTTCTCATCTGCCAGCCTAATTTCTTCAACTAGTACGTTCGGTTTCCGAAAAATTTAG

mRNA sequence

ATGTTTACGCTCCAAATTCTTGGATTGGGTGAACTGAGGAGCTCCATTTTCTCACTCCTCGCCGTTTCCAACTCCGCCACTCTCCGATGCTTCCCATCATCGGTGTCGCTTGCTGTCTCCTACTCCGATGAATCTCATTCCTTCCTTGTATCCTTCCAAATGTTCGATCCATTCTTCACCATTTTCTCCCGCGGCGACGGCGATTACAATTTCGACATCGATCTTCAAGAACTTTCTCGTCTTATCTTGGCCGAAGAAGATCTTTTCTTGACTATTCTTGTTCCCAGTGCCTTCTCATCTGCCAGCCTAATTTCTTCAACTAGTACGTTCGGTTTCCGAAAAATTTAG

Coding sequence (CDS)

ATGTTTACGCTCCAAATTCTTGGATTGGGTGAACTGAGGAGCTCCATTTTCTCACTCCTCGCCGTTTCCAACTCCGCCACTCTCCGATGCTTCCCATCATCGGTGTCGCTTGCTGTCTCCTACTCCGATGAATCTCATTCCTTCCTTGTATCCTTCCAAATGTTCGATCCATTCTTCACCATTTTCTCCCGCGGCGACGGCGATTACAATTTCGACATCGATCTTCAAGAACTTTCTCGTCTTATCTTGGCCGAAGAAGATCTTTTCTTGACTATTCTTGTTCCCAGTGCCTTCTCATCTGCCAGCCTAATTTCTTCAACTAGTACGTTCGGTTTCCGAAAAATTTAG

Protein sequence

MFTLQILGLGELRSSIFSLLAVSNSATLRCFPSSVSLAVSYSDESHSFLVSFQMFDPFFTIFSRGDGDYNFDIDLQELSRLILAEEDLFLTILVPSAFSSASLISSTSTFGFRKI*

Homology

[Close]

BLAST of Csa6G002880 vs. TrEMBL
Match: A0A0A0K7E6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002880 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 7.1e-55
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1


Query: 1   MFTLQILGLGELRSSIFSLLAVSNSATLRCFPSSVSLAVSYSDESHSFLVSFQMFDPFFT 60
           MFTLQILGLGELRSSIFSLLAVSNSATLRCFPSSVSLAVSYSDESHSFLVSFQMFDPFFT
Sbjct: 1   MFTLQILGLGELRSSIFSLLAVSNSATLRCFPSSVSLAVSYSDESHSFLVSFQMFDPFFT 60

Query: 61  IFSRGDGDYNFDIDLQELSRLILAEEDLFLTILVPSAFSSASLISSTSTFGFRKI 116
           IFSRGDGDYNFDIDLQELSRLILAEEDLFLTILVPSAFSSASLISSTSTFGFRKI
Sbjct: 61  IFSRGDGDYNFDIDLQELSRLILAEEDLFLTILVPSAFSSASLISSTSTFGFRKI 115

[Close]

BLAST of Csa6G002880 vs. NCBI nr
Match: gi|700190441|gb|KGN45645.1| (hypothetical protein Csa_6G002880 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 1.0e-54
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1


Query: 1   MFTLQILGLGELRSSIFSLLAVSNSATLRCFPSSVSLAVSYSDESHSFLVSFQMFDPFFT 60
           MFTLQILGLGELRSSIFSLLAVSNSATLRCFPSSVSLAVSYSDESHSFLVSFQMFDPFFT
Sbjct: 1   MFTLQILGLGELRSSIFSLLAVSNSATLRCFPSSVSLAVSYSDESHSFLVSFQMFDPFFT 60

Query: 61  IFSRGDGDYNFDIDLQELSRLILAEEDLFLTILVPSAFSSASLISSTSTFGFRKI 116
           IFSRGDGDYNFDIDLQELSRLILAEEDLFLTILVPSAFSSASLISSTSTFGFRKI
Sbjct: 61  IFSRGDGDYNFDIDLQELSRLILAEEDLFLTILVPSAFSSASLISSTSTFGFRKI 115

[Close]

BLAST of Csa6G002880 vs. NCBI nr
Match: gi|778721940|ref|XP_011658377.1| (PREDICTED: uncharacterized protein LOC105435978 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 1.2e-50
Identity = 109/115 (94.78%), Postives = 110/115 (95.65%), Query Frame = 1


Query: 1   MFTLQILGLGELRSSIFSLLAVSNSATLRCFPSSVSLAVSYSDESHSFLVSFQMFDPFFT 60
           MFTLQILGLGELRSSIFSLLAVSNSATLRCFPSSVSLAVSYSDESHSFLVSFQMFDPFFT
Sbjct: 1   MFTLQILGLGELRSSIFSLLAVSNSATLRCFPSSVSLAVSYSDESHSFLVSFQMFDPFFT 60

Query: 61  IFSRGDGDYNFDIDLQELSRLILAEEDLFLTILVPSAFSSASLISSTSTFGFRKI 116
           IFSRGDGDYNFDIDLQELSRLILAEEDLFLTILVPSAFSSASLISST    FR +
Sbjct: 61  IFSRGDGDYNFDIDLQELSRLILAEEDLFLTILVPSAFSSASLISSTRDGKFRSL 115

The following BLAST results are available for this feature:

BLAST of Csa6G002880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7E6_CUCSA	7.1e-55	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002880 PE=4 SV=1	[more]

BLAST of Csa6G002880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190441\|gb\|KGN45645.1\|	1.0e-54	100.00	hypothetical protein Csa_6G002880 [Cucumis sativus]	[more]
gi\|778721940\|ref\|XP_011658377.1\|	1.2e-50	94.78	PREDICTED: uncharacterized protein LOC105435978 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G002880.1	Csa6G002880.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G002880	MELO3C035216.2	Melon (DHL92) v3.6.1	cumedB404

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G002880	Cucumber (Gy14) v1	cgycuB195
Csa6G002880	Cucurbita maxima (Rimu)	cmacuB368
Csa6G002880	Cucurbita maxima (Rimu)	cmacuB905
Csa6G002880	Cucurbita moschata (Rifu)	cmocuB357
Csa6G002880	Cucurbita moschata (Rifu)	cmocuB890
Csa6G002880	Melon (DHL92) v3.5.1	cumeB422
Csa6G002880	Watermelon (Charleston Gray)	cuwcgB480
Csa6G002880	Watermelon (97103) v1	cuwmB539
Csa6G002880	Cucurbita pepo (Zucchini)	cpecuB141
Csa6G002880	Cucurbita pepo (Zucchini)	cpecuB316
Csa6G002880	Bottle gourd (USVL1VR-Ls)	culsiB394
Csa6G002880	Cucumber (Gy14) v2	cgybcuB282
Csa6G002880	Silver-seed gourd	carcuB0073
Csa6G002880	Silver-seed gourd	carcuB0635
Csa6G002880	Watermelon (97103) v2	cuwmbB472
Csa6G002880	Wax gourd	cuwgoB534