Csa6G002380 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G002380
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 291983 .. 292443 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGATGGGAAATTTCGATCTCTGGCTTCCTTGTGGACGATGCTTCCCCAAAACCGGGGAGTGAGCAAATTTGATCTCAAATTGTTCGTGGCAATTGATGCAGTAAAGTTCAGAGAGATAGTAGCACGATTATCTGATTACAATGGTCCAAGTAATTTGTTTTCTCTTCTCCTTATTTGCAATTTACATATACAAAGTGTTCTTGTAAGTTTACGAAATTTGTCTCTCTGCAATAGTTTTTGCTACTGCATCGACTTCACAAGTGAAGTTCTATGGAAGAACAGCTGAAGGGGAGATTATTGGGGCTACTCTTCTTACTGCTGAGGTAATACAATATAGAATAATGTCTATAAACTATCTCATAAATCCAATAATAAGATACAAAATTTGAAGTTGGGTAACTTGTCTGCTAAATACATTTTGAAATTGAGAGACCTATGCGATACAATCTTGAATGCTTAG

mRNA sequence

ATGCTTCCCCAAAACCGGGGAGTGAGCAAATTTGATCTCAAATTGTTCGTGGCAATTGATGCAGTAAAGTTCAGAGAGATAGTAGCACGATTATCTGATTACAATGGTCCAATTTTTGCTACTGCATCGACTTCACAAGTGAAGTTCTATGGAAGAACAGCTGAAGGGGAGATTATTGGGGCTACTCTTCTTACTGCTGAGATACAAAATTTGAAGTTGGGTAACTTGTCTGCTAAATACATTTTGAAATTGAGAGACCTATGCGATACAATCTTGAATGCTTAG

Coding sequence (CDS)

ATGCTTCCCCAAAACCGGGGAGTGAGCAAATTTGATCTCAAATTGTTCGTGGCAATTGATGCAGTAAAGTTCAGAGAGATAGTAGCACGATTATCTGATTACAATGGTCCAATTTTTGCTACTGCATCGACTTCACAAGTGAAGTTCTATGGAAGAACAGCTGAAGGGGAGATTATTGGGGCTACTCTTCTTACTGCTGAGATACAAAATTTGAAGTTGGGTAACTTGTCTGCTAAATACATTTTGAAATTGAGAGACCTATGCGATACAATCTTGAATGCTTAG

Protein sequence

MLPQNRGVSKFDLKLFVAIDAVKFREIVARLSDYNGPIFATASTSQVKFYGRTAEGEIIGATLLTAEIQNLKLGNLSAKYILKLRDLCDTILNA*

Homology

[Close]

BLAST of Csa6G002380 vs. TrEMBL
Match: A0A0A0K9X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002380 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.3e-43
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1


Query: 1  MLPQNRGVSKFDLKLFVAIDAVKFREIVARLSDYNGPIFATASTSQVKFYGRTAEGEIIG 60
          MLPQNRGVSKFDLKLFVAIDAVKFREIVARLSDYNGPIFATASTSQVKFYGRTAEGEIIG
Sbjct: 1  MLPQNRGVSKFDLKLFVAIDAVKFREIVARLSDYNGPIFATASTSQVKFYGRTAEGEIIG 60

Query: 61 ATLLTAEIQNLKLGNLSAKYILKLRDLCDTILNA 95
          ATLLTAEIQNLKLGNLSAKYILKLRDLCDTILNA
Sbjct: 61 ATLLTAEIQNLKLGNLSAKYILKLRDLCDTILNA 94

[Close]

BLAST of Csa6G002380 vs. NCBI nr
Match: gi|700190440|gb|KGN45644.1| (hypothetical protein Csa_6G002380 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-43
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1


Query: 1  MLPQNRGVSKFDLKLFVAIDAVKFREIVARLSDYNGPIFATASTSQVKFYGRTAEGEIIG 60
          MLPQNRGVSKFDLKLFVAIDAVKFREIVARLSDYNGPIFATASTSQVKFYGRTAEGEIIG
Sbjct: 1  MLPQNRGVSKFDLKLFVAIDAVKFREIVARLSDYNGPIFATASTSQVKFYGRTAEGEIIG 60

Query: 61 ATLLTAEIQNLKLGNLSAKYILKLRDLCDTILNA 95
          ATLLTAEIQNLKLGNLSAKYILKLRDLCDTILNA
Sbjct: 61 ATLLTAEIQNLKLGNLSAKYILKLRDLCDTILNA 94

[Close]

BLAST of Csa6G002380 vs. NCBI nr
Match: gi|778721940|ref|XP_011658377.1| (PREDICTED: uncharacterized protein LOC105435978 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 2.3e-28
Identity = 69/79 (87.34%), Postives = 71/79 (89.87%), Query Frame = 1


Query: 1   MLPQNRGVSKFDLKLFVAIDAVKFREIVARLSDYNGPIFATASTSQVKFYGRTAEGEIIG 60
           MLPQNRGVSKFDLKLFVAIDAVKFREIVARLSDYNGPIFATASTSQVKFYGRTAEGEIIG
Sbjct: 121 MLPQNRGVSKFDLKLFVAIDAVKFREIVARLSDYNGPIFATASTSQVKFYGRTAEGEIIG 180

Query: 61  ATLLTAEIQNLKLGNLSAK 80
           ATLLTAE +    G  + K
Sbjct: 181 ATLLTAERRECLAGGFNDK 199

The following BLAST results are available for this feature:

BLAST of Csa6G002380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9X2_CUCSA	1.3e-43	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002380 PE=4 SV=1	[more]

BLAST of Csa6G002380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190440\|gb\|KGN45644.1\|	1.9e-43	100.00	hypothetical protein Csa_6G002380 [Cucumis sativus]	[more]
gi\|778721940\|ref\|XP_011658377.1\|	2.3e-28	87.34	PREDICTED: uncharacterized protein LOC105435978 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G002380.1	Csa6G002380.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G002380	CSPI06G00370	Wild cucumber (PI 183967)	cpicuB314
Csa6G002380	Cp4.1LG17g03580	Cucurbita pepo (Zucchini)	cpecuB316
Csa6G002380	CsGy6G000440	Cucumber (Gy14) v2	cgybcuB282
Csa6G002380	Carg27105	Silver-seed gourd	carcuB0635

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G002380	Watermelon (97103) v2	cuwmbB472
Csa6G002380	Wax gourd	cuwgoB534
Csa6G002380	Cucumber (Gy14) v1	cgycuB195
Csa6G002380	Cucurbita maxima (Rimu)	cmacuB368
Csa6G002380	Cucurbita maxima (Rimu)	cmacuB905
Csa6G002380	Cucurbita moschata (Rifu)	cmocuB357
Csa6G002380	Cucurbita moschata (Rifu)	cmocuB890
Csa6G002380	Melon (DHL92) v3.5.1	cumeB422
Csa6G002380	Watermelon (Charleston Gray)	cuwcgB480
Csa6G002380	Watermelon (97103) v1	cuwmB539
Csa6G002380	Cucurbita pepo (Zucchini)	cpecuB141
Csa6G002380	Bottle gourd (USVL1VR-Ls)	culsiB394
Csa6G002380	Melon (DHL92) v3.6.1	cumedB404
Csa6G002380	Silver-seed gourd	carcuB0073